data_6ZUM # _model_server_result.job_id 8iwq7VEU67UxwDu2SW-HQA _model_server_result.datetime_utc '2024-11-27 02:11:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":107}' # _entry.id 6ZUM # _exptl.entry_id 6ZUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZUM _cell.length_a 51.057 _cell.length_b 51.057 _cell.length_c 102.477 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SNM 1 A SNM 1 1_555 A N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C GLY 24 A GLY 24 1_555 A N MLY 25 A MLY 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C MLY 25 A MLY 25 1_555 A N ILE 26 A ILE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C GLY 33 A GLY 33 1_555 A N MLY 34 A MLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale5 A C MLY 34 A MLY 34 1_555 A N GLY 35 A GLY 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale6 A C THR 82 A THR 82 1_555 A N MLY 83 A MLY 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C MLY 83 A MLY 83 1_555 A N GLY 84 A GLY 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A O SNM 1 A SNM 1 1_555 F ZN ZN . A ZN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc2 A NE2 HIS 23 A HIS 23 1_555 E ZN ZN . A ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc3 A NE2 HIS 60 A HIS 60 1_555 E ZN ZN . A ZN 104 9_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 D O ACT . A ACT 103 1_555 E ZN ZN . A ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc5 D OXT ACT . A ACT 103 1_555 E ZN ZN . A ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc6 E ZN ZN . A ZN 104 1_555 J O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc7 G O02 QQ7 . A QQ7 106 1_555 H NA NA . A NA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc8 G O07 QQ7 . A QQ7 106 1_555 H NA NA . A NA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc9 G O02 QQ7 . A QQ7 106 1_555 H NA NA . A NA 107 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc10 G O07 QQ7 . A QQ7 106 1_555 H NA NA . A NA 107 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc11 G O07 QQ7 . A QQ7 106 1_555 I NA NA . A NA 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.166 ? metalc ? metalc12 G O07 QQ7 . A QQ7 106 1_555 I NA NA . A NA 108 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 3.189 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZUM _atom_sites.fract_transf_matrix[1][1] 0.019586 _atom_sites.fract_transf_matrix[1][2] 0.011308 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BDF A 1 101 101 BDF BDF . C 2 BDF A 1 102 201 BDF BDF . D 3 ACT A 1 103 301 ACT ACT . E 4 ZN A 1 104 1 ZN ZN . F 4 ZN A 1 105 3 ZN ZN . G 5 QQ7 A 1 106 1 QQ7 QQ7 . H 6 NA A 1 107 1 NA NA . I 6 NA A 1 108 2 NA NA . J 7 HOH A 1 201 19 HOH HOH . J 7 HOH A 2 202 70 HOH HOH . J 7 HOH A 3 203 46 HOH HOH . J 7 HOH A 4 204 58 HOH HOH . J 7 HOH A 5 205 20 HOH HOH . J 7 HOH A 6 206 27 HOH HOH . J 7 HOH A 7 207 22 HOH HOH . J 7 HOH A 8 208 9 HOH HOH . J 7 HOH A 9 209 3 HOH HOH . J 7 HOH A 10 210 34 HOH HOH . J 7 HOH A 11 211 7 HOH HOH . J 7 HOH A 12 212 11 HOH HOH . J 7 HOH A 13 213 1 HOH HOH . J 7 HOH A 14 214 33 HOH HOH . J 7 HOH A 15 215 45 HOH HOH . J 7 HOH A 16 216 23 HOH HOH . J 7 HOH A 17 217 36 HOH HOH . J 7 HOH A 18 218 4 HOH HOH . J 7 HOH A 19 219 6 HOH HOH . J 7 HOH A 20 220 14 HOH HOH . J 7 HOH A 21 221 30 HOH HOH . J 7 HOH A 22 222 32 HOH HOH . J 7 HOH A 23 223 35 HOH HOH . J 7 HOH A 24 224 42 HOH HOH . J 7 HOH A 25 225 69 HOH HOH . J 7 HOH A 26 226 43 HOH HOH . J 7 HOH A 27 227 60 HOH HOH . J 7 HOH A 28 228 13 HOH HOH . J 7 HOH A 29 229 5 HOH HOH . J 7 HOH A 30 230 21 HOH HOH . J 7 HOH A 31 231 57 HOH HOH . J 7 HOH A 32 232 18 HOH HOH . J 7 HOH A 33 233 10 HOH HOH . J 7 HOH A 34 234 28 HOH HOH . J 7 HOH A 35 235 26 HOH HOH . J 7 HOH A 36 236 29 HOH HOH . J 7 HOH A 37 237 8 HOH HOH . J 7 HOH A 38 238 15 HOH HOH . J 7 HOH A 39 239 52 HOH HOH . J 7 HOH A 40 240 62 HOH HOH . J 7 HOH A 41 241 16 HOH HOH . J 7 HOH A 42 242 2 HOH HOH . J 7 HOH A 43 243 51 HOH HOH . J 7 HOH A 44 244 66 HOH HOH . J 7 HOH A 45 245 44 HOH HOH . J 7 HOH A 46 246 59 HOH HOH . J 7 HOH A 47 247 25 HOH HOH . J 7 HOH A 48 248 17 HOH HOH . J 7 HOH A 49 249 40 HOH HOH . J 7 HOH A 50 250 47 HOH HOH . J 7 HOH A 51 251 48 HOH HOH . J 7 HOH A 52 252 12 HOH HOH . J 7 HOH A 53 253 39 HOH HOH . J 7 HOH A 54 254 63 HOH HOH . J 7 HOH A 55 255 37 HOH HOH . J 7 HOH A 56 256 71 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x 25.537 _atom_site.Cartn_y 14.693 _atom_site.Cartn_z -6.496 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 56.09 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 107 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #