data_6ZV9 # _model_server_result.job_id zcz-RtxX7txrw_Kw3OpQ_A _model_server_result.datetime_utc '2024-12-12 18:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 6ZV9 # _exptl.entry_id 6ZV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.69 _cell.angle_gamma 90 _cell.entry_id 6ZV9 _cell.length_a 43.97 _cell.length_b 56.47 _cell.length_c 71.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 35 A GLU 31 1_555 C TB TB . A TB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc2 A OE2 GLU 35 A GLU 31 1_555 C TB TB . A TB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc3 A OE1 GLU 158 A GLU 154 1_555 C TB TB . A TB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc4 A OE2 GLU 158 A GLU 154 1_555 C TB TB . A TB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc5 C TB TB . A TB 201 1_555 B OE1 GLU 35 B GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc6 C TB TB . A TB 201 1_555 B OE2 GLU 35 B GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc7 C TB TB . A TB 201 1_555 B OE1 GLU 158 B GLU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc8 C TB TB . A TB 201 1_555 B OE2 GLU 158 B GLU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc9 C TB TB . A TB 201 1_555 F O HOH . B HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 6ZV9 _atom_sites.fract_transf_matrix[1][1] 0.022743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004707 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TB A 1 201 1 TB TB . D 3 EDO A 1 202 1 EDO EDO . E 4 HOH A 1 301 29 HOH HOH . E 4 HOH A 2 302 39 HOH HOH . E 4 HOH A 3 303 45 HOH HOH . E 4 HOH A 4 304 19 HOH HOH . E 4 HOH A 5 305 31 HOH HOH . E 4 HOH A 6 306 38 HOH HOH . E 4 HOH A 7 307 14 HOH HOH . E 4 HOH A 8 308 9 HOH HOH . E 4 HOH A 9 309 32 HOH HOH . E 4 HOH A 10 310 12 HOH HOH . E 4 HOH A 11 311 33 HOH HOH . E 4 HOH A 12 312 22 HOH HOH . E 4 HOH A 13 313 23 HOH HOH . E 4 HOH A 14 314 3 HOH HOH . E 4 HOH A 15 315 24 HOH HOH . E 4 HOH A 16 316 18 HOH HOH . E 4 HOH A 17 317 37 HOH HOH . E 4 HOH A 18 318 26 HOH HOH . E 4 HOH A 19 319 42 HOH HOH . F 4 HOH B 1 201 35 HOH HOH . F 4 HOH B 2 202 43 HOH HOH . F 4 HOH B 3 203 10 HOH HOH . F 4 HOH B 4 204 5 HOH HOH . F 4 HOH B 5 205 27 HOH HOH . F 4 HOH B 6 206 30 HOH HOH . F 4 HOH B 7 207 11 HOH HOH . F 4 HOH B 8 208 2 HOH HOH . F 4 HOH B 9 209 16 HOH HOH . F 4 HOH B 10 210 44 HOH HOH . F 4 HOH B 11 211 25 HOH HOH . F 4 HOH B 12 212 7 HOH HOH . F 4 HOH B 13 213 21 HOH HOH . F 4 HOH B 14 214 6 HOH HOH . F 4 HOH B 15 215 13 HOH HOH . F 4 HOH B 16 216 4 HOH HOH . F 4 HOH B 17 217 28 HOH HOH . F 4 HOH B 18 218 34 HOH HOH . F 4 HOH B 19 219 8 HOH HOH . F 4 HOH B 20 220 40 HOH HOH . F 4 HOH B 21 221 36 HOH HOH . F 4 HOH B 22 222 15 HOH HOH . F 4 HOH B 23 223 17 HOH HOH . F 4 HOH B 24 224 20 HOH HOH . F 4 HOH B 25 225 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 18.107 -13.727 24.324 1 29.66 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . D 3 18.947 -12.91 25.114 1 31.61 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . D 3 16.849 -13.043 23.94 1 29.05 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . D 3 17.049 -11.83 23.223 1 31.83 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 129 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #