data_6ZVD # _model_server_result.job_id BPEitOn98Al3UkH2MUSOuQ _model_server_result.datetime_utc '2024-11-24 00:17:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zvd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6ZVD # _exptl.entry_id 6ZVD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZVD _cell.length_a 82.35 _cell.length_b 111.984 _cell.length_c 62.427 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 42 A SER 37 1_555 A N CSO 43 A CSO 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale2 A C CSO 43 A CSO 38 1_555 A N GLU 44 A GLU 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 B C ASN 5 P ASN 390 1_555 B N TPO 6 P TPO 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 B C TPO 6 P TPO 391 1_555 B N LEU 7 P LEU 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? metalc ? metalc1 A O ALA 2 A ALA -3 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A OG SER 5 A SER 0 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc3 A OE2 GLU 40 A GLU 35 1_555 C MG MG . A MG 301 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc4 A OE2 GLU 88 A GLU 83 1_555 D MG MG . A MG 302 2_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc5 A O GLU 115 A GLU 110 1_555 C MG MG . A MG 301 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 A OE2 GLU 193 A GLU 188 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc7 C MG MG . A MG 301 1_555 E O HOH . A HOH 519 6_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZVD _atom_sites.fract_transf_matrix[1][1] 0.012143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 301 1 MG MG . D 3 MG A 1 302 2 MG MG . E 4 HOH A 1 401 176 HOH HOH . E 4 HOH A 2 402 153 HOH HOH . E 4 HOH A 3 403 4 HOH HOH . E 4 HOH A 4 404 68 HOH HOH . E 4 HOH A 5 405 50 HOH HOH . E 4 HOH A 6 406 113 HOH HOH . E 4 HOH A 7 407 24 HOH HOH . E 4 HOH A 8 408 19 HOH HOH . E 4 HOH A 9 409 72 HOH HOH . E 4 HOH A 10 410 32 HOH HOH . E 4 HOH A 11 411 75 HOH HOH . E 4 HOH A 12 412 82 HOH HOH . E 4 HOH A 13 413 144 HOH HOH . E 4 HOH A 14 414 70 HOH HOH . E 4 HOH A 15 415 35 HOH HOH . E 4 HOH A 16 416 11 HOH HOH . E 4 HOH A 17 417 92 HOH HOH . E 4 HOH A 18 418 98 HOH HOH . E 4 HOH A 19 419 29 HOH HOH . E 4 HOH A 20 420 47 HOH HOH . E 4 HOH A 21 421 8 HOH HOH . E 4 HOH A 22 422 2 HOH HOH . E 4 HOH A 23 423 155 HOH HOH . E 4 HOH A 24 424 174 HOH HOH . E 4 HOH A 25 425 97 HOH HOH . E 4 HOH A 26 426 7 HOH HOH . E 4 HOH A 27 427 175 HOH HOH . E 4 HOH A 28 428 57 HOH HOH . E 4 HOH A 29 429 127 HOH HOH . E 4 HOH A 30 430 3 HOH HOH . E 4 HOH A 31 431 48 HOH HOH . E 4 HOH A 32 432 99 HOH HOH . E 4 HOH A 33 433 18 HOH HOH . E 4 HOH A 34 434 137 HOH HOH . E 4 HOH A 35 435 13 HOH HOH . E 4 HOH A 36 436 33 HOH HOH . E 4 HOH A 37 437 94 HOH HOH . E 4 HOH A 38 438 36 HOH HOH . E 4 HOH A 39 439 16 HOH HOH . E 4 HOH A 40 440 58 HOH HOH . E 4 HOH A 41 441 131 HOH HOH . E 4 HOH A 42 442 117 HOH HOH . E 4 HOH A 43 443 26 HOH HOH . E 4 HOH A 44 444 40 HOH HOH . E 4 HOH A 45 445 39 HOH HOH . E 4 HOH A 46 446 102 HOH HOH . E 4 HOH A 47 447 164 HOH HOH . E 4 HOH A 48 448 9 HOH HOH . E 4 HOH A 49 449 84 HOH HOH . E 4 HOH A 50 450 34 HOH HOH . E 4 HOH A 51 451 112 HOH HOH . E 4 HOH A 52 452 22 HOH HOH . E 4 HOH A 53 453 45 HOH HOH . E 4 HOH A 54 454 15 HOH HOH . E 4 HOH A 55 455 41 HOH HOH . E 4 HOH A 56 456 28 HOH HOH . E 4 HOH A 57 457 12 HOH HOH . E 4 HOH A 58 458 30 HOH HOH . E 4 HOH A 59 459 59 HOH HOH . E 4 HOH A 60 460 6 HOH HOH . E 4 HOH A 61 461 44 HOH HOH . E 4 HOH A 62 462 120 HOH HOH . E 4 HOH A 63 463 27 HOH HOH . E 4 HOH A 64 464 132 HOH HOH . E 4 HOH A 65 465 17 HOH HOH . E 4 HOH A 66 466 129 HOH HOH . E 4 HOH A 67 467 150 HOH HOH . E 4 HOH A 68 468 46 HOH HOH . E 4 HOH A 69 469 109 HOH HOH . E 4 HOH A 70 470 119 HOH HOH . E 4 HOH A 71 471 51 HOH HOH . E 4 HOH A 72 472 55 HOH HOH . E 4 HOH A 73 473 63 HOH HOH . E 4 HOH A 74 474 66 HOH HOH . E 4 HOH A 75 475 23 HOH HOH . E 4 HOH A 76 476 1 HOH HOH . E 4 HOH A 77 477 100 HOH HOH . E 4 HOH A 78 478 101 HOH HOH . E 4 HOH A 79 479 118 HOH HOH . E 4 HOH A 80 480 80 HOH HOH . E 4 HOH A 81 481 10 HOH HOH . E 4 HOH A 82 482 79 HOH HOH . E 4 HOH A 83 483 140 HOH HOH . E 4 HOH A 84 484 88 HOH HOH . E 4 HOH A 85 485 71 HOH HOH . E 4 HOH A 86 486 54 HOH HOH . E 4 HOH A 87 487 42 HOH HOH . E 4 HOH A 88 488 124 HOH HOH . E 4 HOH A 89 489 159 HOH HOH . E 4 HOH A 90 490 67 HOH HOH . E 4 HOH A 91 491 122 HOH HOH . E 4 HOH A 92 492 170 HOH HOH . E 4 HOH A 93 493 90 HOH HOH . E 4 HOH A 94 494 56 HOH HOH . E 4 HOH A 95 495 65 HOH HOH . E 4 HOH A 96 496 151 HOH HOH . E 4 HOH A 97 497 25 HOH HOH . E 4 HOH A 98 498 148 HOH HOH . E 4 HOH A 99 499 20 HOH HOH . E 4 HOH A 100 500 86 HOH HOH . E 4 HOH A 101 501 49 HOH HOH . E 4 HOH A 102 502 74 HOH HOH . E 4 HOH A 103 503 167 HOH HOH . E 4 HOH A 104 504 103 HOH HOH . E 4 HOH A 105 505 87 HOH HOH . E 4 HOH A 106 506 172 HOH HOH . E 4 HOH A 107 507 108 HOH HOH . E 4 HOH A 108 508 21 HOH HOH . E 4 HOH A 109 509 169 HOH HOH . E 4 HOH A 110 510 141 HOH HOH . E 4 HOH A 111 511 83 HOH HOH . E 4 HOH A 112 512 78 HOH HOH . E 4 HOH A 113 513 128 HOH HOH . E 4 HOH A 114 514 64 HOH HOH . E 4 HOH A 115 515 5 HOH HOH . E 4 HOH A 116 516 135 HOH HOH . E 4 HOH A 117 517 126 HOH HOH . E 4 HOH A 118 518 105 HOH HOH . E 4 HOH A 119 519 115 HOH HOH . E 4 HOH A 120 520 152 HOH HOH . E 4 HOH A 121 521 185 HOH HOH . E 4 HOH A 122 522 53 HOH HOH . E 4 HOH A 123 523 156 HOH HOH . E 4 HOH A 124 524 114 HOH HOH . E 4 HOH A 125 525 162 HOH HOH . E 4 HOH A 126 526 177 HOH HOH . E 4 HOH A 127 527 157 HOH HOH . E 4 HOH A 128 528 93 HOH HOH . E 4 HOH A 129 529 60 HOH HOH . E 4 HOH A 130 530 179 HOH HOH . E 4 HOH A 131 531 183 HOH HOH . E 4 HOH A 132 532 180 HOH HOH . E 4 HOH A 133 533 163 HOH HOH . E 4 HOH A 134 534 31 HOH HOH . E 4 HOH A 135 535 181 HOH HOH . E 4 HOH A 136 536 168 HOH HOH . E 4 HOH A 137 537 52 HOH HOH . E 4 HOH A 138 538 69 HOH HOH . E 4 HOH A 139 539 149 HOH HOH . E 4 HOH A 140 540 145 HOH HOH . E 4 HOH A 141 541 77 HOH HOH . E 4 HOH A 142 542 73 HOH HOH . E 4 HOH A 143 543 138 HOH HOH . E 4 HOH A 144 544 61 HOH HOH . E 4 HOH A 145 545 186 HOH HOH . E 4 HOH A 146 546 110 HOH HOH . E 4 HOH A 147 547 166 HOH HOH . E 4 HOH A 148 548 37 HOH HOH . E 4 HOH A 149 549 130 HOH HOH . E 4 HOH A 150 550 171 HOH HOH . E 4 HOH A 151 551 125 HOH HOH . E 4 HOH A 152 552 134 HOH HOH . E 4 HOH A 153 553 121 HOH HOH . E 4 HOH A 154 554 146 HOH HOH . E 4 HOH A 155 555 184 HOH HOH . E 4 HOH A 156 556 116 HOH HOH . E 4 HOH A 157 557 123 HOH HOH . E 4 HOH A 158 558 147 HOH HOH . E 4 HOH A 159 559 165 HOH HOH . E 4 HOH A 160 560 89 HOH HOH . E 4 HOH A 161 561 142 HOH HOH . E 4 HOH A 162 562 38 HOH HOH . E 4 HOH A 163 563 178 HOH HOH . E 4 HOH A 164 564 96 HOH HOH . E 4 HOH A 165 565 143 HOH HOH . E 4 HOH A 166 566 182 HOH HOH . E 4 HOH A 167 567 133 HOH HOH . E 4 HOH A 168 568 111 HOH HOH . E 4 HOH A 169 569 173 HOH HOH . E 4 HOH A 170 570 107 HOH HOH . E 4 HOH A 171 571 158 HOH HOH . E 4 HOH A 172 572 139 HOH HOH . F 4 HOH P 1 401 81 HOH HOH . F 4 HOH P 2 402 43 HOH HOH . F 4 HOH P 3 403 85 HOH HOH . F 4 HOH P 4 404 106 HOH HOH . F 4 HOH P 5 405 76 HOH HOH . F 4 HOH P 6 406 62 HOH HOH . F 4 HOH P 7 407 154 HOH HOH . F 4 HOH P 8 408 161 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 42.765 _atom_site.Cartn_y -10.419 _atom_site.Cartn_z 10.651 _atom_site.occupancy 0 _atom_site.B_iso_or_equiv 20.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 454 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #