data_6ZVP # _model_server_result.job_id t1ySLw76k3SkeASuPFkn9Q _model_server_result.datetime_utc '2025-04-02 14:50:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 6ZVP # _exptl.entry_id 6ZVP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 153.178 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-DOPAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZVP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CE1 HIS 296 D HIS 335 1_555 F O2 LDP . D LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.228 ? covale ? covale2 A NE2 HIS 296 D HIS 335 1_555 F O2 LDP . D LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale3 B CE1 HIS 296 A HIS 335 1_555 H O2 LDP . A LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.228 ? covale ? covale4 B NE2 HIS 296 A HIS 335 1_555 H O2 LDP . A LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale5 C CE1 HIS 296 B HIS 335 1_555 J O2 LDP . B LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.228 ? covale ? covale6 C NE2 HIS 296 B HIS 335 1_555 J O2 LDP . B LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale7 D CE1 HIS 296 C HIS 335 1_555 L O2 LDP . C LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.228 ? covale ? covale8 D NE2 HIS 296 C HIS 335 1_555 L O2 LDP . C LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? metalc ? metalc1 A NE2 HIS 291 D HIS 330 1_555 E FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 A NE2 HIS 296 D HIS 335 1_555 E FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc3 A OE1 GLU 336 D GLU 375 1_555 E FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc4 A OE2 GLU 336 D GLU 375 1_555 E FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc5 E FE FE . D FE 501 1_555 F O1 LDP . D LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc6 E FE FE . D FE 501 1_555 F O2 LDP . D LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc7 B NE2 HIS 291 A HIS 330 1_555 G FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc8 B NE2 HIS 296 A HIS 335 1_555 G FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc9 B OE1 GLU 336 A GLU 375 1_555 G FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc10 B OE2 GLU 336 A GLU 375 1_555 G FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc11 G FE FE . A FE 501 1_555 H O1 LDP . A LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc12 G FE FE . A FE 501 1_555 H O2 LDP . A LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc13 C NE2 HIS 291 B HIS 330 1_555 I FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc14 C NE2 HIS 296 B HIS 335 1_555 I FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc15 C OE1 GLU 336 B GLU 375 1_555 I FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc16 C OE2 GLU 336 B GLU 375 1_555 I FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc17 I FE FE . B FE 501 1_555 J O1 LDP . B LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc18 I FE FE . B FE 501 1_555 J O2 LDP . B LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc19 D NE2 HIS 291 C HIS 330 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc20 D NE2 HIS 296 C HIS 335 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc21 D OE1 GLU 336 C GLU 375 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc22 D OE2 GLU 336 C GLU 375 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc23 K FE FE . C FE 501 1_555 L O1 LDP . C LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc24 K FE FE . C FE 501 1_555 L O2 LDP . C LDP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? # _chem_comp.formula 'C8 H11 N O2' _chem_comp.formula_weight 153.178 _chem_comp.id LDP _chem_comp.mon_nstd_flag . _chem_comp.name L-DOPAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPAMINE # _atom_sites.entry_id 6ZVP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FE D 1 501 699 FE FE . F 3 LDP D 1 502 701 LDP LDP . G 2 FE A 1 501 699 FE FE . H 3 LDP A 1 502 701 LDP LDP . I 2 FE B 1 501 699 FE FE . J 3 LDP B 1 502 701 LDP LDP . K 2 FE C 1 501 699 FE FE . L 3 LDP C 1 502 701 LDP LDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 LDP . . . L 3 117.427 103.975 65.015 1 403.5 ? C7 LDP 502 C 1 HETATM 2 C C1 LDP . . . L 3 117.296 102.561 65.575 1 274.97 ? C1 LDP 502 C 1 HETATM 3 C C4 LDP . . . L 3 117.068 99.996 66.586 1 198.95 ? C4 LDP 502 C 1 HETATM 4 C C2 LDP . . . L 3 118.427 101.787 65.76 1 224.03 ? C2 LDP 502 C 1 HETATM 5 C C6 LDP . . . L 3 116.049 102.052 65.896 1 283.99 ? C6 LDP 502 C 1 HETATM 6 C C5 LDP . . . L 3 115.935 100.769 66.402 1 259.63 ? C5 LDP 502 C 1 HETATM 7 C C3 LDP . . . L 3 118.313 100.505 66.263 1 233.16 ? C3 LDP 502 C 1 HETATM 8 O O1 LDP . . . L 3 119.458 99.722 66.45 1 315.7 ? O1 LDP 502 C 1 HETATM 9 O O2 LDP . . . L 3 116.958 98.699 67.099 1 132.58 ? O2 LDP 502 C 1 HETATM 10 C C8 LDP . . . L 3 117.844 104.927 66.133 1 404.81 ? C8 LDP 502 C 1 HETATM 11 N N1 LDP . . . L 3 116.795 104.985 67.135 1 315.76 ? N1 LDP 502 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 11 #