data_6ZWM
#
_model_server_result.job_id            vAi7JRJYaKmw4X2SJD039g 
_model_server_result.datetime_utc      '2024-11-05 13:57:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zwm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":4802}' 
#
_entry.id    6ZWM 
#
_exptl.entry_id    6ZWM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZWM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZWM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 K N N 
? 5 N N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 G N ALA 2 G ALA 2 1_555 Q C ACE . G ACE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 H N ALA 2 H ALA 2 1_555 R C ACE . H ACE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 E NE2 HIS 1515 E HIS 1515 1_555 M ZN ZN . E ZN 4801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc2 E SG CYS 1520 E CYS 1520 1_555 M ZN ZN . E ZN 4801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc3 E SG CYS 1523 E CYS 1523 1_555 M ZN ZN . E ZN 4801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc4 E SG CYS 1651 E CYS 1651 1_555 M ZN ZN . E ZN 4801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc5 F NE2 HIS 1515 F HIS 1515 1_555 O ZN ZN . F ZN 4801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc6 F SG CYS 1520 F CYS 1520 1_555 O ZN ZN . F ZN 4801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc7 F SG CYS 1523 F CYS 1523 1_555 O ZN ZN . F ZN 4801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc8 F SG CYS 1651 F CYS 1651 1_555 O ZN ZN . F ZN 4801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
_atom_sites.entry_id                     6ZWM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 AGS A 1 2601 3000 AGS AGS . 
J 6 IHP A 1 2602 2601 IHP IHP . 
K 5 AGS B 1 2601 3000 AGS AGS . 
L 6 IHP B 1 2602 2601 IHP IHP . 
M 7 ZN E 1 4801 4801 ZN ZN . 
N 5 AGS E 1 4802 3001 AGS AGS . 
O 7 ZN F 1 4801 4801 ZN ZN . 
P 5 AGS F 1 4802 3001 AGS AGS . 
Q 8 ACE G 1 601 1 ACE ACE . 
R 8 ACE H 1 601 1 ACE ACE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . N 5 123.228 197.922 276.553 1 243.76 0 PG AGS 4802 E 1 
HETATM 2 S S1G AGS . . . N 5 121.862 196.87 277.426 1 243.76 0 S1G AGS 4802 E 1 
HETATM 3 O O2G AGS . . . N 5 124.224 198.451 277.715 1 243.76 0 O2G AGS 4802 E 1 
HETATM 4 O O3G AGS . . . N 5 122.69 199.04 275.738 1 243.76 0 O3G AGS 4802 E 1 
HETATM 5 P PB AGS . . . N 5 125.215 195.947 276.336 1 243.76 0 PB AGS 4802 E 1 
HETATM 6 O O1B AGS . . . N 5 124.558 195.166 277.406 1 243.76 -1 O1B AGS 4802 E 1 
HETATM 7 O O2B AGS . . . N 5 126.395 196.778 276.651 1 243.76 0 O2B AGS 4802 E 1 
HETATM 8 O O3B AGS . . . N 5 124.111 196.902 275.653 1 243.76 0 O3B AGS 4802 E 1 
HETATM 9 P PA AGS . . . N 5 124.497 194.373 274.126 1 243.76 0 PA AGS 4802 E 1 
HETATM 10 O O1A AGS . . . N 5 123.222 194.232 274.863 1 243.76 -1 O1A AGS 4802 E 1 
HETATM 11 O O2A AGS . . . N 5 125.081 193.197 273.45 1 243.76 0 O2A AGS 4802 E 1 
HETATM 12 O O3A AGS . . . N 5 125.611 194.95 275.137 1 243.76 0 O3A AGS 4802 E 1 
HETATM 13 O O5' AGS . . . N 5 124.371 195.571 273.063 1 243.76 0 O5' AGS 4802 E 1 
HETATM 14 C C5' AGS . . . N 5 123.599 195.394 271.875 1 243.76 0 C5' AGS 4802 E 1 
HETATM 15 C C4' AGS . . . N 5 122.592 196.539 271.751 1 243.76 0 C4' AGS 4802 E 1 
HETATM 16 O O4' AGS . . . N 5 123.222 197.839 271.681 1 243.76 0 O4' AGS 4802 E 1 
HETATM 17 C C3' AGS . . . N 5 121.909 196.508 270.411 1 243.76 0 C3' AGS 4802 E 1 
HETATM 18 O O3' AGS . . . N 5 121.063 195.357 270.281 1 243.76 0 O3' AGS 4802 E 1 
HETATM 19 C C2' AGS . . . N 5 121.105 197.76 270.602 1 243.76 0 C2' AGS 4802 E 1 
HETATM 20 O O2' AGS . . . N 5 120.208 197.567 271.705 1 243.76 0 O2' AGS 4802 E 1 
HETATM 21 C C1' AGS . . . N 5 122.238 198.704 271.018 1 243.76 0 C1' AGS 4802 E 1 
HETATM 22 N N9 AGS . . . N 5 122.87 199.402 269.855 1 243.76 0 N9 AGS 4802 E 1 
HETATM 23 C C8 AGS . . . N 5 122.38 200.551 269.398 1 243.76 0 C8 AGS 4802 E 1 
HETATM 24 N N7 AGS . . . N 5 123.126 200.944 268.371 1 243.76 0 N7 AGS 4802 E 1 
HETATM 25 C C5 AGS . . . N 5 124.082 200.04 268.185 1 243.76 0 C5 AGS 4802 E 1 
HETATM 26 C C6 AGS . . . N 5 125.07 199.976 267.293 1 243.76 0 C6 AGS 4802 E 1 
HETATM 27 N N6 AGS . . . N 5 125.142 200.978 266.421 1 243.76 0 N6 AGS 4802 E 1 
HETATM 28 N N1 AGS . . . N 5 125.945 198.961 267.273 1 243.76 0 N1 AGS 4802 E 1 
HETATM 29 C C2 AGS . . . N 5 125.814 197.943 268.216 1 243.76 0 C2 AGS 4802 E 1 
HETATM 30 N N3 AGS . . . N 5 124.768 198.036 269.139 1 243.76 0 N3 AGS 4802 E 1 
HETATM 31 C C4 AGS . . . N 5 123.927 199.083 269.103 1 243.76 0 C4 AGS 4802 E 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    88 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#