data_6ZX9 # _model_server_result.job_id K149XlMM9xGzE71yqcVl4Q _model_server_result.datetime_utc '2024-10-16 23:37:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1205}' # _entry.id 6ZX9 # _exptl.entry_id 6ZX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZX9 _cell.length_a 265.898 _cell.length_b 95.54 _cell.length_c 98.348 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ND1 HIS 204 C HIS 38 1_555 K ZN ZN . C ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 C NE2 HIS 250 C HIS 84 1_555 K ZN ZN . C ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 C SG CYS 255 C CYS 89 1_555 K ZN ZN . C ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc4 C ND1 HIS 257 C HIS 91 1_555 K ZN ZN . C ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6ZX9 _atom_sites.fract_transf_matrix[1][1] 0.003761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 1201 201 GOL GOL . E 4 GOL A 1 1202 301 GOL GOL . F 4 GOL A 1 1203 401 GOL GOL . G 4 GOL A 1 1204 501 GOL GOL . H 4 GOL A 1 1205 601 GOL GOL . I 4 GOL A 1 1206 701 GOL GOL . J 4 GOL B 1 1501 1401 GOL GOL . K 5 ZN C 1 101 3 ZN ZN . L 4 GOL C 1 102 101 GOL GOL . M 6 HOH A 1 1301 285 HOH HOH . M 6 HOH A 2 1302 271 HOH HOH . M 6 HOH A 3 1303 225 HOH HOH . M 6 HOH A 4 1304 86 HOH HOH . M 6 HOH A 5 1305 298 HOH HOH . M 6 HOH A 6 1306 44 HOH HOH . M 6 HOH A 7 1307 111 HOH HOH . M 6 HOH A 8 1308 124 HOH HOH . M 6 HOH A 9 1309 152 HOH HOH . M 6 HOH A 10 1310 232 HOH HOH . M 6 HOH A 11 1311 206 HOH HOH . M 6 HOH A 12 1312 65 HOH HOH . M 6 HOH A 13 1313 106 HOH HOH . M 6 HOH A 14 1314 257 HOH HOH . M 6 HOH A 15 1315 249 HOH HOH . M 6 HOH A 16 1316 62 HOH HOH . M 6 HOH A 17 1317 102 HOH HOH . M 6 HOH A 18 1318 136 HOH HOH . M 6 HOH A 19 1319 39 HOH HOH . M 6 HOH A 20 1320 59 HOH HOH . M 6 HOH A 21 1321 25 HOH HOH . M 6 HOH A 22 1322 142 HOH HOH . M 6 HOH A 23 1323 101 HOH HOH . M 6 HOH A 24 1324 9 HOH HOH . M 6 HOH A 25 1325 41 HOH HOH . M 6 HOH A 26 1326 219 HOH HOH . M 6 HOH A 27 1327 221 HOH HOH . M 6 HOH A 28 1328 49 HOH HOH . M 6 HOH A 29 1329 179 HOH HOH . M 6 HOH A 30 1330 60 HOH HOH . M 6 HOH A 31 1331 192 HOH HOH . M 6 HOH A 32 1332 54 HOH HOH . M 6 HOH A 33 1333 213 HOH HOH . M 6 HOH A 34 1334 262 HOH HOH . M 6 HOH A 35 1335 17 HOH HOH . M 6 HOH A 36 1336 181 HOH HOH . M 6 HOH A 37 1337 93 HOH HOH . M 6 HOH A 38 1338 22 HOH HOH . M 6 HOH A 39 1339 301 HOH HOH . M 6 HOH A 40 1340 250 HOH HOH . M 6 HOH A 41 1341 173 HOH HOH . M 6 HOH A 42 1342 50 HOH HOH . M 6 HOH A 43 1343 234 HOH HOH . M 6 HOH A 44 1344 268 HOH HOH . M 6 HOH A 45 1345 291 HOH HOH . M 6 HOH A 46 1346 266 HOH HOH . M 6 HOH A 47 1347 13 HOH HOH . M 6 HOH A 48 1348 174 HOH HOH . M 6 HOH A 49 1349 64 HOH HOH . M 6 HOH A 50 1350 43 HOH HOH . M 6 HOH A 51 1351 134 HOH HOH . M 6 HOH A 52 1352 258 HOH HOH . M 6 HOH A 53 1353 56 HOH HOH . M 6 HOH A 54 1354 104 HOH HOH . M 6 HOH A 55 1355 18 HOH HOH . M 6 HOH A 56 1356 117 HOH HOH . M 6 HOH A 57 1357 67 HOH HOH . M 6 HOH A 58 1358 293 HOH HOH . M 6 HOH A 59 1359 31 HOH HOH . M 6 HOH A 60 1360 208 HOH HOH . M 6 HOH A 61 1361 218 HOH HOH . M 6 HOH A 62 1362 248 HOH HOH . M 6 HOH A 63 1363 202 HOH HOH . M 6 HOH A 64 1364 163 HOH HOH . M 6 HOH A 65 1365 32 HOH HOH . M 6 HOH A 66 1366 259 HOH HOH . M 6 HOH A 67 1367 241 HOH HOH . M 6 HOH A 68 1368 190 HOH HOH . M 6 HOH A 69 1369 180 HOH HOH . M 6 HOH A 70 1370 90 HOH HOH . M 6 HOH A 71 1371 38 HOH HOH . M 6 HOH A 72 1372 198 HOH HOH . M 6 HOH A 73 1373 283 HOH HOH . M 6 HOH A 74 1374 147 HOH HOH . M 6 HOH A 75 1375 8 HOH HOH . M 6 HOH A 76 1376 270 HOH HOH . M 6 HOH A 77 1377 188 HOH HOH . M 6 HOH A 78 1378 237 HOH HOH . M 6 HOH A 79 1379 215 HOH HOH . M 6 HOH A 80 1380 162 HOH HOH . M 6 HOH A 81 1381 47 HOH HOH . M 6 HOH A 82 1382 100 HOH HOH . M 6 HOH A 83 1383 210 HOH HOH . M 6 HOH A 84 1384 222 HOH HOH . M 6 HOH A 85 1385 109 HOH HOH . M 6 HOH A 86 1386 318 HOH HOH . M 6 HOH A 87 1387 238 HOH HOH . M 6 HOH A 88 1388 23 HOH HOH . M 6 HOH A 89 1389 91 HOH HOH . M 6 HOH A 90 1390 292 HOH HOH . M 6 HOH A 91 1391 154 HOH HOH . M 6 HOH A 92 1392 116 HOH HOH . M 6 HOH A 93 1393 204 HOH HOH . M 6 HOH A 94 1394 309 HOH HOH . M 6 HOH A 95 1395 89 HOH HOH . M 6 HOH A 96 1396 61 HOH HOH . M 6 HOH A 97 1397 51 HOH HOH . M 6 HOH A 98 1398 58 HOH HOH . M 6 HOH A 99 1399 71 HOH HOH . M 6 HOH A 100 1400 52 HOH HOH . M 6 HOH A 101 1401 171 HOH HOH . M 6 HOH A 102 1402 126 HOH HOH . M 6 HOH A 103 1403 57 HOH HOH . M 6 HOH A 104 1404 63 HOH HOH . M 6 HOH A 105 1405 66 HOH HOH . M 6 HOH A 106 1406 201 HOH HOH . M 6 HOH A 107 1407 296 HOH HOH . M 6 HOH A 108 1408 15 HOH HOH . M 6 HOH A 109 1409 182 HOH HOH . M 6 HOH A 110 1410 191 HOH HOH . M 6 HOH A 111 1411 121 HOH HOH . M 6 HOH A 112 1412 281 HOH HOH . M 6 HOH A 113 1413 183 HOH HOH . M 6 HOH A 114 1414 35 HOH HOH . M 6 HOH A 115 1415 289 HOH HOH . M 6 HOH A 116 1416 79 HOH HOH . M 6 HOH A 117 1417 29 HOH HOH . M 6 HOH A 118 1418 211 HOH HOH . M 6 HOH A 119 1419 165 HOH HOH . M 6 HOH A 120 1420 30 HOH HOH . M 6 HOH A 121 1421 297 HOH HOH . M 6 HOH A 122 1422 287 HOH HOH . M 6 HOH A 123 1423 115 HOH HOH . M 6 HOH A 124 1424 212 HOH HOH . M 6 HOH A 125 1425 255 HOH HOH . M 6 HOH A 126 1426 153 HOH HOH . M 6 HOH A 127 1427 113 HOH HOH . M 6 HOH A 128 1428 84 HOH HOH . M 6 HOH A 129 1429 87 HOH HOH . M 6 HOH A 130 1430 70 HOH HOH . M 6 HOH A 131 1431 72 HOH HOH . M 6 HOH A 132 1432 19 HOH HOH . M 6 HOH A 133 1433 125 HOH HOH . M 6 HOH A 134 1434 24 HOH HOH . M 6 HOH A 135 1435 5 HOH HOH . M 6 HOH A 136 1436 150 HOH HOH . M 6 HOH A 137 1437 16 HOH HOH . M 6 HOH A 138 1438 176 HOH HOH . M 6 HOH A 139 1439 294 HOH HOH . M 6 HOH A 140 1440 55 HOH HOH . M 6 HOH A 141 1441 27 HOH HOH . M 6 HOH A 142 1442 123 HOH HOH . M 6 HOH A 143 1443 82 HOH HOH . M 6 HOH A 144 1444 143 HOH HOH . M 6 HOH A 145 1445 98 HOH HOH . M 6 HOH A 146 1446 122 HOH HOH . M 6 HOH A 147 1447 199 HOH HOH . M 6 HOH A 148 1448 99 HOH HOH . M 6 HOH A 149 1449 2 HOH HOH . M 6 HOH A 150 1450 161 HOH HOH . M 6 HOH A 151 1451 300 HOH HOH . M 6 HOH A 152 1452 4 HOH HOH . M 6 HOH A 153 1453 260 HOH HOH . M 6 HOH A 154 1454 252 HOH HOH . M 6 HOH A 155 1455 33 HOH HOH . M 6 HOH A 156 1456 229 HOH HOH . M 6 HOH A 157 1457 303 HOH HOH . M 6 HOH A 158 1458 160 HOH HOH . M 6 HOH A 159 1459 53 HOH HOH . M 6 HOH A 160 1460 68 HOH HOH . M 6 HOH A 161 1461 245 HOH HOH . M 6 HOH A 162 1462 127 HOH HOH . M 6 HOH A 163 1463 26 HOH HOH . M 6 HOH A 164 1464 107 HOH HOH . M 6 HOH A 165 1465 46 HOH HOH . M 6 HOH A 166 1466 133 HOH HOH . M 6 HOH A 167 1467 1 HOH HOH . M 6 HOH A 168 1468 310 HOH HOH . M 6 HOH A 169 1469 167 HOH HOH . M 6 HOH A 170 1470 10 HOH HOH . M 6 HOH A 171 1471 7 HOH HOH . M 6 HOH A 172 1472 189 HOH HOH . M 6 HOH A 173 1473 37 HOH HOH . M 6 HOH A 174 1474 131 HOH HOH . M 6 HOH A 175 1475 156 HOH HOH . M 6 HOH A 176 1476 353 HOH HOH . M 6 HOH A 177 1477 48 HOH HOH . M 6 HOH A 178 1478 40 HOH HOH . M 6 HOH A 179 1479 76 HOH HOH . M 6 HOH A 180 1480 193 HOH HOH . M 6 HOH A 181 1481 108 HOH HOH . M 6 HOH A 182 1482 130 HOH HOH . M 6 HOH A 183 1483 196 HOH HOH . M 6 HOH A 184 1484 21 HOH HOH . M 6 HOH A 185 1485 203 HOH HOH . M 6 HOH A 186 1486 140 HOH HOH . M 6 HOH A 187 1487 207 HOH HOH . M 6 HOH A 188 1488 274 HOH HOH . M 6 HOH A 189 1489 69 HOH HOH . M 6 HOH A 190 1490 85 HOH HOH . M 6 HOH A 191 1491 184 HOH HOH . M 6 HOH A 192 1492 96 HOH HOH . M 6 HOH A 193 1493 138 HOH HOH . M 6 HOH A 194 1494 352 HOH HOH . M 6 HOH A 195 1495 307 HOH HOH . M 6 HOH A 196 1496 114 HOH HOH . M 6 HOH A 197 1497 157 HOH HOH . M 6 HOH A 198 1498 132 HOH HOH . M 6 HOH A 199 1499 185 HOH HOH . M 6 HOH A 200 1500 263 HOH HOH . M 6 HOH A 201 1501 187 HOH HOH . M 6 HOH A 202 1502 351 HOH HOH . N 6 HOH B 1 1601 169 HOH HOH . N 6 HOH B 2 1602 251 HOH HOH . N 6 HOH B 3 1603 12 HOH HOH . N 6 HOH B 4 1604 253 HOH HOH . N 6 HOH B 5 1605 164 HOH HOH . N 6 HOH B 6 1606 304 HOH HOH . N 6 HOH B 7 1607 340 HOH HOH . N 6 HOH B 8 1608 254 HOH HOH . N 6 HOH B 9 1609 75 HOH HOH . N 6 HOH B 10 1610 110 HOH HOH . N 6 HOH B 11 1611 14 HOH HOH . N 6 HOH B 12 1612 11 HOH HOH . N 6 HOH B 13 1613 94 HOH HOH . N 6 HOH B 14 1614 95 HOH HOH . N 6 HOH B 15 1615 137 HOH HOH . N 6 HOH B 16 1616 112 HOH HOH . N 6 HOH B 17 1617 235 HOH HOH . N 6 HOH B 18 1618 74 HOH HOH . N 6 HOH B 19 1619 34 HOH HOH . N 6 HOH B 20 1620 244 HOH HOH . N 6 HOH B 21 1621 227 HOH HOH . N 6 HOH B 22 1622 195 HOH HOH . N 6 HOH B 23 1623 313 HOH HOH . N 6 HOH B 24 1624 214 HOH HOH . N 6 HOH B 25 1625 80 HOH HOH . N 6 HOH B 26 1626 88 HOH HOH . N 6 HOH B 27 1627 20 HOH HOH . N 6 HOH B 28 1628 308 HOH HOH . N 6 HOH B 29 1629 92 HOH HOH . N 6 HOH B 30 1630 149 HOH HOH . N 6 HOH B 31 1631 105 HOH HOH . N 6 HOH B 32 1632 97 HOH HOH . N 6 HOH B 33 1633 231 HOH HOH . N 6 HOH B 34 1634 155 HOH HOH . N 6 HOH B 35 1635 216 HOH HOH . N 6 HOH B 36 1636 209 HOH HOH . N 6 HOH B 37 1637 217 HOH HOH . O 6 HOH C 1 201 172 HOH HOH . O 6 HOH C 2 202 42 HOH HOH . O 6 HOH C 3 203 159 HOH HOH . O 6 HOH C 4 204 139 HOH HOH . O 6 HOH C 5 205 83 HOH HOH . O 6 HOH C 6 206 73 HOH HOH . O 6 HOH C 7 207 194 HOH HOH . O 6 HOH C 8 208 36 HOH HOH . O 6 HOH C 9 209 228 HOH HOH . O 6 HOH C 10 210 158 HOH HOH . O 6 HOH C 11 211 175 HOH HOH . O 6 HOH C 12 212 186 HOH HOH . O 6 HOH C 13 213 290 HOH HOH . O 6 HOH C 14 214 328 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 550.631 31.504 6.904 1 71.1 ? C1 GOL 1205 A 1 HETATM 2 O O1 GOL . . . H 4 549.399 31.738 7.518 1 69.51 ? O1 GOL 1205 A 1 HETATM 3 C C2 GOL . . . H 4 550.334 30.785 5.565 1 74.35 ? C2 GOL 1205 A 1 HETATM 4 O O2 GOL . . . H 4 551.016 31.36 4.502 1 74.97 ? O2 GOL 1205 A 1 HETATM 5 C C3 GOL . . . H 4 550.742 29.304 5.797 1 76.48 ? C3 GOL 1205 A 1 HETATM 6 O O3 GOL . . . H 4 552.121 29.289 6.017 1 73.3 ? O3 GOL 1205 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #