data_6ZXA
#
_model_server_result.job_id            jM2-TVpFwATgeLEOXQeTIw 
_model_server_result.datetime_utc      '2024-11-15 17:44:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zxa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":101}' 
#
_entry.id    6ZXA 
#
_exptl.entry_id    6ZXA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              578.866 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'all-trans okenone' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZXA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZXA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 T N N 
? 5 X N N 
? 5 AA N N 
? 5 FA N N 
? 5 KA N N 
? 5 RA N N 
? 5 UA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 21 A ASP 21 1_555 O MG BCL . A BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? 
metalc ? metalc2 C OD2 ASP 21 C ASP 21 1_555 U MG BCL . C BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? 
metalc ? metalc3 E OD2 ASP 21 E ASP 21 1_555 Y MG BCL . E BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc4 G OD2 ASP 21 G ASP 21 1_555 DA MG BCL . G BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc5 I OD2 ASP 21 I ASP 21 1_555 IA MG BCL . I BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
metalc ? metalc6 K OD2 ASP 21 K ASP 21 1_555 NA MG BCL . K BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc7 M OD2 ASP 21 M ASP 21 1_555 SA MG BCL . M BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
#
_chem_comp.formula           'C41 H54 O2' 
_chem_comp.formula_weight    578.866 
_chem_comp.id                QSE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'all-trans okenone' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C40 C36 QSE sing 507 n n 
C39 C37 QSE sing 508 n n 
C36 C37 QSE doub 509 n y 
C36 C35 QSE sing 510 n y 
C37 C38 QSE sing 511 n y 
C35 C34 QSE doub 512 n y 
C38 C41 QSE sing 513 n n 
C38 C1 QSE doub 514 n y 
C34 C1 QSE sing 515 n y 
C1 C2 QSE sing 516 n n 
C2 C3 QSE doub 517 e n 
C3 C4 QSE sing 518 n n 
C4 C5 QSE doub 519 e n 
C4 C25 QSE sing 520 n n 
C5 C6 QSE sing 521 n n 
C6 C7 QSE doub 522 e n 
C7 C8 QSE sing 523 n n 
C8 C9 QSE doub 524 e n 
C8 C26 QSE sing 525 n n 
C9 C10 QSE sing 526 n n 
C10 C11 QSE doub 527 e n 
C11 C12 QSE sing 528 n n 
C27 C13 QSE sing 529 n n 
C12 C13 QSE doub 530 e n 
C13 C14 QSE sing 531 n n 
C14 C15 QSE doub 532 e n 
C15 C16 QSE sing 533 n n 
C16 C17 QSE doub 534 e n 
C28 C17 QSE sing 535 n n 
C17 C18 QSE sing 536 n n 
C18 C19 QSE doub 537 e n 
C19 C20 QSE sing 538 n n 
C20 C21 QSE doub 539 e n 
C29 C21 QSE sing 540 n n 
C21 C22 QSE sing 541 n n 
C22 O33 QSE doub 542 n n 
C22 C23 QSE sing 543 n n 
C43 O42 QSE sing 544 n n 
C23 C24 QSE sing 545 n n 
O42 C30 QSE sing 546 n n 
C32 C30 QSE sing 547 n n 
C30 C24 QSE sing 548 n n 
C30 C31 QSE sing 549 n n 
C10 H1 QSE sing 550 n n 
C11 H2 QSE sing 551 n n 
C12 H3 QSE sing 552 n n 
C14 H4 QSE sing 553 n n 
C15 H5 QSE sing 554 n n 
C16 H6 QSE sing 555 n n 
C18 H7 QSE sing 556 n n 
C19 H8 QSE sing 557 n n 
C2 H9 QSE sing 558 n n 
C20 H10 QSE sing 559 n n 
C23 H11 QSE sing 560 n n 
C23 H12 QSE sing 561 n n 
C24 H13 QSE sing 562 n n 
C24 H14 QSE sing 563 n n 
C25 H15 QSE sing 564 n n 
C25 H16 QSE sing 565 n n 
C25 H17 QSE sing 566 n n 
C26 H18 QSE sing 567 n n 
C26 H19 QSE sing 568 n n 
C26 H20 QSE sing 569 n n 
C27 H21 QSE sing 570 n n 
C27 H22 QSE sing 571 n n 
C27 H23 QSE sing 572 n n 
C28 H24 QSE sing 573 n n 
C28 H25 QSE sing 574 n n 
C28 H26 QSE sing 575 n n 
C29 H27 QSE sing 576 n n 
C29 H28 QSE sing 577 n n 
C29 H29 QSE sing 578 n n 
C3 H30 QSE sing 579 n n 
C31 H31 QSE sing 580 n n 
C31 H32 QSE sing 581 n n 
C31 H33 QSE sing 582 n n 
C32 H34 QSE sing 583 n n 
C32 H35 QSE sing 584 n n 
C32 H36 QSE sing 585 n n 
C34 H37 QSE sing 586 n n 
C35 H38 QSE sing 587 n n 
C39 H39 QSE sing 588 n n 
C39 H40 QSE sing 589 n n 
C39 H41 QSE sing 590 n n 
C40 H42 QSE sing 591 n n 
C40 H43 QSE sing 592 n n 
C40 H44 QSE sing 593 n n 
C41 H45 QSE sing 594 n n 
C41 H46 QSE sing 595 n n 
C41 H47 QSE sing 596 n n 
C43 H48 QSE sing 597 n n 
C43 H49 QSE sing 598 n n 
C43 H50 QSE sing 599 n n 
C5 H51 QSE sing 600 n n 
C6 H52 QSE sing 601 n n 
C7 H53 QSE sing 602 n n 
C9 H54 QSE sing 603 n n 
#
_atom_sites.entry_id                     6ZXA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 3 BCL A 1 101 1699 BCL BCL . 
P 4 QS2 A 1 102 1700 QS2 OK7 . 
Q 3 BCL B 1 101 1538 BCL BCL . 
R 3 BCL B 1 102 1600 BCL BCL . 
S 4 QS2 B 1 103 1700 QS2 OK7 . 
T 5 QSE C 1 101 1036 QSE OKE . 
U 3 BCL C 1 102 1699 BCL BCL . 
V 3 BCL D 1 101 1538 BCL BCL . 
W 3 BCL D 1 102 1600 BCL BCL . 
X 5 QSE E 1 101 1036 QSE OKE . 
Y 3 BCL E 1 102 1699 BCL BCL . 
Z 4 QS2 E 1 103 1700 QS2 OK7 . 
AA 5 QSE F 1 101 1036 QSE OKE . 
BA 3 BCL F 1 102 1538 BCL BCL . 
CA 3 BCL F 1 103 1600 BCL BCL . 
DA 3 BCL G 1 101 1699 BCL BCL . 
EA 4 QS2 G 1 102 1700 QS2 OK7 . 
FA 5 QSE H 1 101 1036 QSE OKE . 
GA 3 BCL H 1 102 1538 BCL BCL . 
HA 3 BCL H 1 103 1600 BCL BCL . 
IA 3 BCL I 1 101 1699 BCL BCL . 
JA 4 QS2 I 1 102 1700 QS2 OK7 . 
KA 5 QSE J 1 101 1036 QSE OKE . 
LA 3 BCL J 1 102 1538 BCL BCL . 
MA 3 BCL J 1 103 1600 BCL BCL . 
NA 3 BCL K 1 101 1699 BCL BCL . 
OA 4 QS2 K 1 102 1701 QS2 OK7 . 
PA 3 BCL L 1 101 1538 BCL BCL . 
QA 3 BCL L 1 102 1600 BCL BCL . 
RA 5 QSE M 1 101 1036 QSE OKE . 
SA 3 BCL M 1 102 1699 BCL BCL . 
TA 4 QS2 M 1 103 1700 QS2 OK7 . 
UA 5 QSE N 1 101 1036 QSE OKE . 
VA 3 BCL N 1 102 1538 BCL BCL . 
WA 3 BCL N 1 103 1600 BCL BCL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 QSE . . . KA 5 153.081 182.481 160.222 1 19.13 ? C10 QSE 101 J 1 
HETATM 2 C C1 QSE . . . KA 5 146.882 179.316 151.539 1 29.45 ? C1 QSE 101 J 1 
HETATM 3 C C11 QSE . . . KA 5 154.279 183.025 160.478 1 19.65 ? C11 QSE 101 J 1 
HETATM 4 C C12 QSE . . . KA 5 154.765 183.124 161.795 1 20.68 ? C12 QSE 101 J 1 
HETATM 5 C C13 QSE . . . KA 5 155.95 183.615 162.22 1 22.15 ? C13 QSE 101 J 1 
HETATM 6 C C14 QSE . . . KA 5 156.262 183.49 163.628 1 21.29 ? C14 QSE 101 J 1 
HETATM 7 C C15 QSE . . . KA 5 157.4 183.748 164.267 1 21.68 ? C15 QSE 101 J 1 
HETATM 8 C C16 QSE . . . KA 5 157.463 183.527 165.664 1 19.29 ? C16 QSE 101 J 1 
HETATM 9 C C17 QSE . . . KA 5 158.51 183.706 166.5 1 18.57 ? C17 QSE 101 J 1 
HETATM 10 C C18 QSE . . . KA 5 158.355 183.301 167.881 1 14.99 ? C18 QSE 101 J 1 
HETATM 11 C C19 QSE . . . KA 5 159.275 183.276 168.835 1 14.61 ? C19 QSE 101 J 1 
HETATM 12 C C2 QSE . . . KA 5 147.541 179.288 152.849 1 25.49 ? C2 QSE 101 J 1 
HETATM 13 C C20 QSE . . . KA 5 158.97 182.835 170.144 1 15.15 ? C20 QSE 101 J 1 
HETATM 14 C C21 QSE . . . KA 5 159.784 182.748 171.162 1 16.04 ? C21 QSE 101 J 1 
HETATM 15 C C22 QSE . . . KA 5 159.285 182.235 172.467 1 18.59 ? C22 QSE 101 J 1 
HETATM 16 C C23 QSE . . . KA 5 160.274 182.112 173.593 1 19.32 ? C23 QSE 101 J 1 
HETATM 17 C C24 QSE . . . KA 5 159.84 181.271 174.793 1 20.28 ? C24 QSE 101 J 1 
HETATM 18 C C25 QSE . . . KA 5 147.704 179.213 155.692 1 18.94 ? C25 QSE 101 J 1 
HETATM 19 C C26 QSE . . . KA 5 150.398 181.217 159.66 1 16.93 ? C26 QSE 101 J 1 
HETATM 20 C C27 QSE . . . KA 5 156.982 184.211 161.306 1 17.76 ? C27 QSE 101 J 1 
HETATM 21 C C28 QSE . . . KA 5 159.841 184.243 166.06 1 17.08 ? C28 QSE 101 J 1 
HETATM 22 C C29 QSE . . . KA 5 161.23 183.12 171.095 1 15.97 ? C29 QSE 101 J 1 
HETATM 23 C C3 QSE . . . KA 5 148.305 180.192 153.448 1 24.68 ? C3 QSE 101 J 1 
HETATM 24 C C30 QSE . . . KA 5 159.907 179.756 174.595 1 27.83 ? C30 QSE 101 J 1 
HETATM 25 C C31 QSE . . . KA 5 159.485 179.013 175.842 1 24.25 ? C31 QSE 101 J 1 
HETATM 26 C C32 QSE . . . KA 5 161.282 179.306 174.139 1 25.26 ? C32 QSE 101 J 1 
HETATM 27 C C34 QSE . . . KA 5 145.52 179.01 151.46 1 29.44 ? C34 QSE 101 J 1 
HETATM 28 C C35 QSE . . . KA 5 144.881 178.946 150.24 1 33.65 ? C35 QSE 101 J 1 
HETATM 29 C C36 QSE . . . KA 5 145.562 179.194 149.056 1 36.19 ? C36 QSE 101 J 1 
HETATM 30 C C37 QSE . . . KA 5 146.926 179.505 149.106 1 33.16 ? C37 QSE 101 J 1 
HETATM 31 C C38 QSE . . . KA 5 147.595 179.57 150.337 1 29.78 ? C38 QSE 101 J 1 
HETATM 32 C C39 QSE . . . KA 5 147.666 179.772 147.82 1 28.42 ? C39 QSE 101 J 1 
HETATM 33 C C4 QSE . . . KA 5 148.567 180.123 154.867 1 20.69 ? C4 QSE 101 J 1 
HETATM 34 C C40 QSE . . . KA 5 144.827 179.151 147.746 1 39.52 ? C40 QSE 101 J 1 
HETATM 35 C C41 QSE . . . KA 5 149.065 179.892 150.366 1 32.58 ? C41 QSE 101 J 1 
HETATM 36 C C43 QSE . . . KA 5 159.18 178.726 172.5 1 33.35 ? C43 QSE 101 J 1 
HETATM 37 C C5 QSE . . . KA 5 149.564 180.863 155.4 1 20.27 ? C5 QSE 101 J 1 
HETATM 38 C C6 QSE . . . KA 5 149.931 180.941 156.765 1 20.41 ? C6 QSE 101 J 1 
HETATM 39 C C7 QSE . . . KA 5 150.941 181.662 157.237 1 20.09 ? C7 QSE 101 J 1 
HETATM 40 C C8 QSE . . . KA 5 151.335 181.768 158.624 1 20.1 ? C8 QSE 101 J 1 
HETATM 41 C C9 QSE . . . KA 5 152.525 182.326 158.936 1 18.63 ? C9 QSE 101 J 1 
HETATM 42 O O33 QSE . . . KA 5 158.112 181.943 172.616 1 19.38 ? O33 QSE 101 J 1 
HETATM 43 O O42 QSE . . . KA 5 158.909 179.539 173.633 1 26.62 ? O42 QSE 101 J 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           51 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           452 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           43 
#