data_6ZXA
#
_model_server_result.job_id            boX8mTp7l_5L7XGmctgHEQ 
_model_server_result.datetime_utc      '2024-11-15 17:58:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zxa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":102}' 
#
_entry.id    6ZXA 
#
_exptl.entry_id    6ZXA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              578.866 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            9-cis-okenone 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZXA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZXA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 P N N 
? 4 S N N 
? 4 Z N N 
? 4 EA N N 
? 4 JA N N 
? 4 OA N N 
? 4 TA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 21 A ASP 21 1_555 O MG BCL . A BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? 
metalc ? metalc2 C OD2 ASP 21 C ASP 21 1_555 U MG BCL . C BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? 
metalc ? metalc3 E OD2 ASP 21 E ASP 21 1_555 Y MG BCL . E BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc4 G OD2 ASP 21 G ASP 21 1_555 DA MG BCL . G BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc5 I OD2 ASP 21 I ASP 21 1_555 IA MG BCL . I BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
metalc ? metalc6 K OD2 ASP 21 K ASP 21 1_555 NA MG BCL . K BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc7 M OD2 ASP 21 M ASP 21 1_555 SA MG BCL . M BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
#
_chem_comp.formula           'C41 H54 O2' 
_chem_comp.formula_weight    578.866 
_chem_comp.id                QS2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              9-cis-okenone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C31 O25 QS2 sing 410 n n 
O25 C1 QS2 sing 411 n n 
C24 C1 QS2 sing 412 n n 
C1 C23 QS2 sing 413 n n 
C1 C2 QS2 sing 414 n n 
O32 C4 QS2 doub 415 n n 
C3 C2 QS2 sing 416 n n 
C3 C4 QS2 sing 417 n n 
C4 C5 QS2 sing 418 n n 
C5 C6 QS2 doub 419 e n 
C5 C26 QS2 sing 420 n n 
C6 C7 QS2 sing 421 n n 
C41 C38 QS2 sing 422 n n 
C7 C8 QS2 doub 423 e n 
C8 C9 QS2 sing 424 n n 
C37 C38 QS2 doub 425 n y 
C37 C36 QS2 sing 426 n y 
C10 C9 QS2 doub 427 e n 
C10 C11 QS2 sing 428 n n 
C38 C39 QS2 sing 429 n y 
C9 C27 QS2 sing 430 n n 
C29 C18 QS2 sing 431 n n 
C36 C35 QS2 doub 432 n y 
C12 C11 QS2 doub 433 e n 
C12 C13 QS2 sing 434 n n 
C14 C13 QS2 doub 435 e n 
C14 C15 QS2 sing 436 n n 
C16 C15 QS2 doub 437 e n 
C16 C17 QS2 sing 438 n n 
C13 C28 QS2 sing 439 n n 
C18 C17 QS2 doub 440 e n 
C18 C19 QS2 sing 441 n n 
C39 C42 QS2 sing 442 n n 
C39 C40 QS2 doub 443 n y 
C35 C40 QS2 sing 444 n y 
C35 C33 QS2 sing 445 n n 
C19 C20 QS2 doub 446 e n 
C20 C21 QS2 sing 447 n n 
C40 C43 QS2 sing 448 n n 
C30 C33 QS2 doub 449 e n 
C30 C22 QS2 sing 450 n n 
C21 C22 QS2 doub 451 z n 
C22 C34 QS2 sing 452 n n 
C10 H1 QS2 sing 453 n n 
C11 H2 QS2 sing 454 n n 
C12 H3 QS2 sing 455 n n 
C14 H4 QS2 sing 456 n n 
C15 H5 QS2 sing 457 n n 
C16 H6 QS2 sing 458 n n 
C17 H7 QS2 sing 459 n n 
C19 H8 QS2 sing 460 n n 
C2 H9 QS2 sing 461 n n 
C2 H10 QS2 sing 462 n n 
C20 H11 QS2 sing 463 n n 
C21 H12 QS2 sing 464 n n 
C23 H13 QS2 sing 465 n n 
C23 H14 QS2 sing 466 n n 
C23 H15 QS2 sing 467 n n 
C24 H16 QS2 sing 468 n n 
C24 H17 QS2 sing 469 n n 
C24 H18 QS2 sing 470 n n 
C26 H19 QS2 sing 471 n n 
C26 H20 QS2 sing 472 n n 
C26 H21 QS2 sing 473 n n 
C27 H22 QS2 sing 474 n n 
C27 H23 QS2 sing 475 n n 
C27 H24 QS2 sing 476 n n 
C28 H25 QS2 sing 477 n n 
C28 H26 QS2 sing 478 n n 
C28 H27 QS2 sing 479 n n 
C29 H28 QS2 sing 480 n n 
C29 H29 QS2 sing 481 n n 
C29 H30 QS2 sing 482 n n 
C3 H31 QS2 sing 483 n n 
C3 H32 QS2 sing 484 n n 
C30 H33 QS2 sing 485 n n 
C31 H34 QS2 sing 486 n n 
C31 H35 QS2 sing 487 n n 
C31 H36 QS2 sing 488 n n 
C33 H37 QS2 sing 489 n n 
C34 H38 QS2 sing 490 n n 
C34 H39 QS2 sing 491 n n 
C34 H40 QS2 sing 492 n n 
C36 H41 QS2 sing 493 n n 
C37 H42 QS2 sing 494 n n 
C41 H43 QS2 sing 495 n n 
C41 H44 QS2 sing 496 n n 
C41 H45 QS2 sing 497 n n 
C42 H46 QS2 sing 498 n n 
C42 H47 QS2 sing 499 n n 
C42 H48 QS2 sing 500 n n 
C43 H49 QS2 sing 501 n n 
C43 H50 QS2 sing 502 n n 
C43 H51 QS2 sing 503 n n 
C6 H52 QS2 sing 504 n n 
C7 H53 QS2 sing 505 n n 
C8 H54 QS2 sing 506 n n 
#
_atom_sites.entry_id                     6ZXA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 3 BCL A 1 101 1699 BCL BCL . 
P 4 QS2 A 1 102 1700 QS2 OK7 . 
Q 3 BCL B 1 101 1538 BCL BCL . 
R 3 BCL B 1 102 1600 BCL BCL . 
S 4 QS2 B 1 103 1700 QS2 OK7 . 
T 5 QSE C 1 101 1036 QSE OKE . 
U 3 BCL C 1 102 1699 BCL BCL . 
V 3 BCL D 1 101 1538 BCL BCL . 
W 3 BCL D 1 102 1600 BCL BCL . 
X 5 QSE E 1 101 1036 QSE OKE . 
Y 3 BCL E 1 102 1699 BCL BCL . 
Z 4 QS2 E 1 103 1700 QS2 OK7 . 
AA 5 QSE F 1 101 1036 QSE OKE . 
BA 3 BCL F 1 102 1538 BCL BCL . 
CA 3 BCL F 1 103 1600 BCL BCL . 
DA 3 BCL G 1 101 1699 BCL BCL . 
EA 4 QS2 G 1 102 1700 QS2 OK7 . 
FA 5 QSE H 1 101 1036 QSE OKE . 
GA 3 BCL H 1 102 1538 BCL BCL . 
HA 3 BCL H 1 103 1600 BCL BCL . 
IA 3 BCL I 1 101 1699 BCL BCL . 
JA 4 QS2 I 1 102 1700 QS2 OK7 . 
KA 5 QSE J 1 101 1036 QSE OKE . 
LA 3 BCL J 1 102 1538 BCL BCL . 
MA 3 BCL J 1 103 1600 BCL BCL . 
NA 3 BCL K 1 101 1699 BCL BCL . 
OA 4 QS2 K 1 102 1701 QS2 OK7 . 
PA 3 BCL L 1 101 1538 BCL BCL . 
QA 3 BCL L 1 102 1600 BCL BCL . 
RA 5 QSE M 1 101 1036 QSE OKE . 
SA 3 BCL M 1 102 1699 BCL BCL . 
TA 4 QS2 M 1 103 1700 QS2 OK7 . 
UA 5 QSE N 1 101 1036 QSE OKE . 
VA 3 BCL N 1 102 1538 BCL BCL . 
WA 3 BCL N 1 103 1600 BCL BCL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 QS2 . . . EA 4 175.071 181.792 156.149 1 54.32 ? C1 QS2 102 G 1 
HETATM 2 C C10 QS2 . . . EA 4 182.701 186.31 159.879 1 30.33 ? C10 QS2 102 G 1 
HETATM 3 C C11 QS2 . . . EA 4 183.843 186.766 160.573 1 30.48 ? C11 QS2 102 G 1 
HETATM 4 C C12 QS2 . . . EA 4 185.064 186.281 160.35 1 31.97 ? C12 QS2 102 G 1 
HETATM 5 C C13 QS2 . . . EA 4 186.287 186.676 161.016 1 34.58 ? C13 QS2 102 G 1 
HETATM 6 C C14 QS2 . . . EA 4 187.438 186.029 160.719 1 34.39 ? C14 QS2 102 G 1 
HETATM 7 C C15 QS2 . . . EA 4 188.719 186.222 161.308 1 34.39 ? C15 QS2 102 G 1 
HETATM 8 C C16 QS2 . . . EA 4 189.81 185.512 160.964 1 35.77 ? C16 QS2 102 G 1 
HETATM 9 C C17 QS2 . . . EA 4 191.087 185.693 161.574 1 40.23 ? C17 QS2 102 G 1 
HETATM 10 C C18 QS2 . . . EA 4 192.23 185.013 161.319 1 46.52 ? C18 QS2 102 G 1 
HETATM 11 C C19 QS2 . . . EA 4 193.397 185.268 162.141 1 55.43 ? C19 QS2 102 G 1 
HETATM 12 C C2 QS2 . . . EA 4 174.48 182.851 157.082 1 63.27 ? C2 QS2 102 G 1 
HETATM 13 C C20 QS2 . . . EA 4 194.552 184.597 162.143 1 61.22 ? C20 QS2 102 G 1 
HETATM 14 C C21 QS2 . . . EA 4 195.624 184.928 163.024 1 68.89 ? C21 QS2 102 G 1 
HETATM 15 C C22 QS2 . . . EA 4 196.824 184.314 163.144 1 81.1 ? C22 QS2 102 G 1 
HETATM 16 C C23 QS2 . . . EA 4 175.998 180.847 156.893 1 54.01 ? C23 QS2 102 G 1 
HETATM 17 C C24 QS2 . . . EA 4 173.988 181.019 155.423 1 50.38 ? C24 QS2 102 G 1 
HETATM 18 C C26 QS2 . . . EA 4 175.989 186.486 158.786 1 26.03 ? C26 QS2 102 G 1 
HETATM 19 C C27 QS2 . . . EA 4 181.003 187.8 160.979 1 27.37 ? C27 QS2 102 G 1 
HETATM 20 C C28 QS2 . . . EA 4 186.203 187.762 162.05 1 27.88 ? C28 QS2 102 G 1 
HETATM 21 C C29 QS2 . . . EA 4 192.324 183.938 160.274 1 40.97 ? C29 QS2 102 G 1 
HETATM 22 C C3 QS2 . . . EA 4 175.049 184.273 156.998 1 39.17 ? C3 QS2 102 G 1 
HETATM 23 C C30 QS2 . . . EA 4 197.129 183.164 162.313 1 94.21 ? C30 QS2 102 G 1 
HETATM 24 C C31 QS2 . . . EA 4 176.745 181.8 154.432 1 39.45 ? C31 QS2 102 G 1 
HETATM 25 C C33 QS2 . . . EA 4 198.198 182.417 162.568 1 109.93 ? C33 QS2 102 G 1 
HETATM 26 C C34 QS2 . . . EA 4 197.867 184.762 164.129 1 89.65 ? C34 QS2 102 G 1 
HETATM 27 C C35 QS2 . . . EA 4 198.853 181.442 161.687 1 130.27 ? C35 QS2 102 G 1 
HETATM 28 C C36 QS2 . . . EA 4 198.665 181.502 160.305 1 128.42 ? C36 QS2 102 G 1 
HETATM 29 C C37 QS2 . . . EA 4 199.377 180.678 159.459 1 130.83 ? C37 QS2 102 G 1 
HETATM 30 C C38 QS2 . . . EA 4 200.297 179.761 159.951 1 145.32 ? C38 QS2 102 G 1 
HETATM 31 C C39 QS2 . . . EA 4 200.487 179.661 161.338 1 139.29 ? C39 QS2 102 G 1 
HETATM 32 C C4 QS2 . . . EA 4 176.504 184.405 157.352 1 39.31 ? C4 QS2 102 G 1 
HETATM 33 C C40 QS2 . . . EA 4 199.763 180.488 162.212 1 135.55 ? C40 QS2 102 G 1 
HETATM 34 C C41 QS2 . . . EA 4 201.081 178.9 158.994 1 157.83 ? C41 QS2 102 G 1 
HETATM 35 C C42 QS2 . . . EA 4 201.494 178.679 161.882 1 144.12 ? C42 QS2 102 G 1 
HETATM 36 C C43 QS2 . . . EA 4 199.939 180.345 163.704 1 134.38 ? C43 QS2 102 G 1 
HETATM 37 C C5 QS2 . . . EA 4 176.981 185.508 158.231 1 32.49 ? C5 QS2 102 G 1 
HETATM 38 C C6 QS2 . . . EA 4 178.275 185.495 158.443 1 24.7 ? C6 QS2 102 G 1 
HETATM 39 C C7 QS2 . . . EA 4 179.086 186.297 159.247 1 24.74 ? C7 QS2 102 G 1 
HETATM 40 C C8 QS2 . . . EA 4 180.394 186.053 159.261 1 26.05 ? C8 QS2 102 G 1 
HETATM 41 C C9 QS2 . . . EA 4 181.421 186.72 160.025 1 25.98 ? C9 QS2 102 G 1 
HETATM 42 O O25 QS2 . . . EA 4 175.771 182.517 155.186 1 44.73 ? O25 QS2 102 G 1 
HETATM 43 O O32 QS2 . . . EA 4 177.333 183.621 156.928 1 61.72 ? O32 QS2 102 G 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           400 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#