data_6ZXA # _model_server_result.job_id 8bh4rCO493l_46LLYaGyzw _model_server_result.datetime_utc '2024-11-15 17:52:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"TA","auth_seq_id":103}' # _entry.id 6ZXA # _exptl.entry_id 6ZXA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 578.866 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-cis-okenone _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZXA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 P N N ? 4 S N N ? 4 Z N N ? 4 EA N N ? 4 JA N N ? 4 OA N N ? 4 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 21 A ASP 21 1_555 O MG BCL . A BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc2 C OD2 ASP 21 C ASP 21 1_555 U MG BCL . C BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc3 E OD2 ASP 21 E ASP 21 1_555 Y MG BCL . E BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc4 G OD2 ASP 21 G ASP 21 1_555 DA MG BCL . G BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc5 I OD2 ASP 21 I ASP 21 1_555 IA MG BCL . I BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc6 K OD2 ASP 21 K ASP 21 1_555 NA MG BCL . K BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc7 M OD2 ASP 21 M ASP 21 1_555 SA MG BCL . M BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? # _chem_comp.formula 'C41 H54 O2' _chem_comp.formula_weight 578.866 _chem_comp.id QS2 _chem_comp.mon_nstd_flag . _chem_comp.name 9-cis-okenone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 O25 QS2 sing 410 n n O25 C1 QS2 sing 411 n n C24 C1 QS2 sing 412 n n C1 C23 QS2 sing 413 n n C1 C2 QS2 sing 414 n n O32 C4 QS2 doub 415 n n C3 C2 QS2 sing 416 n n C3 C4 QS2 sing 417 n n C4 C5 QS2 sing 418 n n C5 C6 QS2 doub 419 e n C5 C26 QS2 sing 420 n n C6 C7 QS2 sing 421 n n C41 C38 QS2 sing 422 n n C7 C8 QS2 doub 423 e n C8 C9 QS2 sing 424 n n C37 C38 QS2 doub 425 n y C37 C36 QS2 sing 426 n y C10 C9 QS2 doub 427 e n C10 C11 QS2 sing 428 n n C38 C39 QS2 sing 429 n y C9 C27 QS2 sing 430 n n C29 C18 QS2 sing 431 n n C36 C35 QS2 doub 432 n y C12 C11 QS2 doub 433 e n C12 C13 QS2 sing 434 n n C14 C13 QS2 doub 435 e n C14 C15 QS2 sing 436 n n C16 C15 QS2 doub 437 e n C16 C17 QS2 sing 438 n n C13 C28 QS2 sing 439 n n C18 C17 QS2 doub 440 e n C18 C19 QS2 sing 441 n n C39 C42 QS2 sing 442 n n C39 C40 QS2 doub 443 n y C35 C40 QS2 sing 444 n y C35 C33 QS2 sing 445 n n C19 C20 QS2 doub 446 e n C20 C21 QS2 sing 447 n n C40 C43 QS2 sing 448 n n C30 C33 QS2 doub 449 e n C30 C22 QS2 sing 450 n n C21 C22 QS2 doub 451 z n C22 C34 QS2 sing 452 n n C10 H1 QS2 sing 453 n n C11 H2 QS2 sing 454 n n C12 H3 QS2 sing 455 n n C14 H4 QS2 sing 456 n n C15 H5 QS2 sing 457 n n C16 H6 QS2 sing 458 n n C17 H7 QS2 sing 459 n n C19 H8 QS2 sing 460 n n C2 H9 QS2 sing 461 n n C2 H10 QS2 sing 462 n n C20 H11 QS2 sing 463 n n C21 H12 QS2 sing 464 n n C23 H13 QS2 sing 465 n n C23 H14 QS2 sing 466 n n C23 H15 QS2 sing 467 n n C24 H16 QS2 sing 468 n n C24 H17 QS2 sing 469 n n C24 H18 QS2 sing 470 n n C26 H19 QS2 sing 471 n n C26 H20 QS2 sing 472 n n C26 H21 QS2 sing 473 n n C27 H22 QS2 sing 474 n n C27 H23 QS2 sing 475 n n C27 H24 QS2 sing 476 n n C28 H25 QS2 sing 477 n n C28 H26 QS2 sing 478 n n C28 H27 QS2 sing 479 n n C29 H28 QS2 sing 480 n n C29 H29 QS2 sing 481 n n C29 H30 QS2 sing 482 n n C3 H31 QS2 sing 483 n n C3 H32 QS2 sing 484 n n C30 H33 QS2 sing 485 n n C31 H34 QS2 sing 486 n n C31 H35 QS2 sing 487 n n C31 H36 QS2 sing 488 n n C33 H37 QS2 sing 489 n n C34 H38 QS2 sing 490 n n C34 H39 QS2 sing 491 n n C34 H40 QS2 sing 492 n n C36 H41 QS2 sing 493 n n C37 H42 QS2 sing 494 n n C41 H43 QS2 sing 495 n n C41 H44 QS2 sing 496 n n C41 H45 QS2 sing 497 n n C42 H46 QS2 sing 498 n n C42 H47 QS2 sing 499 n n C42 H48 QS2 sing 500 n n C43 H49 QS2 sing 501 n n C43 H50 QS2 sing 502 n n C43 H51 QS2 sing 503 n n C6 H52 QS2 sing 504 n n C7 H53 QS2 sing 505 n n C8 H54 QS2 sing 506 n n # _atom_sites.entry_id 6ZXA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 3 BCL A 1 101 1699 BCL BCL . P 4 QS2 A 1 102 1700 QS2 OK7 . Q 3 BCL B 1 101 1538 BCL BCL . R 3 BCL B 1 102 1600 BCL BCL . S 4 QS2 B 1 103 1700 QS2 OK7 . T 5 QSE C 1 101 1036 QSE OKE . U 3 BCL C 1 102 1699 BCL BCL . V 3 BCL D 1 101 1538 BCL BCL . W 3 BCL D 1 102 1600 BCL BCL . X 5 QSE E 1 101 1036 QSE OKE . Y 3 BCL E 1 102 1699 BCL BCL . Z 4 QS2 E 1 103 1700 QS2 OK7 . AA 5 QSE F 1 101 1036 QSE OKE . BA 3 BCL F 1 102 1538 BCL BCL . CA 3 BCL F 1 103 1600 BCL BCL . DA 3 BCL G 1 101 1699 BCL BCL . EA 4 QS2 G 1 102 1700 QS2 OK7 . FA 5 QSE H 1 101 1036 QSE OKE . GA 3 BCL H 1 102 1538 BCL BCL . HA 3 BCL H 1 103 1600 BCL BCL . IA 3 BCL I 1 101 1699 BCL BCL . JA 4 QS2 I 1 102 1700 QS2 OK7 . KA 5 QSE J 1 101 1036 QSE OKE . LA 3 BCL J 1 102 1538 BCL BCL . MA 3 BCL J 1 103 1600 BCL BCL . NA 3 BCL K 1 101 1699 BCL BCL . OA 4 QS2 K 1 102 1701 QS2 OK7 . PA 3 BCL L 1 101 1538 BCL BCL . QA 3 BCL L 1 102 1600 BCL BCL . RA 5 QSE M 1 101 1036 QSE OKE . SA 3 BCL M 1 102 1699 BCL BCL . TA 4 QS2 M 1 103 1700 QS2 OK7 . UA 5 QSE N 1 101 1036 QSE OKE . VA 3 BCL N 1 102 1538 BCL BCL . WA 3 BCL N 1 103 1600 BCL BCL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QS2 . . . TA 4 149.52 154.795 156.158 1 54.16 ? C1 QS2 103 M 1 HETATM 2 C C10 QS2 . . . TA 4 140.687 154.036 159.892 1 29.98 ? C10 QS2 103 M 1 HETATM 3 C C11 QS2 . . . TA 4 139.461 154.121 160.587 1 30.27 ? C11 QS2 103 M 1 HETATM 4 C C12 QS2 . . . TA 4 138.571 155.088 160.365 1 31.67 ? C12 QS2 103 M 1 HETATM 5 C C13 QS2 . . . TA 4 137.299 155.263 161.032 1 33.93 ? C13 QS2 103 M 1 HETATM 6 C C14 QS2 . . . TA 4 136.543 156.346 160.736 1 34.06 ? C14 QS2 103 M 1 HETATM 7 C C15 QS2 . . . TA 4 135.306 156.728 161.327 1 33.9 ? C15 QS2 103 M 1 HETATM 8 C C16 QS2 . . . TA 4 134.631 157.842 160.984 1 35.22 ? C16 QS2 103 M 1 HETATM 9 C C17 QS2 . . . TA 4 133.402 158.232 161.594 1 39.08 ? C17 QS2 103 M 1 HETATM 10 C C18 QS2 . . . TA 4 132.668 159.342 161.34 1 44.72 ? C18 QS2 103 M 1 HETATM 11 C C19 QS2 . . . TA 4 131.507 159.619 162.163 1 52.89 ? C19 QS2 103 M 1 HETATM 12 C C2 QS2 . . . TA 4 149.592 153.583 157.09 1 65.36 ? C2 QS2 103 M 1 HETATM 13 C C20 QS2 . . . TA 4 130.757 160.725 162.167 1 59.06 ? C20 QS2 103 M 1 HETATM 14 C C21 QS2 . . . TA 4 129.649 160.891 163.048 1 66.76 ? C21 QS2 103 M 1 HETATM 15 C C22 QS2 . . . TA 4 128.834 161.965 163.17 1 76.72 ? C22 QS2 103 M 1 HETATM 16 C C23 QS2 . . . TA 4 149.096 156.047 156.902 1 52.29 ? C23 QS2 103 M 1 HETATM 17 C C24 QS2 . . . TA 4 150.831 155.02 155.431 1 49.81 ? C24 QS2 103 M 1 HETATM 18 C C26 QS2 . . . TA 4 146.656 150.964 158.794 1 25.78 ? C26 QS2 103 M 1 HETATM 19 C C27 QS2 . . . TA 4 141.57 151.955 160.991 1 26.93 ? C27 QS2 103 M 1 HETATM 20 C C28 QS2 . . . TA 4 136.903 154.248 162.066 1 27.09 ? C28 QS2 103 M 1 HETATM 21 C C29 QS2 . . . TA 4 133.049 160.352 160.297 1 39.91 ? C29 QS2 103 M 1 HETATM 22 C C3 QS2 . . . TA 4 148.463 152.55 157.006 1 39.88 ? C3 QS2 103 M 1 HETATM 23 C C30 QS2 . . . TA 4 129.058 163.134 162.339 1 88.03 ? C30 QS2 103 M 1 HETATM 24 C C31 QS2 . . . TA 4 148.007 155.515 154.442 1 37.04 ? C31 QS2 103 M 1 HETATM 25 C C33 QS2 . . . TA 4 128.42 164.272 162.595 1 103.1 ? C33 QS2 103 M 1 HETATM 26 C C34 QS2 . . . TA 4 127.701 162.014 164.155 1 85.5 ? C34 QS2 103 M 1 HETATM 27 C C35 QS2 . . . TA 4 128.253 165.435 161.715 1 124.87 ? C35 QS2 103 M 1 HETATM 28 C C36 QS2 . . . TA 4 128.396 165.299 160.333 1 121.67 ? C36 QS2 103 M 1 HETATM 29 C C37 QS2 . . . TA 4 128.111 166.352 159.488 1 127.07 ? C37 QS2 103 M 1 HETATM 30 C C38 QS2 . . . TA 4 127.681 167.577 159.981 1 144.03 ? C38 QS2 103 M 1 HETATM 31 C C39 QS2 . . . TA 4 127.555 167.749 161.367 1 137.17 ? C39 QS2 103 M 1 HETATM 32 C C4 QS2 . . . TA 4 147.095 153.062 157.362 1 38.25 ? C4 QS2 103 M 1 HETATM 33 C C40 QS2 . . . TA 4 127.848 166.688 162.241 1 131.67 ? C40 QS2 103 M 1 HETATM 34 C C41 QS2 . . . TA 4 127.348 168.693 159.025 1 158.25 ? C41 QS2 103 M 1 HETATM 35 C C42 QS2 . . . TA 4 127.075 169.071 161.913 1 145.72 ? C42 QS2 103 M 1 HETATM 36 C C43 QS2 . . . TA 4 127.752 166.893 163.733 1 129.04 ? C43 QS2 103 M 1 HETATM 37 C C5 QS2 . . . TA 4 146.187 152.275 158.24 1 32.28 ? C5 QS2 103 M 1 HETATM 38 C C6 QS2 . . . TA 4 145.027 152.849 158.453 1 24.63 ? C6 QS2 103 M 1 HETATM 39 C C7 QS2 . . . TA 4 143.949 152.478 159.258 1 23.97 ? C7 QS2 103 M 1 HETATM 40 C C8 QS2 . . . TA 4 142.876 153.266 159.273 1 25.42 ? C8 QS2 103 M 1 HETATM 41 C C9 QS2 . . . TA 4 141.662 153.111 160.037 1 25.2 ? C9 QS2 103 M 1 HETATM 42 O O25 QS2 . . . TA 4 148.574 154.445 155.195 1 43.8 ? O25 QS2 103 M 1 HETATM 43 O O32 QS2 . . . TA 4 146.689 154.129 156.938 1 60.82 ? O32 QS2 103 M 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 43 #