data_6ZXB
#
_model_server_result.job_id            OaGQc1LdIsaH4Eu21uSBJw 
_model_server_result.datetime_utc      '2024-11-15 03:57:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zxb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":306}' 
#
_entry.id    6ZXB 
#
_exptl.entry_id    6ZXB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.77 
_cell.angle_gamma         90 
_cell.entry_id            6ZXB 
_cell.length_a            136.676 
_cell.length_b            39.344 
_cell.length_c            146.222 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZXB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 7 A GLU 12 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc2 A OD1 ASP 8 A ASP 13 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc3 A OD2 ASP 51 A ASP 56 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc4 A OD2 ASP 169 A ASP 174 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc5 A OD1 ASP 169 A ASP 174 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc6 A O ILE 170 A ILE 175 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc7 A OE2 GLU 212 A GLU 217 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc8 A OE1 GLU 212 A GLU 217 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc9 A OE2 GLU 212 A GLU 217 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc10 A OE2 GLU 213 A GLU 218 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc11 C O2G GH3 . A GH3 301 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? 
metalc ? metalc12 C O2B GH3 . A GH3 301 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc13 E MG MG . A MG 303 1_555 R O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc14 E MG MG . A MG 303 1_555 R O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc15 B OE2 GLU 7 B GLU 12 1_555 M MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc16 B OD1 ASP 8 B ASP 13 1_555 M MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc17 B OD2 ASP 51 B ASP 56 1_555 M MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc18 B OD2 ASP 169 B ASP 174 1_555 N MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc19 B OD1 ASP 169 B ASP 174 1_555 O MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc20 B O ILE 170 B ILE 175 1_555 O MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc21 B OE2 GLU 212 B GLU 217 1_555 N MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc22 B OE1 GLU 212 B GLU 217 1_555 O MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc23 B OE1 GLU 213 B GLU 218 1_555 N MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc24 L O1A GH3 . B GH3 301 1_555 N MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? 
metalc ? metalc25 L O2G GH3 . B GH3 301 1_555 O MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc26 L O2B GH3 . B GH3 301 1_555 O MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6ZXB 
_atom_sites.fract_transf_matrix[1][1]    0.007317 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002487 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025417 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007223 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GH3 A 1 301 301 GH3 GH3 . 
D 3 MG A 1 302 401 MG MG . 
E 3 MG A 1 303 402 MG MG . 
F 3 MG A 1 304 403 MG MG . 
G 4 SO4 A 1 305 501 SO4 SO4 . 
H 4 SO4 A 1 306 502 SO4 SO4 . 
I 4 SO4 A 1 307 503 SO4 SO4 . 
J 4 SO4 A 1 308 504 SO4 SO4 . 
K 5 EDO A 1 309 601 EDO EDO . 
L 2 GH3 B 1 301 301 GH3 GH3 . 
M 3 MG B 1 302 401 MG MG . 
N 3 MG B 1 303 402 MG MG . 
O 3 MG B 1 304 403 MG MG . 
P 4 SO4 B 1 305 501 SO4 SO4 . 
Q 5 EDO B 1 306 601 EDO EDO . 
R 6 HOH A 1 401 33 HOH HOH . 
R 6 HOH A 2 402 36 HOH HOH . 
R 6 HOH A 3 403 30 HOH HOH . 
R 6 HOH A 4 404 6 HOH HOH . 
R 6 HOH A 5 405 15 HOH HOH . 
R 6 HOH A 6 406 5 HOH HOH . 
R 6 HOH A 7 407 40 HOH HOH . 
R 6 HOH A 8 408 44 HOH HOH . 
R 6 HOH A 9 409 35 HOH HOH . 
R 6 HOH A 10 410 45 HOH HOH . 
R 6 HOH A 11 411 39 HOH HOH . 
R 6 HOH A 12 412 10 HOH HOH . 
R 6 HOH A 13 413 59 HOH HOH . 
R 6 HOH A 14 414 3 HOH HOH . 
R 6 HOH A 15 415 13 HOH HOH . 
R 6 HOH A 16 416 47 HOH HOH . 
R 6 HOH A 17 417 31 HOH HOH . 
R 6 HOH A 18 418 38 HOH HOH . 
R 6 HOH A 19 419 23 HOH HOH . 
R 6 HOH A 20 420 42 HOH HOH . 
R 6 HOH A 21 421 41 HOH HOH . 
R 6 HOH A 22 422 37 HOH HOH . 
R 6 HOH A 23 423 32 HOH HOH . 
R 6 HOH A 24 424 8 HOH HOH . 
R 6 HOH A 25 425 43 HOH HOH . 
R 6 HOH A 26 426 18 HOH HOH . 
R 6 HOH A 27 427 46 HOH HOH . 
R 6 HOH A 28 428 34 HOH HOH . 
S 6 HOH B 1 401 14 HOH HOH . 
S 6 HOH B 2 402 17 HOH HOH . 
S 6 HOH B 3 403 50 HOH HOH . 
S 6 HOH B 4 404 52 HOH HOH . 
S 6 HOH B 5 405 1 HOH HOH . 
S 6 HOH B 6 406 58 HOH HOH . 
S 6 HOH B 7 407 55 HOH HOH . 
S 6 HOH B 8 408 48 HOH HOH . 
S 6 HOH B 9 409 2 HOH HOH . 
S 6 HOH B 10 410 9 HOH HOH . 
S 6 HOH B 11 411 16 HOH HOH . 
S 6 HOH B 12 412 20 HOH HOH . 
S 6 HOH B 13 413 7 HOH HOH . 
S 6 HOH B 14 414 51 HOH HOH . 
S 6 HOH B 15 415 56 HOH HOH . 
S 6 HOH B 16 416 53 HOH HOH . 
S 6 HOH B 17 417 57 HOH HOH . 
S 6 HOH B 18 418 54 HOH HOH . 
S 6 HOH B 19 419 60 HOH HOH . 
S 6 HOH B 20 420 61 HOH HOH . 
S 6 HOH B 21 421 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . Q 5 -7.046 19.508 55.325 1 64.1 ? C1 EDO 306 B 1 
HETATM 2 O O1 EDO . . . Q 5 -5.783 20.114 55.579 1 61.06 ? O1 EDO 306 B 1 
HETATM 3 C C2 EDO . . . Q 5 -7.908 20.291 54.393 1 58.55 ? C2 EDO 306 B 1 
HETATM 4 O O2 EDO . . . Q 5 -8.122 19.683 53.128 1 55.31 ? O2 EDO 306 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           45 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
#