data_6ZY3
#
_model_server_result.job_id            uzVYYQQPLdFuL38UQ6VP_A 
_model_server_result.datetime_utc      '2025-03-06 09:29:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zy3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    6ZY3 
#
_exptl.entry_id    6ZY3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZY3 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZY3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 PEE sing 235 n n 
C5 C4 PEE sing 236 n n 
C4 O4P PEE sing 237 n n 
O4P P PEE sing 238 n n 
O1P P PEE doub 239 n n 
C1 O3P PEE sing 240 n n 
C1 C2 PEE sing 241 n n 
O3P P PEE sing 242 n n 
P O2P PEE sing 243 n n 
C2 C3 PEE sing 244 n n 
C2 O2 PEE sing 245 n n 
C3 O3 PEE sing 246 n n 
O2 C10 PEE sing 247 n n 
C31 C30 PEE sing 248 n n 
C31 C32 PEE sing 249 n n 
C33 C32 PEE sing 250 n n 
C33 C34 PEE sing 251 n n 
C30 O3 PEE sing 252 n n 
C30 O5 PEE doub 253 n n 
C10 O4 PEE doub 254 n n 
C10 C11 PEE sing 255 n n 
C34 C35 PEE sing 256 n n 
C11 C12 PEE sing 257 n n 
C35 C36 PEE sing 258 n n 
C36 C37 PEE sing 259 n n 
C37 C38 PEE sing 260 n n 
C38 C39 PEE doub 261 z n 
C12 C13 PEE sing 262 n n 
C39 C40 PEE sing 263 n n 
C13 C14 PEE sing 264 n n 
C14 C15 PEE sing 265 n n 
C40 C41 PEE sing 266 n n 
C15 C16 PEE sing 267 n n 
C41 C42 PEE sing 268 n n 
C16 C17 PEE sing 269 n n 
C42 C43 PEE sing 270 n n 
C17 C18 PEE sing 271 n n 
C43 C44 PEE sing 272 n n 
C18 C19 PEE doub 273 z n 
C46 C47 PEE sing 274 n n 
C46 C45 PEE sing 275 n n 
C44 C45 PEE sing 276 n n 
C19 C20 PEE sing 277 n n 
C20 C21 PEE sing 278 n n 
C21 C22 PEE sing 279 n n 
C22 C23 PEE sing 280 n n 
C23 C24 PEE sing 281 n n 
C24 C25 PEE sing 282 n n 
C26 C25 PEE sing 283 n n 
C26 C27 PEE sing 284 n n 
C27 H7 PEE sing 285 n n 
C27 H8 PEE sing 286 n n 
C27 H82 PEE sing 287 n n 
C26 H5 PEE sing 288 n n 
C26 H6 PEE sing 289 n n 
C25 H12 PEE sing 290 n n 
C25 H4 PEE sing 291 n n 
C24 H10 PEE sing 292 n n 
C24 H11 PEE sing 293 n n 
C23 H83 PEE sing 294 n n 
C23 H9 PEE sing 295 n n 
C22 H2 PEE sing 296 n n 
C22 H3 PEE sing 297 n n 
C21 H14 PEE sing 298 n n 
C21 H1 PEE sing 299 n n 
C20 H16 PEE sing 300 n n 
C20 H13 PEE sing 301 n n 
C19 H18 PEE sing 302 n n 
C18 H20 PEE sing 303 n n 
C17 H22 PEE sing 304 n n 
C17 H19 PEE sing 305 n n 
C16 H21 PEE sing 306 n n 
C16 H28 PEE sing 307 n n 
C15 H23 PEE sing 308 n n 
C15 H24 PEE sing 309 n n 
C14 H25 PEE sing 310 n n 
C14 H26 PEE sing 311 n n 
C13 H17 PEE sing 312 n n 
C13 H27 PEE sing 313 n n 
C12 H15 PEE sing 314 n n 
C12 H29 PEE sing 315 n n 
C11 H30 PEE sing 316 n n 
C11 H31 PEE sing 317 n n 
C2 H32 PEE sing 318 n n 
C1 H33 PEE sing 319 n n 
C1 H34 PEE sing 320 n n 
O2P H35 PEE sing 321 n n 
C4 H36 PEE sing 322 n n 
C4 H37 PEE sing 323 n n 
C5 H38 PEE sing 324 n n 
C5 H39 PEE sing 325 n n 
N H40 PEE sing 326 n n 
N H41 PEE sing 327 n n 
C3 H43 PEE sing 328 n n 
C3 H44 PEE sing 329 n n 
C31 H45 PEE sing 330 n n 
C31 H46 PEE sing 331 n n 
C32 H47 PEE sing 332 n n 
C32 H48 PEE sing 333 n n 
C33 H49 PEE sing 334 n n 
C33 H50 PEE sing 335 n n 
C34 H51 PEE sing 336 n n 
C34 H52 PEE sing 337 n n 
C35 H53 PEE sing 338 n n 
C35 H54 PEE sing 339 n n 
C36 H55 PEE sing 340 n n 
C36 H56 PEE sing 341 n n 
C37 H57 PEE sing 342 n n 
C37 H58 PEE sing 343 n n 
C38 H59 PEE sing 344 n n 
C39 H60 PEE sing 345 n n 
C40 H81 PEE sing 346 n n 
C40 H61 PEE sing 347 n n 
C41 H80 PEE sing 348 n n 
C41 H62 PEE sing 349 n n 
C42 H63 PEE sing 350 n n 
C42 H64 PEE sing 351 n n 
C43 H65 PEE sing 352 n n 
C43 H66 PEE sing 353 n n 
C44 H67 PEE sing 354 n n 
C44 H68 PEE sing 355 n n 
C45 H69 PEE sing 356 n n 
C45 H70 PEE sing 357 n n 
C46 H71 PEE sing 358 n n 
C46 H72 PEE sing 359 n n 
C47 H73 PEE sing 360 n n 
C47 H74 PEE sing 361 n n 
C47 H75 PEE sing 362 n n 
#
_atom_sites.entry_id                     6ZY3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          M 
_pdbx_nonpoly_scheme.entity_id        5 
_pdbx_nonpoly_scheme.mon_id           PEE 
_pdbx_nonpoly_scheme.pdb_strand_id    H 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      301 
_pdbx_nonpoly_scheme.auth_seq_num     301 
_pdbx_nonpoly_scheme.pdb_mon_id       PEE 
_pdbx_nonpoly_scheme.auth_mon_id      9TL 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 PEE . . . M 5 132.348 133.493 106.783 1 37.08 ? C27 PEE 301 H 1 
HETATM 2 C C26 PEE . . . M 5 131.524 134.194 107.841 1 37.08 ? C26 PEE 301 H 1 
HETATM 3 C C25 PEE . . . M 5 131.287 133.284 109.041 1 37.08 ? C25 PEE 301 H 1 
HETATM 4 C C24 PEE . . . M 5 130.442 133.984 110.098 1 37.08 ? C24 PEE 301 H 1 
HETATM 5 C C23 PEE . . . M 5 131.149 135.226 110.627 1 37.08 ? C23 PEE 301 H 1 
HETATM 6 C C22 PEE . . . M 5 130.32 135.924 111.699 1 37.08 ? C22 PEE 301 H 1 
HETATM 7 C C21 PEE . . . M 5 130.028 134.986 112.864 1 37.08 ? C21 PEE 301 H 1 
HETATM 8 C C20 PEE . . . M 5 129.593 135.768 114.097 1 37.08 ? C20 PEE 301 H 1 
HETATM 9 C C19 PEE . . . M 5 129.404 134.841 115.29 1 37.08 ? C19 PEE 301 H 1 
HETATM 10 C C18 PEE . . . M 5 129.621 135.602 116.592 1 37.08 ? C18 PEE 301 H 1 
HETATM 11 C C17 PEE . . . M 5 128.328 136.253 117.064 1 37.08 ? C17 PEE 301 H 1 
HETATM 12 C C16 PEE . . . M 5 127.358 135.192 117.567 1 37.08 ? C16 PEE 301 H 1 
HETATM 13 C C15 PEE . . . M 5 127.949 134.439 118.754 1 37.08 ? C15 PEE 301 H 1 
HETATM 14 C C14 PEE . . . M 5 126.99 133.378 119.277 1 37.08 ? C14 PEE 301 H 1 
HETATM 15 C C13 PEE . . . M 5 127.563 132.692 120.512 1 37.08 ? C13 PEE 301 H 1 
HETATM 16 C C12 PEE . . . M 5 128.776 131.838 120.163 1 37.08 ? C12 PEE 301 H 1 
HETATM 17 C C11 PEE . . . M 5 129.305 131.125 121.402 1 37.08 ? C11 PEE 301 H 1 
HETATM 18 C C10 PEE . . . M 5 129.685 129.708 121.043 1 37.08 ? C10 PEE 301 H 1 
HETATM 19 O O4 PEE . . . M 5 129.747 129.356 119.877 1 37.08 ? O4 PEE 301 H 1 
HETATM 20 O O2 PEE . . . M 5 129.982 128.745 122.091 1 37.08 ? O2 PEE 301 H 1 
HETATM 21 C C2 PEE . . . M 5 131.31 128.865 122.597 1 37.08 ? C2 PEE 301 H 1 
HETATM 22 C C1 PEE . . . M 5 131.256 128.775 124.116 1 37.08 ? C1 PEE 301 H 1 
HETATM 23 O O3P PEE . . . M 5 132.54 128.426 124.629 1 37.08 ? O3P PEE 301 H 1 
HETATM 24 P P PEE . . . M 5 132.677 127.869 126.132 1 37.08 ? P PEE 301 H 1 
HETATM 25 O O2P PEE . . . M 5 134.136 127.658 126.457 1 37.08 ? O2P PEE 301 H 1 
HETATM 26 O O1P PEE . . . M 5 131.918 126.569 126.248 1 37.08 ? O1P PEE 301 H 1 
HETATM 27 O O4P PEE . . . M 5 132.047 128.937 127.159 1 37.08 ? O4P PEE 301 H 1 
HETATM 28 C C4 PEE . . . M 5 131.975 128.646 128.552 1 37.08 ? C4 PEE 301 H 1 
HETATM 29 C C5 PEE . . . M 5 131.263 129.785 129.272 1 37.08 ? C5 PEE 301 H 1 
HETATM 30 N N PEE . . . M 5 129.905 129.94 128.725 1 37.08 ? N PEE 301 H 1 
HETATM 31 C C3 PEE . . . M 5 132.173 127.724 122.071 1 37.08 ? C3 PEE 301 H 1 
HETATM 32 O O3 PEE . . . M 5 131.79 127.379 120.742 1 37.08 ? O3 PEE 301 H 1 
HETATM 33 C C30 PEE . . . M 5 130.972 126.201 120.497 1 37.08 ? C30 PEE 301 H 1 
HETATM 34 O O5 PEE . . . M 5 130.015 125.971 121.218 1 37.08 ? O5 PEE 301 H 1 
HETATM 35 C C31 PEE . . . M 5 131.295 125.285 119.345 1 37.08 ? C31 PEE 301 H 1 
HETATM 36 C C32 PEE . . . M 5 130.38 125.633 118.179 1 37.08 ? C32 PEE 301 H 1 
HETATM 37 C C33 PEE . . . M 5 130.527 124.616 117.056 1 37.08 ? C33 PEE 301 H 1 
HETATM 38 C C34 PEE . . . M 5 129.85 125.104 115.783 1 37.08 ? C34 PEE 301 H 1 
HETATM 39 C C35 PEE . . . M 5 129.82 123.983 114.754 1 37.08 ? C35 PEE 301 H 1 
HETATM 40 C C36 PEE . . . M 5 129.494 124.5 113.359 1 37.08 ? C36 PEE 301 H 1 
HETATM 41 C C37 PEE . . . M 5 128.135 125.18 113.28 1 37.08 ? C37 PEE 301 H 1 
HETATM 42 C C38 PEE . . . M 5 127.746 125.319 111.814 1 37.08 ? C38 PEE 301 H 1 
HETATM 43 C C39 PEE . . . M 5 127.067 126.65 111.519 1 37.08 ? C39 PEE 301 H 1 
HETATM 44 C C40 PEE . . . M 5 127.4 127.119 110.107 1 37.08 ? C40 PEE 301 H 1 
HETATM 45 C C41 PEE . . . M 5 126.905 126.137 109.05 1 37.08 ? C41 PEE 301 H 1 
HETATM 46 C C42 PEE . . . M 5 128.042 125.696 108.133 1 37.08 ? C42 PEE 301 H 1 
HETATM 47 C C43 PEE . . . M 5 127.507 125.12 106.827 1 37.08 ? C43 PEE 301 H 1 
HETATM 48 C C44 PEE . . . M 5 127.748 126.065 105.653 1 37.08 ? C44 PEE 301 H 1 
HETATM 49 C C45 PEE . . . M 5 126.573 127.011 105.418 1 37.08 ? C45 PEE 301 H 1 
HETATM 50 C C46 PEE . . . M 5 126.853 128.415 105.946 1 37.08 ? C46 PEE 301 H 1 
HETATM 51 C C47 PEE . . . M 5 128.072 129.022 105.285 1 37.08 ? C47 PEE 301 H 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           51 
#