data_6ZYH # _model_server_result.job_id 6NvhjLp8xi0DDFEk_R4rTw _model_server_result.datetime_utc '2024-11-28 21:07:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6ZYH # _exptl.entry_id 6ZYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 78.07 _cell.angle_beta 86.72 _cell.angle_gamma 62.28 _cell.entry_id 6ZYH _cell.length_a 48.359 _cell.length_b 51.862 _cell.length_c 93.082 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O HIS 225 A HIS 252 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A OD1 ASP 230 A ASP 257 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc3 A OD2 ASP 230 A ASP 257 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc4 A O GLY 288 A GLY 315 1_555 H CA CA . B CA 503 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc5 C O1B ADP . A ADP 501 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc6 C O1A ADP . A ADP 501 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc7 D CA CA . A CA 502 1_555 I O HOH . A HOH 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc8 D CA CA . A CA 502 1_555 I O HOH . A HOH 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc9 D CA CA . A CA 502 1_555 B O GLY 288 B GLY 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc10 D CA CA . A CA 502 1_555 J O HOH . B HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc11 D CA CA . A CA 502 1_555 J O HOH . B HOH 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc12 E CA CA . A CA 503 1_555 I O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc13 E CA CA . A CA 503 1_555 I O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc14 E CA CA . A CA 503 1_555 I O HOH . A HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc15 E CA CA . A CA 503 1_555 I O HOH . A HOH 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc16 E CA CA . A CA 503 1_555 I O HOH . A HOH 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc17 I O HOH . A HOH 604 1_655 H CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc18 I O HOH . A HOH 672 1_655 H CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc19 B O HIS 225 B HIS 252 1_555 H CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc20 B OD1 ASP 230 B ASP 257 1_555 H CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc21 B OD2 ASP 230 B ASP 257 1_555 H CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc22 F O2B ADP . B ADP 501 1_555 G CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc23 F O2A ADP . B ADP 501 1_555 G CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc24 G CA CA . B CA 502 1_555 J O HOH . B HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc25 G CA CA . B CA 502 1_555 J O HOH . B HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc26 G CA CA . B CA 502 1_555 J O HOH . B HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc27 G CA CA . B CA 502 1_555 J O HOH . B HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc28 G CA CA . B CA 502 1_555 J O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc29 H CA CA . B CA 503 1_555 J O HOH . B HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc30 H CA CA . B CA 503 1_555 J O HOH . B HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZYH _atom_sites.fract_transf_matrix[1][1] 0.020679 _atom_sites.fract_transf_matrix[1][2] -0.010867 _atom_sites.fract_transf_matrix[1][3] 0.001053 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021782 _atom_sites.fract_transf_matrix[2][3] -0.004534 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 501 501 ADP ADP . D 3 CA A 1 502 2 CA CA . E 3 CA A 1 503 3 CA CA . F 2 ADP B 1 501 501 ADP ADP . G 3 CA B 1 502 1 CA CA . H 3 CA B 1 503 4 CA CA . I 4 HOH A 1 601 80 HOH HOH . I 4 HOH A 2 602 128 HOH HOH . I 4 HOH A 3 603 120 HOH HOH . I 4 HOH A 4 604 96 HOH HOH . I 4 HOH A 5 605 101 HOH HOH . I 4 HOH A 6 606 89 HOH HOH . I 4 HOH A 7 607 169 HOH HOH . I 4 HOH A 8 608 158 HOH HOH . I 4 HOH A 9 609 15 HOH HOH . I 4 HOH A 10 610 65 HOH HOH . I 4 HOH A 11 611 174 HOH HOH . I 4 HOH A 12 612 166 HOH HOH . I 4 HOH A 13 613 167 HOH HOH . I 4 HOH A 14 614 106 HOH HOH . I 4 HOH A 15 615 41 HOH HOH . I 4 HOH A 16 616 3 HOH HOH . I 4 HOH A 17 617 2 HOH HOH . I 4 HOH A 18 618 26 HOH HOH . I 4 HOH A 19 619 149 HOH HOH . I 4 HOH A 20 620 17 HOH HOH . I 4 HOH A 21 621 146 HOH HOH . I 4 HOH A 22 622 71 HOH HOH . I 4 HOH A 23 623 28 HOH HOH . I 4 HOH A 24 624 157 HOH HOH . I 4 HOH A 25 625 39 HOH HOH . I 4 HOH A 26 626 29 HOH HOH . I 4 HOH A 27 627 178 HOH HOH . I 4 HOH A 28 628 135 HOH HOH . I 4 HOH A 29 629 170 HOH HOH . I 4 HOH A 30 630 160 HOH HOH . I 4 HOH A 31 631 22 HOH HOH . I 4 HOH A 32 632 37 HOH HOH . I 4 HOH A 33 633 129 HOH HOH . I 4 HOH A 34 634 83 HOH HOH . I 4 HOH A 35 635 203 HOH HOH . I 4 HOH A 36 636 168 HOH HOH . I 4 HOH A 37 637 11 HOH HOH . I 4 HOH A 38 638 12 HOH HOH . I 4 HOH A 39 639 136 HOH HOH . I 4 HOH A 40 640 113 HOH HOH . I 4 HOH A 41 641 94 HOH HOH . I 4 HOH A 42 642 59 HOH HOH . I 4 HOH A 43 643 161 HOH HOH . I 4 HOH A 44 644 152 HOH HOH . I 4 HOH A 45 645 21 HOH HOH . I 4 HOH A 46 646 84 HOH HOH . I 4 HOH A 47 647 4 HOH HOH . I 4 HOH A 48 648 74 HOH HOH . I 4 HOH A 49 649 86 HOH HOH . I 4 HOH A 50 650 38 HOH HOH . I 4 HOH A 51 651 50 HOH HOH . I 4 HOH A 52 652 55 HOH HOH . I 4 HOH A 53 653 176 HOH HOH . I 4 HOH A 54 654 102 HOH HOH . I 4 HOH A 55 655 64 HOH HOH . I 4 HOH A 56 656 31 HOH HOH . I 4 HOH A 57 657 142 HOH HOH . I 4 HOH A 58 658 33 HOH HOH . I 4 HOH A 59 659 24 HOH HOH . I 4 HOH A 60 660 35 HOH HOH . I 4 HOH A 61 661 103 HOH HOH . I 4 HOH A 62 662 171 HOH HOH . I 4 HOH A 63 663 137 HOH HOH . I 4 HOH A 64 664 173 HOH HOH . I 4 HOH A 65 665 116 HOH HOH . I 4 HOH A 66 666 70 HOH HOH . I 4 HOH A 67 667 72 HOH HOH . I 4 HOH A 68 668 177 HOH HOH . I 4 HOH A 69 669 122 HOH HOH . I 4 HOH A 70 670 164 HOH HOH . I 4 HOH A 71 671 202 HOH HOH . I 4 HOH A 72 672 56 HOH HOH . I 4 HOH A 73 673 207 HOH HOH . I 4 HOH A 74 674 75 HOH HOH . I 4 HOH A 75 675 93 HOH HOH . I 4 HOH A 76 676 126 HOH HOH . I 4 HOH A 77 677 159 HOH HOH . I 4 HOH A 78 678 172 HOH HOH . I 4 HOH A 79 679 46 HOH HOH . I 4 HOH A 80 680 6 HOH HOH . I 4 HOH A 81 681 48 HOH HOH . I 4 HOH A 82 682 40 HOH HOH . I 4 HOH A 83 683 88 HOH HOH . I 4 HOH A 84 684 44 HOH HOH . I 4 HOH A 85 685 79 HOH HOH . I 4 HOH A 86 686 175 HOH HOH . I 4 HOH A 87 687 104 HOH HOH . I 4 HOH A 88 688 150 HOH HOH . I 4 HOH A 89 689 52 HOH HOH . I 4 HOH A 90 690 121 HOH HOH . I 4 HOH A 91 691 63 HOH HOH . I 4 HOH A 92 692 95 HOH HOH . I 4 HOH A 93 693 163 HOH HOH . I 4 HOH A 94 694 115 HOH HOH . I 4 HOH A 95 695 118 HOH HOH . I 4 HOH A 96 696 124 HOH HOH . I 4 HOH A 97 697 165 HOH HOH . I 4 HOH A 98 698 8 HOH HOH . I 4 HOH A 99 699 188 HOH HOH . I 4 HOH A 100 700 125 HOH HOH . I 4 HOH A 101 701 98 HOH HOH . I 4 HOH A 102 702 123 HOH HOH . I 4 HOH A 103 703 114 HOH HOH . I 4 HOH A 104 704 162 HOH HOH . J 4 HOH B 1 601 217 HOH HOH . J 4 HOH B 2 602 141 HOH HOH . J 4 HOH B 3 603 215 HOH HOH . J 4 HOH B 4 604 97 HOH HOH . J 4 HOH B 5 605 78 HOH HOH . J 4 HOH B 6 606 60 HOH HOH . J 4 HOH B 7 607 51 HOH HOH . J 4 HOH B 8 608 211 HOH HOH . J 4 HOH B 9 609 68 HOH HOH . J 4 HOH B 10 610 139 HOH HOH . J 4 HOH B 11 611 87 HOH HOH . J 4 HOH B 12 612 206 HOH HOH . J 4 HOH B 13 613 54 HOH HOH . J 4 HOH B 14 614 213 HOH HOH . J 4 HOH B 15 615 90 HOH HOH . J 4 HOH B 16 616 196 HOH HOH . J 4 HOH B 17 617 185 HOH HOH . J 4 HOH B 18 618 77 HOH HOH . J 4 HOH B 19 619 138 HOH HOH . J 4 HOH B 20 620 193 HOH HOH . J 4 HOH B 21 621 209 HOH HOH . J 4 HOH B 22 622 201 HOH HOH . J 4 HOH B 23 623 111 HOH HOH . J 4 HOH B 24 624 99 HOH HOH . J 4 HOH B 25 625 32 HOH HOH . J 4 HOH B 26 626 107 HOH HOH . J 4 HOH B 27 627 200 HOH HOH . J 4 HOH B 28 628 42 HOH HOH . J 4 HOH B 29 629 156 HOH HOH . J 4 HOH B 30 630 85 HOH HOH . J 4 HOH B 31 631 140 HOH HOH . J 4 HOH B 32 632 69 HOH HOH . J 4 HOH B 33 633 1 HOH HOH . J 4 HOH B 34 634 218 HOH HOH . J 4 HOH B 35 635 105 HOH HOH . J 4 HOH B 36 636 13 HOH HOH . J 4 HOH B 37 637 9 HOH HOH . J 4 HOH B 38 638 189 HOH HOH . J 4 HOH B 39 639 151 HOH HOH . J 4 HOH B 40 640 14 HOH HOH . J 4 HOH B 41 641 18 HOH HOH . J 4 HOH B 42 642 132 HOH HOH . J 4 HOH B 43 643 47 HOH HOH . J 4 HOH B 44 644 19 HOH HOH . J 4 HOH B 45 645 66 HOH HOH . J 4 HOH B 46 646 34 HOH HOH . J 4 HOH B 47 647 131 HOH HOH . J 4 HOH B 48 648 73 HOH HOH . J 4 HOH B 49 649 82 HOH HOH . J 4 HOH B 50 650 25 HOH HOH . J 4 HOH B 51 651 108 HOH HOH . J 4 HOH B 52 652 192 HOH HOH . J 4 HOH B 53 653 92 HOH HOH . J 4 HOH B 54 654 36 HOH HOH . J 4 HOH B 55 655 7 HOH HOH . J 4 HOH B 56 656 212 HOH HOH . J 4 HOH B 57 657 30 HOH HOH . J 4 HOH B 58 658 181 HOH HOH . J 4 HOH B 59 659 16 HOH HOH . J 4 HOH B 60 660 81 HOH HOH . J 4 HOH B 61 661 187 HOH HOH . J 4 HOH B 62 662 110 HOH HOH . J 4 HOH B 63 663 58 HOH HOH . J 4 HOH B 64 664 10 HOH HOH . J 4 HOH B 65 665 194 HOH HOH . J 4 HOH B 66 666 180 HOH HOH . J 4 HOH B 67 667 91 HOH HOH . J 4 HOH B 68 668 109 HOH HOH . J 4 HOH B 69 669 57 HOH HOH . J 4 HOH B 70 670 119 HOH HOH . J 4 HOH B 71 671 143 HOH HOH . J 4 HOH B 72 672 154 HOH HOH . J 4 HOH B 73 673 184 HOH HOH . J 4 HOH B 74 674 199 HOH HOH . J 4 HOH B 75 675 198 HOH HOH . J 4 HOH B 76 676 216 HOH HOH . J 4 HOH B 77 677 182 HOH HOH . J 4 HOH B 78 678 49 HOH HOH . J 4 HOH B 79 679 20 HOH HOH . J 4 HOH B 80 680 144 HOH HOH . J 4 HOH B 81 681 191 HOH HOH . J 4 HOH B 82 682 183 HOH HOH . J 4 HOH B 83 683 27 HOH HOH . J 4 HOH B 84 684 186 HOH HOH . J 4 HOH B 85 685 190 HOH HOH . J 4 HOH B 86 686 43 HOH HOH . J 4 HOH B 87 687 23 HOH HOH . J 4 HOH B 88 688 148 HOH HOH . J 4 HOH B 89 689 53 HOH HOH . J 4 HOH B 90 690 67 HOH HOH . J 4 HOH B 91 691 145 HOH HOH . J 4 HOH B 92 692 76 HOH HOH . J 4 HOH B 93 693 130 HOH HOH . J 4 HOH B 94 694 100 HOH HOH . J 4 HOH B 95 695 61 HOH HOH . J 4 HOH B 96 696 153 HOH HOH . J 4 HOH B 97 697 208 HOH HOH . J 4 HOH B 98 698 210 HOH HOH . J 4 HOH B 99 699 205 HOH HOH . J 4 HOH B 100 700 45 HOH HOH . J 4 HOH B 101 701 147 HOH HOH . J 4 HOH B 102 702 62 HOH HOH . J 4 HOH B 103 703 112 HOH HOH . J 4 HOH B 104 704 127 HOH HOH . J 4 HOH B 105 705 214 HOH HOH . J 4 HOH B 106 706 5 HOH HOH . J 4 HOH B 107 707 134 HOH HOH . J 4 HOH B 108 708 204 HOH HOH . J 4 HOH B 109 709 179 HOH HOH . J 4 HOH B 110 710 117 HOH HOH . J 4 HOH B 111 711 155 HOH HOH . J 4 HOH B 112 712 195 HOH HOH . J 4 HOH B 113 713 197 HOH HOH . J 4 HOH B 114 714 133 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.236 _atom_site.Cartn_y -17.582 _atom_site.Cartn_z 15.759 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #