data_6ZYZ
#
_model_server_result.job_id            '_UJ0Fli4yBw31oNx5iuM6g' 
_model_server_result.datetime_utc      '2025-09-01 07:48:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zyz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    6ZYZ 
#
_exptl.entry_id    6ZYZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              368.463 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ZYZ 
_cell.length_a            196.841 
_cell.length_b            196.841 
_cell.length_c            65.267 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZYZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    'P 65' 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 I N N 
#
_chem_comp.formula           'C17 H36 O8' 
_chem_comp.formula_weight    368.463 
_chem_comp.id                PXN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAF CAA PXN sing 352 n n 
CAA HAA PXN sing 353 n n 
CAA HAAA PXN sing 354 n n 
CAA HAAB PXN sing 355 n n 
CAI CAB PXN sing 356 n n 
CAB HAB PXN sing 357 n n 
CAB HABA PXN sing 358 n n 
CAB HABB PXN sing 359 n n 
CAM CAC PXN sing 360 n n 
OAD CAC PXN sing 361 n n 
CAC HAC PXN sing 362 n n 
CAC HACA PXN sing 363 n n 
OAD CAE PXN sing 364 n n 
CAE CAF PXN sing 365 n n 
CAE HAE PXN sing 366 n n 
CAE HAEA PXN sing 367 n n 
CAF OAG PXN sing 368 n n 
CAF HAF PXN sing 369 n n 
OAG HOAG PXN sing 370 n n 
OAH CAI PXN sing 371 n n 
OAH HOAH PXN sing 372 n n 
CAI CAJ PXN sing 373 n n 
CAI HAI PXN sing 374 n n 
CAJ OAK PXN sing 375 n n 
CAJ HAJ PXN sing 376 n n 
CAJ HAJA PXN sing 377 n n 
OAK CAL PXN sing 378 n n 
CAL CAM PXN sing 379 n n 
CAL HAL PXN sing 380 n n 
CAL HALA PXN sing 381 n n 
CAM CAW PXN sing 382 n n 
CAM CAN PXN sing 383 n n 
OAO CAN PXN sing 384 n n 
CAN HAN PXN sing 385 n n 
CAN HANA PXN sing 386 n n 
OAO CAP PXN sing 387 n n 
CAQ CAP PXN sing 388 n n 
CAP HAP PXN sing 389 n n 
CAP HAPA PXN sing 390 n n 
CAX CAQ PXN sing 391 n n 
CAQ OAR PXN sing 392 n n 
CAQ HAQ PXN sing 393 n n 
OAR HOAR PXN sing 394 n n 
OAS CAT PXN sing 395 n n 
OAS HOAS PXN sing 396 n n 
CAU CAT PXN sing 397 n n 
CAT CAY PXN sing 398 n n 
CAT HAT PXN sing 399 n n 
OAV CAU PXN sing 400 n n 
CAU HAU PXN sing 401 n n 
CAU HAUA PXN sing 402 n n 
OAV CAW PXN sing 403 n n 
CAW HAW PXN sing 404 n n 
CAW HAWA PXN sing 405 n n 
CAX HAX PXN sing 406 n n 
CAX HAXA PXN sing 407 n n 
CAX HAXB PXN sing 408 n n 
CAY HAY PXN sing 409 n n 
CAY HAYA PXN sing 410 n n 
CAY HAYB PXN sing 411 n n 
#
_atom_sites.entry_id                     6ZYZ 
_atom_sites.fract_transf_matrix[1][1]    0.00508 
_atom_sites.fract_transf_matrix[1][2]    0.002933 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005866 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015322 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PXN A 1 301 380 PXN PXN . 
F 3 NAD A 1 302 480 NAD NAD . 
G 3 NAD B 1 301 280 NAD NAD . 
H 3 NAD C 1 301 480 NAD NAD . 
I 2 PXN D 1 301 380 PXN PXN . 
J 3 NAD D 1 302 280 NAD NAD . 
K 4 CL D 1 303 1 CL CL . 
L 5 HOH A 1 401 165 HOH HOH . 
L 5 HOH A 2 402 74 HOH HOH . 
L 5 HOH A 3 403 130 HOH HOH . 
L 5 HOH A 4 404 152 HOH HOH . 
L 5 HOH A 5 405 10 HOH HOH . 
L 5 HOH A 6 406 37 HOH HOH . 
L 5 HOH A 7 407 38 HOH HOH . 
L 5 HOH A 8 408 71 HOH HOH . 
L 5 HOH A 9 409 4 HOH HOH . 
L 5 HOH A 10 410 173 HOH HOH . 
L 5 HOH A 11 411 191 HOH HOH . 
L 5 HOH A 12 412 70 HOH HOH . 
L 5 HOH A 13 413 102 HOH HOH . 
L 5 HOH A 14 414 59 HOH HOH . 
L 5 HOH A 15 415 39 HOH HOH . 
L 5 HOH A 16 416 40 HOH HOH . 
L 5 HOH A 17 417 177 HOH HOH . 
L 5 HOH A 18 418 69 HOH HOH . 
L 5 HOH A 19 419 8 HOH HOH . 
L 5 HOH A 20 420 22 HOH HOH . 
L 5 HOH A 21 421 44 HOH HOH . 
L 5 HOH A 22 422 85 HOH HOH . 
L 5 HOH A 23 423 82 HOH HOH . 
L 5 HOH A 24 424 61 HOH HOH . 
L 5 HOH A 25 425 96 HOH HOH . 
L 5 HOH A 26 426 55 HOH HOH . 
L 5 HOH A 27 427 15 HOH HOH . 
L 5 HOH A 28 428 47 HOH HOH . 
L 5 HOH A 29 429 33 HOH HOH . 
L 5 HOH A 30 430 31 HOH HOH . 
L 5 HOH A 31 431 14 HOH HOH . 
L 5 HOH A 32 432 100 HOH HOH . 
L 5 HOH A 33 433 62 HOH HOH . 
L 5 HOH A 34 434 116 HOH HOH . 
L 5 HOH A 35 435 68 HOH HOH . 
L 5 HOH A 36 436 75 HOH HOH . 
L 5 HOH A 37 437 144 HOH HOH . 
L 5 HOH A 38 438 129 HOH HOH . 
L 5 HOH A 39 439 2 HOH HOH . 
L 5 HOH A 40 440 120 HOH HOH . 
L 5 HOH A 41 441 73 HOH HOH . 
L 5 HOH A 42 442 153 HOH HOH . 
L 5 HOH A 43 443 35 HOH HOH . 
L 5 HOH A 44 444 88 HOH HOH . 
L 5 HOH A 45 445 58 HOH HOH . 
L 5 HOH A 46 446 108 HOH HOH . 
L 5 HOH A 47 447 110 HOH HOH . 
L 5 HOH A 48 448 80 HOH HOH . 
L 5 HOH A 49 449 132 HOH HOH . 
L 5 HOH A 50 450 78 HOH HOH . 
L 5 HOH A 51 451 115 HOH HOH . 
L 5 HOH A 52 452 147 HOH HOH . 
L 5 HOH A 53 453 166 HOH HOH . 
L 5 HOH A 54 454 86 HOH HOH . 
L 5 HOH A 55 455 98 HOH HOH . 
L 5 HOH A 56 456 104 HOH HOH . 
L 5 HOH A 57 457 30 HOH HOH . 
L 5 HOH A 58 458 184 HOH HOH . 
L 5 HOH A 59 459 135 HOH HOH . 
L 5 HOH A 60 460 146 HOH HOH . 
L 5 HOH A 61 461 186 HOH HOH . 
L 5 HOH A 62 462 140 HOH HOH . 
L 5 HOH A 63 463 162 HOH HOH . 
L 5 HOH A 64 464 134 HOH HOH . 
L 5 HOH A 65 465 180 HOH HOH . 
L 5 HOH A 66 466 50 HOH HOH . 
L 5 HOH A 67 467 196 HOH HOH . 
L 5 HOH A 68 468 138 HOH HOH . 
L 5 HOH A 69 469 195 HOH HOH . 
L 5 HOH A 70 470 89 HOH HOH . 
M 5 HOH B 1 401 171 HOH HOH . 
M 5 HOH B 2 402 139 HOH HOH . 
M 5 HOH B 3 403 18 HOH HOH . 
M 5 HOH B 4 404 52 HOH HOH . 
M 5 HOH B 5 405 34 HOH HOH . 
M 5 HOH B 6 406 124 HOH HOH . 
M 5 HOH B 7 407 125 HOH HOH . 
M 5 HOH B 8 408 76 HOH HOH . 
M 5 HOH B 9 409 121 HOH HOH . 
M 5 HOH B 10 410 41 HOH HOH . 
M 5 HOH B 11 411 12 HOH HOH . 
M 5 HOH B 12 412 6 HOH HOH . 
M 5 HOH B 13 413 156 HOH HOH . 
M 5 HOH B 14 414 23 HOH HOH . 
M 5 HOH B 15 415 87 HOH HOH . 
M 5 HOH B 16 416 154 HOH HOH . 
M 5 HOH B 17 417 51 HOH HOH . 
M 5 HOH B 18 418 99 HOH HOH . 
M 5 HOH B 19 419 3 HOH HOH . 
M 5 HOH B 20 420 105 HOH HOH . 
M 5 HOH B 21 421 42 HOH HOH . 
M 5 HOH B 22 422 72 HOH HOH . 
M 5 HOH B 23 423 114 HOH HOH . 
M 5 HOH B 24 424 157 HOH HOH . 
M 5 HOH B 25 425 159 HOH HOH . 
M 5 HOH B 26 426 45 HOH HOH . 
M 5 HOH B 27 427 17 HOH HOH . 
M 5 HOH B 28 428 141 HOH HOH . 
M 5 HOH B 29 429 28 HOH HOH . 
M 5 HOH B 30 430 7 HOH HOH . 
M 5 HOH B 31 431 92 HOH HOH . 
M 5 HOH B 32 432 83 HOH HOH . 
M 5 HOH B 33 433 56 HOH HOH . 
M 5 HOH B 34 434 53 HOH HOH . 
M 5 HOH B 35 435 128 HOH HOH . 
M 5 HOH B 36 436 107 HOH HOH . 
M 5 HOH B 37 437 13 HOH HOH . 
M 5 HOH B 38 438 106 HOH HOH . 
M 5 HOH B 39 439 32 HOH HOH . 
M 5 HOH B 40 440 111 HOH HOH . 
M 5 HOH B 41 441 91 HOH HOH . 
M 5 HOH B 42 442 103 HOH HOH . 
M 5 HOH B 43 443 117 HOH HOH . 
M 5 HOH B 44 444 67 HOH HOH . 
M 5 HOH B 45 445 93 HOH HOH . 
M 5 HOH B 46 446 84 HOH HOH . 
M 5 HOH B 47 447 54 HOH HOH . 
M 5 HOH B 48 448 149 HOH HOH . 
M 5 HOH B 49 449 160 HOH HOH . 
M 5 HOH B 50 450 90 HOH HOH . 
M 5 HOH B 51 451 137 HOH HOH . 
M 5 HOH B 52 452 170 HOH HOH . 
M 5 HOH B 53 453 197 HOH HOH . 
M 5 HOH B 54 454 182 HOH HOH . 
M 5 HOH B 55 455 183 HOH HOH . 
M 5 HOH B 56 456 168 HOH HOH . 
M 5 HOH B 57 457 64 HOH HOH . 
M 5 HOH B 58 458 112 HOH HOH . 
M 5 HOH B 59 459 145 HOH HOH . 
M 5 HOH B 60 460 95 HOH HOH . 
M 5 HOH B 61 461 192 HOH HOH . 
M 5 HOH B 62 462 181 HOH HOH . 
M 5 HOH B 63 463 193 HOH HOH . 
M 5 HOH B 64 464 133 HOH HOH . 
M 5 HOH B 65 465 169 HOH HOH . 
M 5 HOH B 66 466 158 HOH HOH . 
M 5 HOH B 67 467 150 HOH HOH . 
M 5 HOH B 68 468 187 HOH HOH . 
N 5 HOH C 1 401 174 HOH HOH . 
N 5 HOH C 2 402 46 HOH HOH . 
N 5 HOH C 3 403 79 HOH HOH . 
N 5 HOH C 4 404 143 HOH HOH . 
N 5 HOH C 5 405 21 HOH HOH . 
N 5 HOH C 6 406 1 HOH HOH . 
N 5 HOH C 7 407 63 HOH HOH . 
N 5 HOH C 8 408 60 HOH HOH . 
N 5 HOH C 9 409 136 HOH HOH . 
N 5 HOH C 10 410 126 HOH HOH . 
N 5 HOH C 11 411 185 HOH HOH . 
N 5 HOH C 12 412 16 HOH HOH . 
N 5 HOH C 13 413 164 HOH HOH . 
N 5 HOH C 14 414 20 HOH HOH . 
N 5 HOH C 15 415 101 HOH HOH . 
N 5 HOH C 16 416 48 HOH HOH . 
N 5 HOH C 17 417 11 HOH HOH . 
N 5 HOH C 18 418 123 HOH HOH . 
N 5 HOH C 19 419 9 HOH HOH . 
N 5 HOH C 20 420 175 HOH HOH . 
N 5 HOH C 21 421 77 HOH HOH . 
N 5 HOH C 22 422 94 HOH HOH . 
N 5 HOH C 23 423 24 HOH HOH . 
N 5 HOH C 24 424 109 HOH HOH . 
N 5 HOH C 25 425 43 HOH HOH . 
N 5 HOH C 26 426 113 HOH HOH . 
N 5 HOH C 27 427 172 HOH HOH . 
N 5 HOH C 28 428 148 HOH HOH . 
N 5 HOH C 29 429 178 HOH HOH . 
N 5 HOH C 30 430 198 HOH HOH . 
N 5 HOH C 31 431 179 HOH HOH . 
O 5 HOH D 1 401 190 HOH HOH . 
O 5 HOH D 2 402 57 HOH HOH . 
O 5 HOH D 3 403 26 HOH HOH . 
O 5 HOH D 4 404 131 HOH HOH . 
O 5 HOH D 5 405 65 HOH HOH . 
O 5 HOH D 6 406 188 HOH HOH . 
O 5 HOH D 7 407 66 HOH HOH . 
O 5 HOH D 8 408 29 HOH HOH . 
O 5 HOH D 9 409 25 HOH HOH . 
O 5 HOH D 10 410 81 HOH HOH . 
O 5 HOH D 11 411 118 HOH HOH . 
O 5 HOH D 12 412 27 HOH HOH . 
O 5 HOH D 13 413 19 HOH HOH . 
O 5 HOH D 14 414 194 HOH HOH . 
O 5 HOH D 15 415 5 HOH HOH . 
O 5 HOH D 16 416 167 HOH HOH . 
O 5 HOH D 17 417 127 HOH HOH . 
O 5 HOH D 18 418 151 HOH HOH . 
O 5 HOH D 19 419 142 HOH HOH . 
O 5 HOH D 20 420 161 HOH HOH . 
O 5 HOH D 21 421 49 HOH HOH . 
O 5 HOH D 22 422 97 HOH HOH . 
O 5 HOH D 23 423 119 HOH HOH . 
O 5 HOH D 24 424 189 HOH HOH . 
O 5 HOH D 25 425 36 HOH HOH . 
O 5 HOH D 26 426 176 HOH HOH . 
O 5 HOH D 27 427 163 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA PXN . . . I 2 44.535 73.372 27.093 1 72.23 ? CAA PXN 301 D 1 
HETATM 2 C CAB PXN . . . I 2 43.233 62.19 27.75 1 69.35 ? CAB PXN 301 D 1 
HETATM 3 C CAC PXN . . . I 2 44.981 68.822 27.441 1 78.85 ? CAC PXN 301 D 1 
HETATM 4 O OAD PXN . . . I 2 45.559 69.912 28.098 1 80.79 ? OAD PXN 301 D 1 
HETATM 5 C CAE PXN . . . I 2 45.593 71.1 27.351 1 82.45 ? CAE PXN 301 D 1 
HETATM 6 C CAF PXN . . . I 2 44.547 72.07 27.903 1 88.65 ? CAF PXN 301 D 1 
HETATM 7 O OAG PXN . . . I 2 43.286 71.447 27.882 1 86.36 ? OAG PXN 301 D 1 
HETATM 8 O OAH PXN . . . I 2 45.206 62.541 26.417 1 76.57 ? OAH PXN 301 D 1 
HETATM 9 C CAI PXN . . . I 2 44.09 63.193 26.969 1 83.74 ? CAI PXN 301 D 1 
HETATM 10 C CAJ PXN . . . I 2 44.545 64.318 27.908 1 81.05 ? CAJ PXN 301 D 1 
HETATM 11 O OAK PXN . . . I 2 45.546 65.125 27.331 1 87.14 ? OAK PXN 301 D 1 
HETATM 12 C CAL PXN . . . I 2 45.117 66.406 26.931 1 87.21 ? CAL PXN 301 D 1 
HETATM 13 C CAM PXN . . . I 2 45.846 67.57 27.63 1 84.84 ? CAM PXN 301 D 1 
HETATM 14 C CAN PXN . . . I 2 47.26 67.78 27.063 1 75.58 ? CAN PXN 301 D 1 
HETATM 15 O OAO PXN . . . I 2 47.277 68.734 26.031 1 99.65 ? OAO PXN 301 D 1 
HETATM 16 C CAP PXN . . . I 2 47.334 68.203 24.726 1 99.32 ? CAP PXN 301 D 1 
HETATM 17 C CAQ PXN . . . I 2 47.619 69.297 23.688 1 93.54 ? CAQ PXN 301 D 1 
HETATM 18 O OAR PXN . . . I 2 46.745 70.381 23.866 1 86.03 ? OAR PXN 301 D 1 
HETATM 19 O OAS PXN . . . I 2 45.097 65.724 31.753 1 72.68 ? OAS PXN 301 D 1 
HETATM 20 C CAT PXN . . . I 2 46.261 65.06 31.336 1 62.35 ? CAT PXN 301 D 1 
HETATM 21 C CAU PXN . . . I 2 47.222 66.056 30.691 1 63.82 ? CAU PXN 301 D 1 
HETATM 22 O OAV PXN . . . I 2 46.92 66.273 29.343 1 72.98 ? OAV PXN 301 D 1 
HETATM 23 C CAW PXN . . . I 2 45.991 67.301 29.127 1 77.67 ? CAW PXN 301 D 1 
HETATM 24 C CAX PXN . . . I 2 47.445 68.723 22.281 1 86.61 ? CAX PXN 301 D 1 
HETATM 25 C CAY PXN . . . I 2 46.935 64.431 32.56 1 57.43 ? CAY PXN 301 D 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           745 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#