data_6ZZ1 # _model_server_result.job_id JDjfWqshqGuAUX602aHXKQ _model_server_result.datetime_utc '2024-11-22 16:03:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6ZZ1 # _exptl.entry_id 6ZZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.269 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-(2-methoxyethoxymethyl)-1,3-dimethyl-purine-2,6-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZZ1 _cell.length_a 56.709 _cell.length_b 56.709 _cell.length_c 90.501 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 89 A CYS 86 1_555 C C7 QOK . A QOK 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? covale ? covale2 B SG CYS 89 B CYS 86 1_555 D C7 QOK . B QOK 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.741 ? # _chem_comp.formula 'C11 H16 N4 O4' _chem_comp.formula_weight 268.269 _chem_comp.id QOK _chem_comp.mon_nstd_flag . _chem_comp.name 7-(2-methoxyethoxymethyl)-1,3-dimethyl-purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 O18 QOK sing 277 n n O18 C17 QOK sing 278 n n C17 C16 QOK sing 279 n n C16 O13 QOK sing 280 n n O13 C8 QOK sing 281 n n C7 N6 QOK doub 282 n y C7 N3 QOK sing 283 n y N6 C2 QOK sing 284 n y C8 N3 QOK sing 285 n n N3 C1 QOK sing 286 n y C2 C1 QOK doub 287 n y C2 N5 QOK sing 288 n n C12 N5 QOK sing 289 n n C1 C4 QOK sing 290 n n N5 C11 QOK sing 291 n n C4 O10 QOK doub 292 n n C4 N9 QOK sing 293 n n C11 N9 QOK sing 294 n n C11 O15 QOK doub 295 n n N9 C14 QOK sing 296 n n C7 H1 QOK sing 297 n n C8 H27 QOK sing 298 n n C8 H28 QOK sing 299 n n C17 H37 QOK sing 300 n n C17 H38 QOK sing 301 n n C14 H33 QOK sing 302 n n C14 H32 QOK sing 303 n n C14 H34 QOK sing 304 n n C16 H35 QOK sing 305 n n C16 H36 QOK sing 306 n n C19 H40 QOK sing 307 n n C19 H39 QOK sing 308 n n C19 H41 QOK sing 309 n n C12 H30 QOK sing 310 n n C12 H29 QOK sing 311 n n C12 H31 QOK sing 312 n n # _atom_sites.entry_id 6ZZ1 _atom_sites.fract_transf_matrix[1][1] 0.017634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QOK A 1 201 198 QOK LIG . D 2 QOK B 1 201 198 QOK LIG . E 3 HOH A 1 301 37 HOH HOH . E 3 HOH A 2 302 104 HOH HOH . E 3 HOH A 3 303 151 HOH HOH . E 3 HOH A 4 304 80 HOH HOH . E 3 HOH A 5 305 166 HOH HOH . E 3 HOH A 6 306 149 HOH HOH . E 3 HOH A 7 307 20 HOH HOH . E 3 HOH A 8 308 124 HOH HOH . E 3 HOH A 9 309 134 HOH HOH . E 3 HOH A 10 310 146 HOH HOH . E 3 HOH A 11 311 23 HOH HOH . E 3 HOH A 12 312 1 HOH HOH . E 3 HOH A 13 313 91 HOH HOH . E 3 HOH A 14 314 56 HOH HOH . E 3 HOH A 15 315 7 HOH HOH . E 3 HOH A 16 316 34 HOH HOH . E 3 HOH A 17 317 122 HOH HOH . E 3 HOH A 18 318 43 HOH HOH . E 3 HOH A 19 319 42 HOH HOH . E 3 HOH A 20 320 131 HOH HOH . E 3 HOH A 21 321 135 HOH HOH . E 3 HOH A 22 322 2 HOH HOH . E 3 HOH A 23 323 100 HOH HOH . E 3 HOH A 24 324 101 HOH HOH . E 3 HOH A 25 325 98 HOH HOH . E 3 HOH A 26 326 128 HOH HOH . E 3 HOH A 27 327 8 HOH HOH . E 3 HOH A 28 328 17 HOH HOH . E 3 HOH A 29 329 97 HOH HOH . E 3 HOH A 30 330 4 HOH HOH . E 3 HOH A 31 331 6 HOH HOH . E 3 HOH A 32 332 5 HOH HOH . E 3 HOH A 33 333 102 HOH HOH . E 3 HOH A 34 334 49 HOH HOH . E 3 HOH A 35 335 82 HOH HOH . E 3 HOH A 36 336 48 HOH HOH . E 3 HOH A 37 337 45 HOH HOH . E 3 HOH A 38 338 74 HOH HOH . E 3 HOH A 39 339 61 HOH HOH . E 3 HOH A 40 340 16 HOH HOH . E 3 HOH A 41 341 54 HOH HOH . E 3 HOH A 42 342 50 HOH HOH . E 3 HOH A 43 343 24 HOH HOH . E 3 HOH A 44 344 25 HOH HOH . E 3 HOH A 45 345 10 HOH HOH . E 3 HOH A 46 346 158 HOH HOH . E 3 HOH A 47 347 66 HOH HOH . E 3 HOH A 48 348 78 HOH HOH . E 3 HOH A 49 349 35 HOH HOH . E 3 HOH A 50 350 93 HOH HOH . E 3 HOH A 51 351 19 HOH HOH . E 3 HOH A 52 352 52 HOH HOH . E 3 HOH A 53 353 32 HOH HOH . E 3 HOH A 54 354 168 HOH HOH . E 3 HOH A 55 355 13 HOH HOH . E 3 HOH A 56 356 159 HOH HOH . E 3 HOH A 57 357 142 HOH HOH . E 3 HOH A 58 358 141 HOH HOH . E 3 HOH A 59 359 9 HOH HOH . E 3 HOH A 60 360 22 HOH HOH . E 3 HOH A 61 361 73 HOH HOH . E 3 HOH A 62 362 15 HOH HOH . E 3 HOH A 63 363 89 HOH HOH . E 3 HOH A 64 364 172 HOH HOH . E 3 HOH A 65 365 119 HOH HOH . E 3 HOH A 66 366 27 HOH HOH . E 3 HOH A 67 367 147 HOH HOH . E 3 HOH A 68 368 120 HOH HOH . E 3 HOH A 69 369 139 HOH HOH . E 3 HOH A 70 370 90 HOH HOH . E 3 HOH A 71 371 113 HOH HOH . E 3 HOH A 72 372 118 HOH HOH . E 3 HOH A 73 373 69 HOH HOH . E 3 HOH A 74 374 161 HOH HOH . E 3 HOH A 75 375 173 HOH HOH . E 3 HOH A 76 376 153 HOH HOH . E 3 HOH A 77 377 170 HOH HOH . E 3 HOH A 78 378 154 HOH HOH . E 3 HOH A 79 379 14 HOH HOH . E 3 HOH A 80 380 163 HOH HOH . E 3 HOH A 81 381 106 HOH HOH . E 3 HOH A 82 382 88 HOH HOH . E 3 HOH A 83 383 174 HOH HOH . E 3 HOH A 84 384 123 HOH HOH . E 3 HOH A 85 385 103 HOH HOH . E 3 HOH A 86 386 162 HOH HOH . E 3 HOH A 87 387 126 HOH HOH . F 3 HOH B 1 301 144 HOH HOH . F 3 HOH B 2 302 111 HOH HOH . F 3 HOH B 3 303 31 HOH HOH . F 3 HOH B 4 304 75 HOH HOH . F 3 HOH B 5 305 18 HOH HOH . F 3 HOH B 6 306 83 HOH HOH . F 3 HOH B 7 307 12 HOH HOH . F 3 HOH B 8 308 169 HOH HOH . F 3 HOH B 9 309 30 HOH HOH . F 3 HOH B 10 310 33 HOH HOH . F 3 HOH B 11 311 65 HOH HOH . F 3 HOH B 12 312 40 HOH HOH . F 3 HOH B 13 313 138 HOH HOH . F 3 HOH B 14 314 55 HOH HOH . F 3 HOH B 15 315 29 HOH HOH . F 3 HOH B 16 316 57 HOH HOH . F 3 HOH B 17 317 62 HOH HOH . F 3 HOH B 18 318 21 HOH HOH . F 3 HOH B 19 319 105 HOH HOH . F 3 HOH B 20 320 143 HOH HOH . F 3 HOH B 21 321 115 HOH HOH . F 3 HOH B 22 322 11 HOH HOH . F 3 HOH B 23 323 92 HOH HOH . F 3 HOH B 24 324 26 HOH HOH . F 3 HOH B 25 325 117 HOH HOH . F 3 HOH B 26 326 84 HOH HOH . F 3 HOH B 27 327 145 HOH HOH . F 3 HOH B 28 328 125 HOH HOH . F 3 HOH B 29 329 51 HOH HOH . F 3 HOH B 30 330 127 HOH HOH . F 3 HOH B 31 331 133 HOH HOH . F 3 HOH B 32 332 85 HOH HOH . F 3 HOH B 33 333 99 HOH HOH . F 3 HOH B 34 334 63 HOH HOH . F 3 HOH B 35 335 41 HOH HOH . F 3 HOH B 36 336 171 HOH HOH . F 3 HOH B 37 337 67 HOH HOH . F 3 HOH B 38 338 148 HOH HOH . F 3 HOH B 39 339 156 HOH HOH . F 3 HOH B 40 340 155 HOH HOH . F 3 HOH B 41 341 157 HOH HOH . F 3 HOH B 42 342 175 HOH HOH . F 3 HOH B 43 343 76 HOH HOH . F 3 HOH B 44 344 59 HOH HOH . F 3 HOH B 45 345 3 HOH HOH . F 3 HOH B 46 346 95 HOH HOH . F 3 HOH B 47 347 53 HOH HOH . F 3 HOH B 48 348 109 HOH HOH . F 3 HOH B 49 349 60 HOH HOH . F 3 HOH B 50 350 39 HOH HOH . F 3 HOH B 51 351 81 HOH HOH . F 3 HOH B 52 352 130 HOH HOH . F 3 HOH B 53 353 68 HOH HOH . F 3 HOH B 54 354 121 HOH HOH . F 3 HOH B 55 355 64 HOH HOH . F 3 HOH B 56 356 137 HOH HOH . F 3 HOH B 57 357 108 HOH HOH . F 3 HOH B 58 358 36 HOH HOH . F 3 HOH B 59 359 71 HOH HOH . F 3 HOH B 60 360 70 HOH HOH . F 3 HOH B 61 361 140 HOH HOH . F 3 HOH B 62 362 114 HOH HOH . F 3 HOH B 63 363 96 HOH HOH . F 3 HOH B 64 364 164 HOH HOH . F 3 HOH B 65 365 165 HOH HOH . F 3 HOH B 66 366 167 HOH HOH . F 3 HOH B 67 367 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 QOK . . . D 2 21.926 -50.016 26.481 0.96 68.4 ? N3 QOK 201 B 1 HETATM 2 C C4 QOK . . . D 2 20.283 -49.752 24.518 0.96 67.07 ? C4 QOK 201 B 1 HETATM 3 C C7 QOK . . . D 2 21.824 -50.8 27.623 0.96 67.74 ? C7 QOK 201 B 1 HETATM 4 C C8 QOK . . . D 2 22.952 -49.058 26.089 0.96 70.53 ? C8 QOK 201 B 1 HETATM 5 C C17 QOK . . . D 2 25.277 -51.226 24.325 0.96 75.19 ? C17 QOK 201 B 1 HETATM 6 C C1 QOK . . . D 2 20.801 -50.315 25.729 0.96 67.62 ? C1 QOK 201 B 1 HETATM 7 N N9 QOK . . . D 2 19.027 -50.292 24.174 0.96 65.61 ? N9 QOK 201 B 1 HETATM 8 C C14 QOK . . . D 2 18.345 -49.71 23.016 0.96 61.27 ? C14 QOK 201 B 1 HETATM 9 O O10 QOK . . . D 2 20.816 -48.883 23.818 0.96 69.35 ? O10 QOK 201 B 1 HETATM 10 O O13 QOK . . . D 2 24.155 -49.675 25.725 0.96 70.04 ? O13 QOK 201 B 1 HETATM 11 C C16 QOK . . . D 2 24.139 -50.259 24.436 0.96 72.78 ? C16 QOK 201 B 1 HETATM 12 O O18 QOK . . . D 2 26.509 -50.534 24.272 0.96 78.05 ? O18 QOK 201 B 1 HETATM 13 C C19 QOK . . . D 2 27.629 -51.404 24.16 0.96 77.05 ? C19 QOK 201 B 1 HETATM 14 N N6 QOK . . . D 2 20.774 -51.592 27.61 0.96 66.62 ? N6 QOK 201 B 1 HETATM 15 C C2 QOK . . . D 2 20.138 -51.274 26.449 0.96 66.75 ? C2 QOK 201 B 1 HETATM 16 N N5 QOK . . . D 2 18.921 -51.769 26.045 0.96 66.12 ? N5 QOK 201 B 1 HETATM 17 C C11 QOK . . . D 2 18.337 -51.287 24.878 0.96 65.51 ? C11 QOK 201 B 1 HETATM 18 O O15 QOK . . . D 2 17.265 -51.715 24.487 0.96 69.67 ? O15 QOK 201 B 1 HETATM 19 C C12 QOK . . . D 2 18.181 -52.748 26.85 0.96 63.34 ? C12 QOK 201 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #