data_6ZZ1
#
_model_server_result.job_id            OkMj9UdTkrBwMvg4620VCg 
_model_server_result.datetime_utc      '2024-11-04 18:03:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zz1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    6ZZ1 
#
_exptl.entry_id    6ZZ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              268.269 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-(2-methoxyethoxymethyl)-1,3-dimethyl-purine-2,6-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZZ1 
_cell.length_a            56.709 
_cell.length_b            56.709 
_cell.length_c            90.501 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZZ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 89 A CYS 86 1_555 C C7 QOK . A QOK 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? 
covale ? covale2 B SG CYS 89 B CYS 86 1_555 D C7 QOK . B QOK 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.741 ? 
#
_chem_comp.formula           'C11 H16 N4 O4' 
_chem_comp.formula_weight    268.269 
_chem_comp.id                QOK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-(2-methoxyethoxymethyl)-1,3-dimethyl-purine-2,6-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 O18 QOK sing 277 n n 
O18 C17 QOK sing 278 n n 
C17 C16 QOK sing 279 n n 
C16 O13 QOK sing 280 n n 
O13 C8 QOK sing 281 n n 
C7 N6 QOK doub 282 n y 
C7 N3 QOK sing 283 n y 
N6 C2 QOK sing 284 n y 
C8 N3 QOK sing 285 n n 
N3 C1 QOK sing 286 n y 
C2 C1 QOK doub 287 n y 
C2 N5 QOK sing 288 n n 
C12 N5 QOK sing 289 n n 
C1 C4 QOK sing 290 n n 
N5 C11 QOK sing 291 n n 
C4 O10 QOK doub 292 n n 
C4 N9 QOK sing 293 n n 
C11 N9 QOK sing 294 n n 
C11 O15 QOK doub 295 n n 
N9 C14 QOK sing 296 n n 
C7 H1 QOK sing 297 n n 
C8 H27 QOK sing 298 n n 
C8 H28 QOK sing 299 n n 
C17 H37 QOK sing 300 n n 
C17 H38 QOK sing 301 n n 
C14 H33 QOK sing 302 n n 
C14 H32 QOK sing 303 n n 
C14 H34 QOK sing 304 n n 
C16 H35 QOK sing 305 n n 
C16 H36 QOK sing 306 n n 
C19 H40 QOK sing 307 n n 
C19 H39 QOK sing 308 n n 
C19 H41 QOK sing 309 n n 
C12 H30 QOK sing 310 n n 
C12 H29 QOK sing 311 n n 
C12 H31 QOK sing 312 n n 
#
_atom_sites.entry_id                     6ZZ1 
_atom_sites.fract_transf_matrix[1][1]    0.017634 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017634 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01105 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 QOK A 1 201 198 QOK LIG . 
D 2 QOK B 1 201 198 QOK LIG . 
E 3 HOH A 1 301 37 HOH HOH . 
E 3 HOH A 2 302 104 HOH HOH . 
E 3 HOH A 3 303 151 HOH HOH . 
E 3 HOH A 4 304 80 HOH HOH . 
E 3 HOH A 5 305 166 HOH HOH . 
E 3 HOH A 6 306 149 HOH HOH . 
E 3 HOH A 7 307 20 HOH HOH . 
E 3 HOH A 8 308 124 HOH HOH . 
E 3 HOH A 9 309 134 HOH HOH . 
E 3 HOH A 10 310 146 HOH HOH . 
E 3 HOH A 11 311 23 HOH HOH . 
E 3 HOH A 12 312 1 HOH HOH . 
E 3 HOH A 13 313 91 HOH HOH . 
E 3 HOH A 14 314 56 HOH HOH . 
E 3 HOH A 15 315 7 HOH HOH . 
E 3 HOH A 16 316 34 HOH HOH . 
E 3 HOH A 17 317 122 HOH HOH . 
E 3 HOH A 18 318 43 HOH HOH . 
E 3 HOH A 19 319 42 HOH HOH . 
E 3 HOH A 20 320 131 HOH HOH . 
E 3 HOH A 21 321 135 HOH HOH . 
E 3 HOH A 22 322 2 HOH HOH . 
E 3 HOH A 23 323 100 HOH HOH . 
E 3 HOH A 24 324 101 HOH HOH . 
E 3 HOH A 25 325 98 HOH HOH . 
E 3 HOH A 26 326 128 HOH HOH . 
E 3 HOH A 27 327 8 HOH HOH . 
E 3 HOH A 28 328 17 HOH HOH . 
E 3 HOH A 29 329 97 HOH HOH . 
E 3 HOH A 30 330 4 HOH HOH . 
E 3 HOH A 31 331 6 HOH HOH . 
E 3 HOH A 32 332 5 HOH HOH . 
E 3 HOH A 33 333 102 HOH HOH . 
E 3 HOH A 34 334 49 HOH HOH . 
E 3 HOH A 35 335 82 HOH HOH . 
E 3 HOH A 36 336 48 HOH HOH . 
E 3 HOH A 37 337 45 HOH HOH . 
E 3 HOH A 38 338 74 HOH HOH . 
E 3 HOH A 39 339 61 HOH HOH . 
E 3 HOH A 40 340 16 HOH HOH . 
E 3 HOH A 41 341 54 HOH HOH . 
E 3 HOH A 42 342 50 HOH HOH . 
E 3 HOH A 43 343 24 HOH HOH . 
E 3 HOH A 44 344 25 HOH HOH . 
E 3 HOH A 45 345 10 HOH HOH . 
E 3 HOH A 46 346 158 HOH HOH . 
E 3 HOH A 47 347 66 HOH HOH . 
E 3 HOH A 48 348 78 HOH HOH . 
E 3 HOH A 49 349 35 HOH HOH . 
E 3 HOH A 50 350 93 HOH HOH . 
E 3 HOH A 51 351 19 HOH HOH . 
E 3 HOH A 52 352 52 HOH HOH . 
E 3 HOH A 53 353 32 HOH HOH . 
E 3 HOH A 54 354 168 HOH HOH . 
E 3 HOH A 55 355 13 HOH HOH . 
E 3 HOH A 56 356 159 HOH HOH . 
E 3 HOH A 57 357 142 HOH HOH . 
E 3 HOH A 58 358 141 HOH HOH . 
E 3 HOH A 59 359 9 HOH HOH . 
E 3 HOH A 60 360 22 HOH HOH . 
E 3 HOH A 61 361 73 HOH HOH . 
E 3 HOH A 62 362 15 HOH HOH . 
E 3 HOH A 63 363 89 HOH HOH . 
E 3 HOH A 64 364 172 HOH HOH . 
E 3 HOH A 65 365 119 HOH HOH . 
E 3 HOH A 66 366 27 HOH HOH . 
E 3 HOH A 67 367 147 HOH HOH . 
E 3 HOH A 68 368 120 HOH HOH . 
E 3 HOH A 69 369 139 HOH HOH . 
E 3 HOH A 70 370 90 HOH HOH . 
E 3 HOH A 71 371 113 HOH HOH . 
E 3 HOH A 72 372 118 HOH HOH . 
E 3 HOH A 73 373 69 HOH HOH . 
E 3 HOH A 74 374 161 HOH HOH . 
E 3 HOH A 75 375 173 HOH HOH . 
E 3 HOH A 76 376 153 HOH HOH . 
E 3 HOH A 77 377 170 HOH HOH . 
E 3 HOH A 78 378 154 HOH HOH . 
E 3 HOH A 79 379 14 HOH HOH . 
E 3 HOH A 80 380 163 HOH HOH . 
E 3 HOH A 81 381 106 HOH HOH . 
E 3 HOH A 82 382 88 HOH HOH . 
E 3 HOH A 83 383 174 HOH HOH . 
E 3 HOH A 84 384 123 HOH HOH . 
E 3 HOH A 85 385 103 HOH HOH . 
E 3 HOH A 86 386 162 HOH HOH . 
E 3 HOH A 87 387 126 HOH HOH . 
F 3 HOH B 1 301 144 HOH HOH . 
F 3 HOH B 2 302 111 HOH HOH . 
F 3 HOH B 3 303 31 HOH HOH . 
F 3 HOH B 4 304 75 HOH HOH . 
F 3 HOH B 5 305 18 HOH HOH . 
F 3 HOH B 6 306 83 HOH HOH . 
F 3 HOH B 7 307 12 HOH HOH . 
F 3 HOH B 8 308 169 HOH HOH . 
F 3 HOH B 9 309 30 HOH HOH . 
F 3 HOH B 10 310 33 HOH HOH . 
F 3 HOH B 11 311 65 HOH HOH . 
F 3 HOH B 12 312 40 HOH HOH . 
F 3 HOH B 13 313 138 HOH HOH . 
F 3 HOH B 14 314 55 HOH HOH . 
F 3 HOH B 15 315 29 HOH HOH . 
F 3 HOH B 16 316 57 HOH HOH . 
F 3 HOH B 17 317 62 HOH HOH . 
F 3 HOH B 18 318 21 HOH HOH . 
F 3 HOH B 19 319 105 HOH HOH . 
F 3 HOH B 20 320 143 HOH HOH . 
F 3 HOH B 21 321 115 HOH HOH . 
F 3 HOH B 22 322 11 HOH HOH . 
F 3 HOH B 23 323 92 HOH HOH . 
F 3 HOH B 24 324 26 HOH HOH . 
F 3 HOH B 25 325 117 HOH HOH . 
F 3 HOH B 26 326 84 HOH HOH . 
F 3 HOH B 27 327 145 HOH HOH . 
F 3 HOH B 28 328 125 HOH HOH . 
F 3 HOH B 29 329 51 HOH HOH . 
F 3 HOH B 30 330 127 HOH HOH . 
F 3 HOH B 31 331 133 HOH HOH . 
F 3 HOH B 32 332 85 HOH HOH . 
F 3 HOH B 33 333 99 HOH HOH . 
F 3 HOH B 34 334 63 HOH HOH . 
F 3 HOH B 35 335 41 HOH HOH . 
F 3 HOH B 36 336 171 HOH HOH . 
F 3 HOH B 37 337 67 HOH HOH . 
F 3 HOH B 38 338 148 HOH HOH . 
F 3 HOH B 39 339 156 HOH HOH . 
F 3 HOH B 40 340 155 HOH HOH . 
F 3 HOH B 41 341 157 HOH HOH . 
F 3 HOH B 42 342 175 HOH HOH . 
F 3 HOH B 43 343 76 HOH HOH . 
F 3 HOH B 44 344 59 HOH HOH . 
F 3 HOH B 45 345 3 HOH HOH . 
F 3 HOH B 46 346 95 HOH HOH . 
F 3 HOH B 47 347 53 HOH HOH . 
F 3 HOH B 48 348 109 HOH HOH . 
F 3 HOH B 49 349 60 HOH HOH . 
F 3 HOH B 50 350 39 HOH HOH . 
F 3 HOH B 51 351 81 HOH HOH . 
F 3 HOH B 52 352 130 HOH HOH . 
F 3 HOH B 53 353 68 HOH HOH . 
F 3 HOH B 54 354 121 HOH HOH . 
F 3 HOH B 55 355 64 HOH HOH . 
F 3 HOH B 56 356 137 HOH HOH . 
F 3 HOH B 57 357 108 HOH HOH . 
F 3 HOH B 58 358 36 HOH HOH . 
F 3 HOH B 59 359 71 HOH HOH . 
F 3 HOH B 60 360 70 HOH HOH . 
F 3 HOH B 61 361 140 HOH HOH . 
F 3 HOH B 62 362 114 HOH HOH . 
F 3 HOH B 63 363 96 HOH HOH . 
F 3 HOH B 64 364 164 HOH HOH . 
F 3 HOH B 65 365 165 HOH HOH . 
F 3 HOH B 66 366 167 HOH HOH . 
F 3 HOH B 67 367 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3 QOK . . . D 2 21.926 -50.016 26.481 0.96 68.4 ? N3 QOK 201 B 1 
HETATM 2 C C4 QOK . . . D 2 20.283 -49.752 24.518 0.96 67.07 ? C4 QOK 201 B 1 
HETATM 3 C C7 QOK . . . D 2 21.824 -50.8 27.623 0.96 67.74 ? C7 QOK 201 B 1 
HETATM 4 C C8 QOK . . . D 2 22.952 -49.058 26.089 0.96 70.53 ? C8 QOK 201 B 1 
HETATM 5 C C17 QOK . . . D 2 25.277 -51.226 24.325 0.96 75.19 ? C17 QOK 201 B 1 
HETATM 6 C C1 QOK . . . D 2 20.801 -50.315 25.729 0.96 67.62 ? C1 QOK 201 B 1 
HETATM 7 N N9 QOK . . . D 2 19.027 -50.292 24.174 0.96 65.61 ? N9 QOK 201 B 1 
HETATM 8 C C14 QOK . . . D 2 18.345 -49.71 23.016 0.96 61.27 ? C14 QOK 201 B 1 
HETATM 9 O O10 QOK . . . D 2 20.816 -48.883 23.818 0.96 69.35 ? O10 QOK 201 B 1 
HETATM 10 O O13 QOK . . . D 2 24.155 -49.675 25.725 0.96 70.04 ? O13 QOK 201 B 1 
HETATM 11 C C16 QOK . . . D 2 24.139 -50.259 24.436 0.96 72.78 ? C16 QOK 201 B 1 
HETATM 12 O O18 QOK . . . D 2 26.509 -50.534 24.272 0.96 78.05 ? O18 QOK 201 B 1 
HETATM 13 C C19 QOK . . . D 2 27.629 -51.404 24.16 0.96 77.05 ? C19 QOK 201 B 1 
HETATM 14 N N6 QOK . . . D 2 20.774 -51.592 27.61 0.96 66.62 ? N6 QOK 201 B 1 
HETATM 15 C C2 QOK . . . D 2 20.138 -51.274 26.449 0.96 66.75 ? C2 QOK 201 B 1 
HETATM 16 N N5 QOK . . . D 2 18.921 -51.769 26.045 0.96 66.12 ? N5 QOK 201 B 1 
HETATM 17 C C11 QOK . . . D 2 18.337 -51.287 24.878 0.96 65.51 ? C11 QOK 201 B 1 
HETATM 18 O O15 QOK . . . D 2 17.265 -51.715 24.487 0.96 69.67 ? O15 QOK 201 B 1 
HETATM 19 C C12 QOK . . . D 2 18.181 -52.748 26.85 0.96 63.34 ? C12 QOK 201 B 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           19 
#