data_6ZZA
#
_model_server_result.job_id            LzFgxox8yEwBlO4jZCCKXQ 
_model_server_result.datetime_utc      '2024-11-22 09:05:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zza 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6ZZA 
#
_exptl.entry_id    6ZZA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              658.412 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ZZA 
_cell.length_a            93.83 
_cell.length_b            93.83 
_cell.length_c            33.6 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZZA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 162.518327 22.4 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H24 N10 O12 P2' 
_chem_comp.formula_weight    658.412 
_chem_comp.id                2BA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 2BA doub 1 n n 
P O2P 2BA sing 2 n n 
P O5' 2BA sing 3 n n 
P "O3'1" 2BA sing 4 n n 
O5' C5' 2BA sing 5 n n 
C5' C4' 2BA sing 6 n n 
C4' O4' 2BA sing 7 n n 
C4' C3' 2BA sing 8 n n 
O4' C1' 2BA sing 9 n n 
C3' O3' 2BA sing 10 n n 
C3' C2' 2BA sing 11 n n 
O3' P1 2BA sing 12 n n 
C2' O2' 2BA sing 13 n n 
C2' C1' 2BA sing 14 n n 
C1' N9 2BA sing 15 n n 
N9 C8 2BA sing 16 n y 
N9 C4 2BA sing 17 n y 
C8 N7 2BA doub 18 n y 
N7 C5 2BA sing 19 n y 
C5 C6 2BA doub 20 n y 
C5 C4 2BA sing 21 n y 
C6 N6 2BA sing 22 n n 
C6 N1 2BA sing 23 n y 
N1 C2 2BA doub 24 n y 
C2 N3 2BA sing 25 n y 
N3 C4 2BA doub 26 n y 
P1 O1P1 2BA doub 27 n n 
P1 O2P1 2BA sing 28 n n 
P1 "O5'1" 2BA sing 29 n n 
"O5'1" "C5'1" 2BA sing 30 n n 
"C5'1" "C4'1" 2BA sing 31 n n 
"C4'1" "O4'1" 2BA sing 32 n n 
"C4'1" "C3'1" 2BA sing 33 n n 
"O4'1" "C1'1" 2BA sing 34 n n 
"C3'1" "O3'1" 2BA sing 35 n n 
"C3'1" "C2'1" 2BA sing 36 n n 
"C2'1" "O2'1" 2BA sing 37 n n 
"C2'1" "C1'1" 2BA sing 38 n n 
"C1'1" N91 2BA sing 39 n n 
N91 C81 2BA sing 40 n y 
N91 C41 2BA sing 41 n y 
C81 N71 2BA doub 42 n y 
N71 C51 2BA sing 43 n y 
C51 C61 2BA doub 44 n y 
C51 C41 2BA sing 45 n y 
C61 N61 2BA sing 46 n n 
C61 N11 2BA sing 47 n y 
N11 C21 2BA doub 48 n y 
C21 N31 2BA sing 49 n y 
N31 C41 2BA doub 50 n y 
C5' H5' 2BA sing 51 n n 
C5' "H5'A" 2BA sing 52 n n 
C4' H4' 2BA sing 53 n n 
C3' H3' 2BA sing 54 n n 
C2' H2' 2BA sing 55 n n 
O2' HO2' 2BA sing 56 n n 
C1' H1' 2BA sing 57 n n 
C8 H8 2BA sing 58 n n 
N6 HN6 2BA sing 59 n n 
N6 HN6A 2BA sing 60 n n 
C2 H2 2BA sing 61 n n 
"C5'1" HC5' 2BA sing 62 n n 
"C5'1" HC5A 2BA sing 63 n n 
"C4'1" HC4' 2BA sing 64 n n 
"C3'1" HC3' 2BA sing 65 n n 
"C2'1" HC2' 2BA sing 66 n n 
"O2'1" HO2A 2BA sing 67 n n 
"C1'1" HC1' 2BA sing 68 n n 
C81 HC8 2BA sing 69 n n 
N61 H1N6 2BA sing 70 n n 
N61 H1NA 2BA sing 71 n n 
C21 HC2 2BA sing 72 n n 
O2P H2P 2BA sing 73 n n 
O2P1 H2OP 2BA sing 74 n n 
#
_atom_sites.entry_id                     6ZZA 
_atom_sites.fract_transf_matrix[1][1]    0.010658 
_atom_sites.fract_transf_matrix[1][2]    0.006153 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012306 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029762 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 2BA A 1 201 358 2BA 2BA . 
C 3 SO4 A 1 202 1 SO4 SO4 . 
D 4 HOH A 1 301 1 HOH HOH . 
D 4 HOH A 2 302 18 HOH HOH . 
D 4 HOH A 3 303 10 HOH HOH . 
D 4 HOH A 4 304 1 HOH HOH . 
D 4 HOH A 5 305 8 HOH HOH . 
D 4 HOH A 6 306 11 HOH HOH . 
D 4 HOH A 7 307 4 HOH HOH . 
D 4 HOH A 8 308 2 HOH HOH . 
D 4 HOH A 9 309 46 HOH HOH . 
D 4 HOH A 10 310 11 HOH HOH . 
D 4 HOH A 11 311 7 HOH HOH . 
D 4 HOH A 12 312 15 HOH HOH . 
D 4 HOH A 13 313 12 HOH HOH . 
D 4 HOH A 14 314 19 HOH HOH . 
D 4 HOH A 15 315 9 HOH HOH . 
D 4 HOH A 16 316 5 HOH HOH . 
D 4 HOH A 17 317 37 HOH HOH . 
D 4 HOH A 18 318 16 HOH HOH . 
D 4 HOH A 19 319 34 HOH HOH . 
D 4 HOH A 20 320 32 HOH HOH . 
D 4 HOH A 21 321 20 HOH HOH . 
D 4 HOH A 22 322 17 HOH HOH . 
D 4 HOH A 23 323 6 HOH HOH . 
D 4 HOH A 24 324 30 HOH HOH . 
D 4 HOH A 25 325 29 HOH HOH . 
D 4 HOH A 26 326 23 HOH HOH . 
D 4 HOH A 27 327 3 HOH HOH . 
D 4 HOH A 28 328 9 HOH HOH . 
D 4 HOH A 29 329 13 HOH HOH . 
D 4 HOH A 30 330 7 HOH HOH . 
D 4 HOH A 31 331 5 HOH HOH . 
D 4 HOH A 32 332 17 HOH HOH . 
D 4 HOH A 33 333 26 HOH HOH . 
D 4 HOH A 34 334 31 HOH HOH . 
D 4 HOH A 35 335 12 HOH HOH . 
D 4 HOH A 36 336 14 HOH HOH . 
D 4 HOH A 37 337 2 HOH HOH . 
D 4 HOH A 38 338 28 HOH HOH . 
D 4 HOH A 39 339 13 HOH HOH . 
D 4 HOH A 40 340 25 HOH HOH . 
D 4 HOH A 41 341 10 HOH HOH . 
D 4 HOH A 42 342 3 HOH HOH . 
D 4 HOH A 43 343 22 HOH HOH . 
D 4 HOH A 44 344 8 HOH HOH . 
D 4 HOH A 45 345 18 HOH HOH . 
D 4 HOH A 46 346 44 HOH HOH . 
D 4 HOH A 47 347 40 HOH HOH . 
D 4 HOH A 48 348 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 2BA . . . B 2 7.169 80.389 5.457 1 40.73 ? P 2BA 201 A 1 
HETATM 2 O O1P 2BA . . . B 2 7.444 79.772 4.146 1 41.21 -1 O1P 2BA 201 A 1 
HETATM 3 O O2P 2BA . . . B 2 8.451 80.934 6.119 1 38.5 ? O2P 2BA 201 A 1 
HETATM 4 O O5' 2BA . . . B 2 6.106 81.549 5.396 1 40.38 ? O5' 2BA 201 A 1 
HETATM 5 C C5' 2BA . . . B 2 5.724 82.466 6.363 1 39.03 ? C5' 2BA 201 A 1 
HETATM 6 C C4' 2BA . . . B 2 4.373 83.068 5.927 1 38.43 ? C4' 2BA 201 A 1 
HETATM 7 O O4' 2BA . . . B 2 4.593 83.742 4.725 1 38.7 ? O4' 2BA 201 A 1 
HETATM 8 C C3' 2BA . . . B 2 3.256 82.061 5.598 1 39.32 ? C3' 2BA 201 A 1 
HETATM 9 O O3' 2BA . . . B 2 2.622 81.722 6.765 1 40.19 ? O3' 2BA 201 A 1 
HETATM 10 C C2' 2BA . . . B 2 2.35 82.912 4.647 1 38.21 ? C2' 2BA 201 A 1 
HETATM 11 O O2' 2BA . . . B 2 1.629 83.819 5.423 1 40.03 ? O2' 2BA 201 A 1 
HETATM 12 C C1' 2BA . . . B 2 3.452 83.707 3.874 1 36.41 ? C1' 2BA 201 A 1 
HETATM 13 N N9 2BA . . . B 2 3.844 83.051 2.572 1 33.84 ? N9 2BA 201 A 1 
HETATM 14 C C8 2BA . . . B 2 4.845 82.056 2.309 1 33.79 ? C8 2BA 201 A 1 
HETATM 15 N N7 2BA . . . B 2 4.956 81.724 1.013 1 34.58 ? N7 2BA 201 A 1 
HETATM 16 C C5 2BA . . . B 2 3.987 82.53 0.38 1 34.6 ? C5 2BA 201 A 1 
HETATM 17 C C6 2BA . . . B 2 3.599 82.66 -0.988 1 36.02 ? C6 2BA 201 A 1 
HETATM 18 N N6 2BA . . . B 2 4.276 81.992 -1.952 1 34.78 ? N6 2BA 201 A 1 
HETATM 19 N N1 2BA . . . B 2 2.542 83.526 -1.342 1 35.83 ? N1 2BA 201 A 1 
HETATM 20 C C2 2BA . . . B 2 1.936 84.248 -0.319 1 30.98 ? C2 2BA 201 A 1 
HETATM 21 N N3 2BA . . . B 2 2.231 84.244 0.991 1 27.62 ? N3 2BA 201 A 1 
HETATM 22 C C4 2BA . . . B 2 3.272 83.357 1.318 1 31.26 ? C4 2BA 201 A 1 
HETATM 23 P P1 2BA . . . B 2 1.773 80.422 7.011 1 40.67 ? P1 2BA 201 A 1 
HETATM 24 O O1P1 2BA . . . B 2 0.713 80.164 6.022 1 43.31 -1 O1P1 2BA 201 A 1 
HETATM 25 O O2P1 2BA . . . B 2 1.134 80.585 8.422 1 43.56 ? O2P1 2BA 201 A 1 
HETATM 26 O "O5'1" 2BA . . . B 2 2.828 79.258 7.036 1 40.2 ? "O5'1" 2BA 201 A 1 
HETATM 27 C "C5'1" 2BA . . . B 2 3.835 79.036 7.964 1 38.4 ? "C5'1" 2BA 201 A 1 
HETATM 28 C "C4'1" 2BA . . . B 2 4.837 78.02 7.385 1 38.25 ? "C4'1" 2BA 201 A 1 
HETATM 29 O "O4'1" 2BA . . . B 2 4.133 76.847 7.022 1 37.42 ? "O4'1" 2BA 201 A 1 
HETATM 30 C "C3'1" 2BA . . . B 2 5.552 78.463 6.1 1 40.03 ? "C3'1" 2BA 201 A 1 
HETATM 31 O "O3'1" 2BA . . . B 2 6.571 79.306 6.422 1 43.17 ? "O3'1" 2BA 201 A 1 
HETATM 32 C "C2'1" 2BA . . . B 2 6.019 77.092 5.52 1 37.23 ? "C2'1" 2BA 201 A 1 
HETATM 33 O "O2'1" 2BA . . . B 2 7.132 76.651 6.226 1 35.06 ? "O2'1" 2BA 201 A 1 
HETATM 34 C "C1'1" 2BA . . . B 2 4.767 76.196 5.898 1 37.94 ? "C1'1" 2BA 201 A 1 
HETATM 35 N N91 2BA . . . B 2 3.79 76.18 4.765 1 36.09 ? N91 2BA 201 A 1 
HETATM 36 C C81 2BA . . . B 2 2.603 76.925 4.615 1 34.62 ? C81 2BA 201 A 1 
HETATM 37 N N71 2BA . . . B 2 2.002 76.689 3.447 1 38.09 ? N71 2BA 201 A 1 
HETATM 38 C C51 2BA . . . B 2 2.81 75.749 2.773 1 37.34 ? C51 2BA 201 A 1 
HETATM 39 C C61 2BA . . . B 2 2.709 75.11 1.484 1 38.07 ? C61 2BA 201 A 1 
HETATM 40 N N61 2BA . . . B 2 1.735 75.444 0.613 1 36.21 ? N61 2BA 201 A 1 
HETATM 41 N N11 2BA . . . B 2 3.656 74.175 1.082 1 39.63 ? N11 2BA 201 A 1 
HETATM 42 C C21 2BA . . . B 2 4.69 73.927 1.963 1 37.23 ? C21 2BA 201 A 1 
HETATM 43 N N31 2BA . . . B 2 4.918 74.484 3.186 1 38.19 ? N31 2BA 201 A 1 
HETATM 44 C C41 2BA . . . B 2 3.929 75.408 3.571 1 37.64 ? C41 2BA 201 A 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#