data_6ZZM # _model_server_result.job_id FKQtK68hnd7QtYlB623Pkw _model_server_result.datetime_utc '2025-03-13 19:48:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zzm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 6ZZM # _exptl.entry_id 6ZZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZZM _cell.length_a 100.619 _cell.length_b 100.619 _cell.length_c 281.568 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,4 B,D,F 2 1,3,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 100.619 0 0 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 50.3095 87.13861 0 5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6ZZM _atom_sites.fract_transf_matrix[1][1] 0.009938 _atom_sites.fract_transf_matrix[1][2] 0.005738 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 COA A 1 701 1 COA COA . D 2 COA B 1 701 2 COA COA . E 3 HOH A 1 801 120 HOH HOH . E 3 HOH A 2 802 65 HOH HOH . E 3 HOH A 3 803 25 HOH HOH . E 3 HOH A 4 804 100 HOH HOH . E 3 HOH A 5 805 111 HOH HOH . E 3 HOH A 6 806 21 HOH HOH . E 3 HOH A 7 807 4 HOH HOH . E 3 HOH A 8 808 33 HOH HOH . E 3 HOH A 9 809 15 HOH HOH . E 3 HOH A 10 810 109 HOH HOH . E 3 HOH A 11 811 119 HOH HOH . E 3 HOH A 12 812 88 HOH HOH . E 3 HOH A 13 813 52 HOH HOH . E 3 HOH A 14 814 130 HOH HOH . E 3 HOH A 15 815 127 HOH HOH . E 3 HOH A 16 816 1 HOH HOH . E 3 HOH A 17 817 53 HOH HOH . E 3 HOH A 18 818 97 HOH HOH . E 3 HOH A 19 819 6 HOH HOH . E 3 HOH A 20 820 72 HOH HOH . E 3 HOH A 21 821 23 HOH HOH . E 3 HOH A 22 822 19 HOH HOH . E 3 HOH A 23 823 51 HOH HOH . E 3 HOH A 24 824 34 HOH HOH . E 3 HOH A 25 825 11 HOH HOH . E 3 HOH A 26 826 126 HOH HOH . E 3 HOH A 27 827 125 HOH HOH . E 3 HOH A 28 828 99 HOH HOH . E 3 HOH A 29 829 123 HOH HOH . E 3 HOH A 30 830 117 HOH HOH . E 3 HOH A 31 831 38 HOH HOH . E 3 HOH A 32 832 32 HOH HOH . E 3 HOH A 33 833 96 HOH HOH . E 3 HOH A 34 834 124 HOH HOH . E 3 HOH A 35 835 104 HOH HOH . E 3 HOH A 36 836 113 HOH HOH . E 3 HOH A 37 837 27 HOH HOH . E 3 HOH A 38 838 80 HOH HOH . E 3 HOH A 39 839 24 HOH HOH . E 3 HOH A 40 840 12 HOH HOH . E 3 HOH A 41 841 48 HOH HOH . E 3 HOH A 42 842 14 HOH HOH . E 3 HOH A 43 843 45 HOH HOH . E 3 HOH A 44 844 94 HOH HOH . E 3 HOH A 45 845 29 HOH HOH . E 3 HOH A 46 846 122 HOH HOH . E 3 HOH A 47 847 62 HOH HOH . E 3 HOH A 48 848 49 HOH HOH . E 3 HOH A 49 849 40 HOH HOH . E 3 HOH A 50 850 30 HOH HOH . E 3 HOH A 51 851 107 HOH HOH . E 3 HOH A 52 852 131 HOH HOH . E 3 HOH A 53 853 102 HOH HOH . E 3 HOH A 54 854 70 HOH HOH . E 3 HOH A 55 855 77 HOH HOH . E 3 HOH A 56 856 69 HOH HOH . E 3 HOH A 57 857 86 HOH HOH . E 3 HOH A 58 858 85 HOH HOH . E 3 HOH A 59 859 74 HOH HOH . E 3 HOH A 60 860 75 HOH HOH . E 3 HOH A 61 861 73 HOH HOH . E 3 HOH A 62 862 76 HOH HOH . E 3 HOH A 63 863 87 HOH HOH . E 3 HOH A 64 864 71 HOH HOH . F 3 HOH B 1 801 17 HOH HOH . F 3 HOH B 2 802 84 HOH HOH . F 3 HOH B 3 803 114 HOH HOH . F 3 HOH B 4 804 67 HOH HOH . F 3 HOH B 5 805 82 HOH HOH . F 3 HOH B 6 806 129 HOH HOH . F 3 HOH B 7 807 105 HOH HOH . F 3 HOH B 8 808 103 HOH HOH . F 3 HOH B 9 809 108 HOH HOH . F 3 HOH B 10 810 3 HOH HOH . F 3 HOH B 11 811 18 HOH HOH . F 3 HOH B 12 812 93 HOH HOH . F 3 HOH B 13 813 2 HOH HOH . F 3 HOH B 14 814 31 HOH HOH . F 3 HOH B 15 815 7 HOH HOH . F 3 HOH B 16 816 16 HOH HOH . F 3 HOH B 17 817 128 HOH HOH . F 3 HOH B 18 818 110 HOH HOH . F 3 HOH B 19 819 106 HOH HOH . F 3 HOH B 20 820 42 HOH HOH . F 3 HOH B 21 821 91 HOH HOH . F 3 HOH B 22 822 20 HOH HOH . F 3 HOH B 23 823 95 HOH HOH . F 3 HOH B 24 824 89 HOH HOH . F 3 HOH B 25 825 92 HOH HOH . F 3 HOH B 26 826 90 HOH HOH . F 3 HOH B 27 827 61 HOH HOH . F 3 HOH B 28 828 44 HOH HOH . F 3 HOH B 29 829 115 HOH HOH . F 3 HOH B 30 830 28 HOH HOH . F 3 HOH B 31 831 66 HOH HOH . F 3 HOH B 32 832 50 HOH HOH . F 3 HOH B 33 833 112 HOH HOH . F 3 HOH B 34 834 9 HOH HOH . F 3 HOH B 35 835 55 HOH HOH . F 3 HOH B 36 836 68 HOH HOH . F 3 HOH B 37 837 10 HOH HOH . F 3 HOH B 38 838 26 HOH HOH . F 3 HOH B 39 839 98 HOH HOH . F 3 HOH B 40 840 57 HOH HOH . F 3 HOH B 41 841 41 HOH HOH . F 3 HOH B 42 842 118 HOH HOH . F 3 HOH B 43 843 22 HOH HOH . F 3 HOH B 44 844 43 HOH HOH . F 3 HOH B 45 845 121 HOH HOH . F 3 HOH B 46 846 5 HOH HOH . F 3 HOH B 47 847 58 HOH HOH . F 3 HOH B 48 848 37 HOH HOH . F 3 HOH B 49 849 46 HOH HOH . F 3 HOH B 50 850 8 HOH HOH . F 3 HOH B 51 851 116 HOH HOH . F 3 HOH B 52 852 36 HOH HOH . F 3 HOH B 53 853 60 HOH HOH . F 3 HOH B 54 854 59 HOH HOH . F 3 HOH B 55 855 101 HOH HOH . F 3 HOH B 56 856 39 HOH HOH . F 3 HOH B 57 857 63 HOH HOH . F 3 HOH B 58 858 56 HOH HOH . F 3 HOH B 59 859 13 HOH HOH . F 3 HOH B 60 860 54 HOH HOH . F 3 HOH B 61 861 35 HOH HOH . F 3 HOH B 62 862 64 HOH HOH . F 3 HOH B 63 863 47 HOH HOH . F 3 HOH B 64 864 79 HOH HOH . F 3 HOH B 65 865 78 HOH HOH . F 3 HOH B 66 866 81 HOH HOH . F 3 HOH B 67 867 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . C 2 38.122 39.38 88.385 1 63.37 ? N1A COA 701 A 1 HETATM 2 C C2A COA . . . C 2 37.672 40.094 87.349 1 63.15 ? C2A COA 701 A 1 HETATM 3 N N3A COA . . . C 2 36.77 41.078 87.337 1 63.31 ? N3A COA 701 A 1 HETATM 4 C C4A COA . . . C 2 36.327 41.34 88.573 1 64.32 ? C4A COA 701 A 1 HETATM 5 C C5A COA . . . C 2 36.701 40.695 89.739 1 64.48 ? C5A COA 701 A 1 HETATM 6 C C6A COA . . . C 2 37.634 39.645 89.617 1 63.57 ? C6A COA 701 A 1 HETATM 7 N N6A COA . . . C 2 37.995 38.855 90.626 1 63.03 ? N6A COA 701 A 1 HETATM 8 N N7A COA . . . C 2 36.09 41.28 90.84 1 64.83 ? N7A COA 701 A 1 HETATM 9 C C8A COA . . . C 2 35.373 42.246 90.32 1 64.71 ? C8A COA 701 A 1 HETATM 10 N N9A COA . . . C 2 35.457 42.333 88.958 1 65.04 ? N9A COA 701 A 1 HETATM 11 C C1B COA . . . C 2 34.724 43.263 88.107 1 66.13 ? C1B COA 701 A 1 HETATM 12 C C2B COA . . . C 2 33.207 43.184 88.282 1 66.89 ? C2B COA 701 A 1 HETATM 13 O O2B COA . . . C 2 32.62 42.179 87.457 1 66.63 ? O2B COA 701 A 1 HETATM 14 C C3B COA . . . C 2 32.806 44.611 87.91 1 67.72 ? C3B COA 701 A 1 HETATM 15 O O3B COA . . . C 2 32.933 44.714 86.476 1 69.57 ? O3B COA 701 A 1 HETATM 16 P P3B COA . . . C 2 32.126 45.646 85.459 1 70.62 ? P3B COA 701 A 1 HETATM 17 O O7A COA . . . C 2 32.756 45.476 84.118 1 70.67 ? O7A COA 701 A 1 HETATM 18 O O8A COA . . . C 2 30.661 45.18 85.509 1 70.8 ? O8A COA 701 A 1 HETATM 19 O O9A COA . . . C 2 32.268 47.075 86.064 1 70.79 ? O9A COA 701 A 1 HETATM 20 C C4B COA . . . C 2 33.956 45.454 88.472 1 66.55 ? C4B COA 701 A 1 HETATM 21 O O4B COA . . . C 2 35.1 44.577 88.472 1 66.49 ? O4B COA 701 A 1 HETATM 22 C C5B COA . . . C 2 33.774 46.057 89.845 1 65.56 ? C5B COA 701 A 1 HETATM 23 O O5B COA . . . C 2 33.114 45.106 90.7 1 65.25 ? O5B COA 701 A 1 HETATM 24 P P1A COA . . . C 2 32.493 45.48 92.162 1 64.88 ? P1A COA 701 A 1 HETATM 25 O O1A COA . . . C 2 31.63 46.688 92.117 1 65.12 ? O1A COA 701 A 1 HETATM 26 O O2A COA . . . C 2 33.632 45.618 93.192 1 64.11 ? O2A COA 701 A 1 HETATM 27 O O3A COA . . . C 2 31.583 44.237 92.569 1 64.48 ? O3A COA 701 A 1 HETATM 28 P P2A COA . . . C 2 31.742 42.694 92.942 1 64.11 ? P2A COA 701 A 1 HETATM 29 O O4A COA . . . C 2 30.395 42.073 92.945 1 64.19 ? O4A COA 701 A 1 HETATM 30 O O5A COA . . . C 2 32.667 42.006 91.964 1 63.22 ? O5A COA 701 A 1 HETATM 31 O O6A COA . . . C 2 32.408 42.618 94.407 1 63.78 ? O6A COA 701 A 1 HETATM 32 C CBP COA . . . C 2 32.632 43.392 96.697 1 62.48 ? CBP COA 701 A 1 HETATM 33 C CCP COA . . . C 2 31.723 43.296 95.472 1 62.88 ? CCP COA 701 A 1 HETATM 34 C CDP COA . . . C 2 31.856 44.022 97.865 1 62.27 ? CDP COA 701 A 1 HETATM 35 C CEP COA . . . C 2 33.094 41.982 97.078 1 61.87 ? CEP COA 701 A 1 HETATM 36 C CAP COA . . . C 2 33.875 44.251 96.341 1 62.82 ? CAP COA 701 A 1 HETATM 37 O OAP COA . . . C 2 33.563 45.607 96.072 1 62.56 ? OAP COA 701 A 1 HETATM 38 C C9P COA . . . C 2 35.012 44.166 97.35 1 63.58 ? C9P COA 701 A 1 HETATM 39 O O9P COA . . . C 2 34.949 44.791 98.403 1 63.25 ? O9P COA 701 A 1 HETATM 40 N N8P COA . . . C 2 36.046 43.383 97.023 1 64.99 ? N8P COA 701 A 1 HETATM 41 C C7P COA . . . C 2 37.184 43.153 97.904 1 65.96 ? C7P COA 701 A 1 HETATM 42 C C6P COA . . . C 2 36.961 41.977 98.821 1 67.64 ? C6P COA 701 A 1 HETATM 43 C C5P COA . . . C 2 38.074 41.846 99.83 1 69.72 ? C5P COA 701 A 1 HETATM 44 O O5P COA . . . C 2 38.467 42.815 100.465 1 69.94 ? O5P COA 701 A 1 HETATM 45 N N4P COA . . . C 2 38.635 40.65 99.947 1 71.61 ? N4P COA 701 A 1 HETATM 46 C C3P COA . . . C 2 39.859 40.44 100.707 1 73.67 ? C3P COA 701 A 1 HETATM 47 C C2P COA . . . C 2 41.003 39.899 99.871 1 75.93 ? C2P COA 701 A 1 HETATM 48 S S1P COA . . . C 2 41.466 41.163 98.656 1 78.28 ? S1P COA 701 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #