data_7A0F # _model_server_result.job_id I4m3Jj0Hb0zoeidu-DjSYg _model_server_result.datetime_utc '2024-11-12 19:31:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7A0F # _exptl.entry_id 7A0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7A0F _cell.length_a 58.069 _cell.length_b 101.498 _cell.length_c 142.075 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 HHH CYS 28 1_555 A SG CYS 44 HHH CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 119 HHH CYS 119 1_555 C SG CYS 22 LLL CYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 173 HHH CYS 173 1_555 A SG CYS 187 HHH CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 201 HHH CYS 201 1_555 A SG CYS 231 HHH CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf5 B SG CYS 6 III CYS 6 1_555 B SG CYS 14 III CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 16 III CYS 16 1_555 B SG CYS 28 III CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 A ND2 ASN 53 HHH ASN 53 1_555 D C1 NAG . HHH NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 B SE SEC 22 III SEC 22 1_555 B SE SEC 39 III SEC 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc1 A O ARG 233 HHH ARG 233 1_555 E NA NA . HHH NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc2 A O LYS 236 HHH LYS 236 1_555 E NA NA . HHH NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc3 E NA NA . HHH NA 302 1_555 F O HOH . HHH HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 E NA NA . HHH NA 302 1_555 F O HOH . HHH HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc5 E NA NA . HHH NA 302 1_555 F O HOH . HHH HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7A0F _atom_sites.fract_transf_matrix[1][1] 0.017221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG HHH 1 301 262 NAG NAG . E 5 NA HHH 1 302 1 NA NA . F 6 HOH HHH 1 401 120 HOH HOH . F 6 HOH HHH 2 402 90 HOH HOH . F 6 HOH HHH 3 403 37 HOH HOH . F 6 HOH HHH 4 404 96 HOH HOH . F 6 HOH HHH 5 405 113 HOH HOH . F 6 HOH HHH 6 406 118 HOH HOH . F 6 HOH HHH 7 407 121 HOH HOH . F 6 HOH HHH 8 408 162 HOH HOH . F 6 HOH HHH 9 409 127 HOH HOH . F 6 HOH HHH 10 410 169 HOH HOH . F 6 HOH HHH 11 411 154 HOH HOH . F 6 HOH HHH 12 412 116 HOH HOH . F 6 HOH HHH 13 413 163 HOH HOH . F 6 HOH HHH 14 414 161 HOH HOH . F 6 HOH HHH 15 415 156 HOH HOH . F 6 HOH HHH 16 416 159 HOH HOH . F 6 HOH HHH 17 417 129 HOH HOH . F 6 HOH HHH 18 418 29 HOH HOH . F 6 HOH HHH 19 419 123 HOH HOH . F 6 HOH HHH 20 420 99 HOH HOH . F 6 HOH HHH 21 421 160 HOH HOH . F 6 HOH HHH 22 422 60 HOH HOH . F 6 HOH HHH 23 423 171 HOH HOH . F 6 HOH HHH 24 424 75 HOH HOH . F 6 HOH HHH 25 425 119 HOH HOH . F 6 HOH HHH 26 426 157 HOH HOH . F 6 HOH HHH 27 427 168 HOH HOH . F 6 HOH HHH 28 428 124 HOH HOH . F 6 HOH HHH 29 429 178 HOH HOH . F 6 HOH HHH 30 430 140 HOH HOH . F 6 HOH HHH 31 431 158 HOH HOH . F 6 HOH HHH 32 432 130 HOH HOH . F 6 HOH HHH 33 433 91 HOH HOH . F 6 HOH HHH 34 434 27 HOH HOH . F 6 HOH HHH 35 435 170 HOH HOH . F 6 HOH HHH 36 436 142 HOH HOH . F 6 HOH HHH 37 437 182 HOH HOH . F 6 HOH HHH 38 438 143 HOH HOH . F 6 HOH HHH 39 439 151 HOH HOH . F 6 HOH HHH 40 440 177 HOH HOH . F 6 HOH HHH 41 441 6 HOH HOH . F 6 HOH HHH 42 442 172 HOH HOH . F 6 HOH HHH 43 443 144 HOH HOH . F 6 HOH HHH 44 444 146 HOH HOH . F 6 HOH HHH 45 445 128 HOH HOH . F 6 HOH HHH 46 446 136 HOH HOH . F 6 HOH HHH 47 447 134 HOH HOH . F 6 HOH HHH 48 448 176 HOH HOH . F 6 HOH HHH 49 449 135 HOH HOH . F 6 HOH HHH 50 450 45 HOH HOH . F 6 HOH HHH 51 451 133 HOH HOH . F 6 HOH HHH 52 452 132 HOH HOH . F 6 HOH HHH 53 453 141 HOH HOH . F 6 HOH HHH 54 454 164 HOH HOH . F 6 HOH HHH 55 455 137 HOH HOH . F 6 HOH HHH 56 456 138 HOH HOH . G 6 HOH III 1 101 180 HOH HOH . G 6 HOH III 2 102 44 HOH HOH . G 6 HOH III 3 103 111 HOH HOH . G 6 HOH III 4 104 20 HOH HOH . G 6 HOH III 5 105 114 HOH HOH . G 6 HOH III 6 106 152 HOH HOH . G 6 HOH III 7 107 173 HOH HOH . G 6 HOH III 8 108 155 HOH HOH . G 6 HOH III 9 109 179 HOH HOH . G 6 HOH III 10 110 181 HOH HOH . G 6 HOH III 11 111 150 HOH HOH . G 6 HOH III 12 112 165 HOH HOH . G 6 HOH III 13 113 166 HOH HOH . H 6 HOH LLL 1 101 167 HOH HOH . H 6 HOH LLL 2 102 147 HOH HOH . H 6 HOH LLL 3 103 28 HOH HOH . H 6 HOH LLL 4 104 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 25.234 25.117 142.854 1 81.29 ? C1 NAG 301 HHH 1 HETATM 2 C C2 NAG . . . D 4 25.989 24.563 144.08 1 82.72 ? C2 NAG 301 HHH 1 HETATM 3 C C3 NAG . . . D 4 25.168 24.837 145.337 1 85.41 ? C3 NAG 301 HHH 1 HETATM 4 C C4 NAG . . . D 4 25.412 26.324 145.59 1 86.59 ? C4 NAG 301 HHH 1 HETATM 5 C C5 NAG . . . D 4 24.922 27.16 144.38 1 82.43 ? C5 NAG 301 HHH 1 HETATM 6 C C6 NAG . . . D 4 25.726 28.452 144.272 1 79.09 ? C6 NAG 301 HHH 1 HETATM 7 C C7 NAG . . . D 4 25.764 22.154 143.534 1 67.73 ? C7 NAG 301 HHH 1 HETATM 8 C C8 NAG . . . D 4 26.517 20.849 143.323 1 57.95 ? C8 NAG 301 HHH 1 HETATM 9 N N2 NAG . . . D 4 26.491 23.19 143.949 1 74.66 ? N2 NAG 301 HHH 1 HETATM 10 O O3 NAG . . . D 4 25.577 24.032 146.451 1 83.34 ? O3 NAG 301 HHH 1 HETATM 11 O O4 NAG . . . D 4 24.854 26.739 146.863 1 82.76 ? O4 NAG 301 HHH 1 HETATM 12 O O5 NAG . . . D 4 24.988 26.535 143.067 1 81.75 ? O5 NAG 301 HHH 1 HETATM 13 O O6 NAG . . . D 4 25.163 29.276 143.244 1 80.65 ? O6 NAG 301 HHH 1 HETATM 14 O O7 NAG . . . D 4 24.555 22.304 143.353 1 60.02 ? O7 NAG 301 HHH 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 210 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #