data_7A0X # _model_server_result.job_id FU0MI7dda-lhaL8WUEPbQQ _model_server_result.datetime_utc '2024-11-13 02:55:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a0x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":504}' # _entry.id 7A0X # _exptl.entry_id 7A0X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.798 _cell.angle_gamma 90 _cell.entry_id 7A0X _cell.length_a 113.01 _cell.length_b 91.713 _cell.length_c 139.997 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A0X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,N,O,V,W 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 2 1 C,D,P,Q,X,Y 3 1 E,F,R,S,T,U,Z,AA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 O N N ? 7 R N N ? 7 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 C SG CYS 149 C CYS 149 1_555 C SG CYS 205 C CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 D SG CYS 20 D CYS 20 1_555 D SG CYS 83 D CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 130 D CYS 130 1_555 D SG CYS 190 D CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 22 E CYS 22 1_555 E SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 E SG CYS 149 E CYS 149 1_555 E SG CYS 205 E CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 F SG CYS 20 F CYS 20 1_555 F SG CYS 83 F CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 F SG CYS 130 F CYS 130 1_555 F SG CYS 190 F CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 F O THR 105 F THR 105 1_555 U CA CA . F CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc2 U CA CA . F CA 302 1_555 AA O HOH . F HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc3 U CA CA . F CA 302 1_555 AA O HOH . F HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 748 n n O1 HO1 PG4 sing 749 n n C1 C2 PG4 sing 750 n n C1 H11 PG4 sing 751 n n C1 H12 PG4 sing 752 n n C2 O2 PG4 sing 753 n n C2 H21 PG4 sing 754 n n C2 H22 PG4 sing 755 n n O2 C3 PG4 sing 756 n n C3 C4 PG4 sing 757 n n C3 H31 PG4 sing 758 n n C3 H32 PG4 sing 759 n n C4 O3 PG4 sing 760 n n C4 H41 PG4 sing 761 n n C4 H42 PG4 sing 762 n n O3 C5 PG4 sing 763 n n C5 C6 PG4 sing 764 n n C5 H51 PG4 sing 765 n n C5 H52 PG4 sing 766 n n C6 O4 PG4 sing 767 n n C6 H61 PG4 sing 768 n n C6 H62 PG4 sing 769 n n O4 C7 PG4 sing 770 n n C7 C8 PG4 sing 771 n n C7 H71 PG4 sing 772 n n C7 H72 PG4 sing 773 n n C8 O5 PG4 sing 774 n n C8 H81 PG4 sing 775 n n C8 H82 PG4 sing 776 n n O5 HO5 PG4 sing 777 n n # _atom_sites.entry_id 7A0X _atom_sites.fract_transf_matrix[1][1] 0.008849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003185 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CDL A 1 501 1 CDL CDL . H 5 3PH A 1 502 1 3PH 3PH . I 6 PO4 A 1 503 2 PO4 PO4 . J 7 PG4 A 1 504 2 PG4 PG4 . K 5 3PH B 1 501 2 3PH 3PH . L 5 3PH B 1 502 3 3PH 3PH . M 8 3PE B 1 503 1 3PE 3PE . N 6 PO4 B 1 504 1 PO4 PO4 . O 7 PG4 B 1 505 1 PG4 PG4 . P 9 CL C 1 301 1 CL CL . Q 9 CL C 1 302 2 CL CL . R 7 PG4 E 1 301 3 PG4 PG4 . S 7 PG4 E 1 302 4 PG4 PG4 . T 9 CL F 1 301 4 CL CL . U 10 CA F 1 302 1 CA CA . V 11 HOH A 1 601 41 HOH HOH . V 11 HOH A 2 602 97 HOH HOH . V 11 HOH A 3 603 158 HOH HOH . V 11 HOH A 4 604 39 HOH HOH . V 11 HOH A 5 605 159 HOH HOH . V 11 HOH A 6 606 163 HOH HOH . V 11 HOH A 7 607 109 HOH HOH . V 11 HOH A 8 608 166 HOH HOH . W 11 HOH B 1 601 1 HOH HOH . W 11 HOH B 2 602 128 HOH HOH . W 11 HOH B 3 603 162 HOH HOH . X 11 HOH C 1 401 119 HOH HOH . X 11 HOH C 2 402 2 HOH HOH . X 11 HOH C 3 403 45 HOH HOH . X 11 HOH C 4 404 40 HOH HOH . X 11 HOH C 5 405 130 HOH HOH . X 11 HOH C 6 406 66 HOH HOH . X 11 HOH C 7 407 52 HOH HOH . X 11 HOH C 8 408 171 HOH HOH . X 11 HOH C 9 409 7 HOH HOH . X 11 HOH C 10 410 48 HOH HOH . X 11 HOH C 11 411 21 HOH HOH . X 11 HOH C 12 412 5 HOH HOH . X 11 HOH C 13 413 3 HOH HOH . X 11 HOH C 14 414 47 HOH HOH . X 11 HOH C 15 415 122 HOH HOH . X 11 HOH C 16 416 134 HOH HOH . X 11 HOH C 17 417 54 HOH HOH . X 11 HOH C 18 418 125 HOH HOH . X 11 HOH C 19 419 105 HOH HOH . X 11 HOH C 20 420 127 HOH HOH . X 11 HOH C 21 421 14 HOH HOH . X 11 HOH C 22 422 151 HOH HOH . X 11 HOH C 23 423 64 HOH HOH . X 11 HOH C 24 424 79 HOH HOH . X 11 HOH C 25 425 62 HOH HOH . X 11 HOH C 26 426 12 HOH HOH . X 11 HOH C 27 427 142 HOH HOH . X 11 HOH C 28 428 78 HOH HOH . X 11 HOH C 29 429 187 HOH HOH . Y 11 HOH D 1 301 13 HOH HOH . Y 11 HOH D 2 302 11 HOH HOH . Y 11 HOH D 3 303 63 HOH HOH . Y 11 HOH D 4 304 61 HOH HOH . Y 11 HOH D 5 305 25 HOH HOH . Y 11 HOH D 6 306 181 HOH HOH . Y 11 HOH D 7 307 150 HOH HOH . Y 11 HOH D 8 308 124 HOH HOH . Y 11 HOH D 9 309 129 HOH HOH . Y 11 HOH D 10 310 26 HOH HOH . Y 11 HOH D 11 311 169 HOH HOH . Y 11 HOH D 12 312 69 HOH HOH . Y 11 HOH D 13 313 19 HOH HOH . Y 11 HOH D 14 314 56 HOH HOH . Y 11 HOH D 15 315 164 HOH HOH . Y 11 HOH D 16 316 51 HOH HOH . Y 11 HOH D 17 317 165 HOH HOH . Y 11 HOH D 18 318 115 HOH HOH . Y 11 HOH D 19 319 172 HOH HOH . Y 11 HOH D 20 320 176 HOH HOH . Y 11 HOH D 21 321 24 HOH HOH . Y 11 HOH D 22 322 50 HOH HOH . Y 11 HOH D 23 323 95 HOH HOH . Y 11 HOH D 24 324 170 HOH HOH . Y 11 HOH D 25 325 68 HOH HOH . Y 11 HOH D 26 326 55 HOH HOH . Y 11 HOH D 27 327 53 HOH HOH . Y 11 HOH D 28 328 81 HOH HOH . Y 11 HOH D 29 329 173 HOH HOH . Y 11 HOH D 30 330 114 HOH HOH . Y 11 HOH D 31 331 58 HOH HOH . Y 11 HOH D 32 332 96 HOH HOH . Y 11 HOH D 33 333 126 HOH HOH . Y 11 HOH D 34 334 104 HOH HOH . Z 11 HOH E 1 401 157 HOH HOH . Z 11 HOH E 2 402 4 HOH HOH . Z 11 HOH E 3 403 72 HOH HOH . Z 11 HOH E 4 404 143 HOH HOH . Z 11 HOH E 5 405 131 HOH HOH . Z 11 HOH E 6 406 33 HOH HOH . Z 11 HOH E 7 407 6 HOH HOH . Z 11 HOH E 8 408 30 HOH HOH . Z 11 HOH E 9 409 144 HOH HOH . Z 11 HOH E 10 410 71 HOH HOH . Z 11 HOH E 11 411 70 HOH HOH . Z 11 HOH E 12 412 46 HOH HOH . Z 11 HOH E 13 413 34 HOH HOH . Z 11 HOH E 14 414 20 HOH HOH . Z 11 HOH E 15 415 135 HOH HOH . Z 11 HOH E 16 416 84 HOH HOH . Z 11 HOH E 17 417 152 HOH HOH . Z 11 HOH E 18 418 49 HOH HOH . Z 11 HOH E 19 419 15 HOH HOH . Z 11 HOH E 20 420 16 HOH HOH . Z 11 HOH E 21 421 133 HOH HOH . Z 11 HOH E 22 422 100 HOH HOH . Z 11 HOH E 23 423 111 HOH HOH . Z 11 HOH E 24 424 168 HOH HOH . Z 11 HOH E 25 425 188 HOH HOH . Z 11 HOH E 26 426 57 HOH HOH . Z 11 HOH E 27 427 185 HOH HOH . Z 11 HOH E 28 428 138 HOH HOH . Z 11 HOH E 29 429 17 HOH HOH . Z 11 HOH E 30 430 82 HOH HOH . Z 11 HOH E 31 431 77 HOH HOH . Z 11 HOH E 32 432 27 HOH HOH . Z 11 HOH E 33 433 94 HOH HOH . Z 11 HOH E 34 434 38 HOH HOH . Z 11 HOH E 35 435 93 HOH HOH . Z 11 HOH E 36 436 10 HOH HOH . Z 11 HOH E 37 437 29 HOH HOH . Z 11 HOH E 38 438 186 HOH HOH . Z 11 HOH E 39 439 140 HOH HOH . Z 11 HOH E 40 440 86 HOH HOH . Z 11 HOH E 41 441 177 HOH HOH . Z 11 HOH E 42 442 60 HOH HOH . Z 11 HOH E 43 443 123 HOH HOH . Z 11 HOH E 44 444 36 HOH HOH . Z 11 HOH E 45 445 190 HOH HOH . Z 11 HOH E 46 446 98 HOH HOH . Z 11 HOH E 47 447 184 HOH HOH . Z 11 HOH E 48 448 183 HOH HOH . Z 11 HOH E 49 449 83 HOH HOH . Z 11 HOH E 50 450 112 HOH HOH . Z 11 HOH E 51 451 85 HOH HOH . AA 11 HOH F 1 401 136 HOH HOH . AA 11 HOH F 2 402 76 HOH HOH . AA 11 HOH F 3 403 59 HOH HOH . AA 11 HOH F 4 404 149 HOH HOH . AA 11 HOH F 5 405 101 HOH HOH . AA 11 HOH F 6 406 44 HOH HOH . AA 11 HOH F 7 407 91 HOH HOH . AA 11 HOH F 8 408 74 HOH HOH . AA 11 HOH F 9 409 180 HOH HOH . AA 11 HOH F 10 410 179 HOH HOH . AA 11 HOH F 11 411 35 HOH HOH . AA 11 HOH F 12 412 9 HOH HOH . AA 11 HOH F 13 413 42 HOH HOH . AA 11 HOH F 14 414 43 HOH HOH . AA 11 HOH F 15 415 182 HOH HOH . AA 11 HOH F 16 416 189 HOH HOH . AA 11 HOH F 17 417 8 HOH HOH . AA 11 HOH F 18 418 92 HOH HOH . AA 11 HOH F 19 419 146 HOH HOH . AA 11 HOH F 20 420 113 HOH HOH . AA 11 HOH F 21 421 37 HOH HOH . AA 11 HOH F 22 422 89 HOH HOH . AA 11 HOH F 23 423 67 HOH HOH . AA 11 HOH F 24 424 174 HOH HOH . AA 11 HOH F 25 425 178 HOH HOH . AA 11 HOH F 26 426 137 HOH HOH . AA 11 HOH F 27 427 88 HOH HOH . AA 11 HOH F 28 428 121 HOH HOH . AA 11 HOH F 29 429 23 HOH HOH . AA 11 HOH F 30 430 31 HOH HOH . AA 11 HOH F 31 431 145 HOH HOH . AA 11 HOH F 32 432 103 HOH HOH . AA 11 HOH F 33 433 175 HOH HOH . AA 11 HOH F 34 434 73 HOH HOH . AA 11 HOH F 35 435 110 HOH HOH . AA 11 HOH F 36 436 65 HOH HOH . AA 11 HOH F 37 437 148 HOH HOH . AA 11 HOH F 38 438 167 HOH HOH . AA 11 HOH F 39 439 139 HOH HOH . AA 11 HOH F 40 440 102 HOH HOH . AA 11 HOH F 41 441 22 HOH HOH . AA 11 HOH F 42 442 32 HOH HOH . AA 11 HOH F 43 443 156 HOH HOH . AA 11 HOH F 44 444 28 HOH HOH . AA 11 HOH F 45 445 147 HOH HOH . AA 11 HOH F 46 446 87 HOH HOH . AA 11 HOH F 47 447 132 HOH HOH . AA 11 HOH F 48 448 161 HOH HOH . AA 11 HOH F 49 449 18 HOH HOH . AA 11 HOH F 50 450 117 HOH HOH . AA 11 HOH F 51 451 160 HOH HOH . AA 11 HOH F 52 452 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . J 7 25.899 11.07 57.802 1 53.78 ? O1 PG4 504 A 1 HETATM 2 C C1 PG4 . . . J 7 26.709 11.105 56.621 1 80.44 ? C1 PG4 504 A 1 HETATM 3 C C2 PG4 . . . J 7 25.85 10.76 55.41 1 82.53 ? C2 PG4 504 A 1 HETATM 4 O O2 PG4 . . . J 7 24.737 11.649 55.356 1 74.58 ? O2 PG4 504 A 1 HETATM 5 C C3 PG4 . . . J 7 23.931 11.423 54.201 1 58.98 ? C3 PG4 504 A 1 HETATM 6 C C4 PG4 . . . J 7 22.762 12.4 54.202 1 54.55 ? C4 PG4 504 A 1 HETATM 7 O O3 PG4 . . . J 7 22.201 12.459 52.893 1 60.92 ? O3 PG4 504 A 1 HETATM 8 C C5 PG4 . . . J 7 21.248 13.512 52.765 1 49.67 ? C5 PG4 504 A 1 HETATM 9 C C6 PG4 . . . J 7 21.002 13.787 51.286 1 46.91 ? C6 PG4 504 A 1 HETATM 10 O O4 PG4 . . . J 7 20.46 12.626 50.659 1 44.09 ? O4 PG4 504 A 1 HETATM 11 C C7 PG4 . . . J 7 20.395 12.778 49.242 1 54.67 ? C7 PG4 504 A 1 HETATM 12 C C8 PG4 . . . J 7 19.694 11.573 48.626 1 56.52 ? C8 PG4 504 A 1 HETATM 13 O O5 PG4 . . . J 7 18.318 11.567 49.022 1 46.87 ? O5 PG4 504 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #