data_7A1J # _model_server_result.job_id Al3wENKEClofaOlw3C_ZQQ _model_server_result.datetime_utc '2024-11-15 16:21:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 7A1J # _exptl.entry_id 7A1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.274 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(3-phenylpropyl)-2-oxoglutarate _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7A1J _cell.length_a 86.194 _cell.length_b 86.194 _cell.length_c 148.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 86.194 86.194 74.37 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc2 A OD2 ASP 201 A ASP 201 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc3 A NE2 HIS 279 A HIS 279 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc4 B ZN ZN . A ZN 401 1_555 H O01 QVN . A QVN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc5 B ZN ZN . A ZN 401 1_555 H O02 QVN . A QVN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc6 B ZN ZN . A ZN 401 1_555 I O HOH . A HOH 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? # _chem_comp.formula 'C14 H16 O5' _chem_comp.formula_weight 264.274 _chem_comp.id QVN _chem_comp.mon_nstd_flag . _chem_comp.name 3-(3-phenylpropyl)-2-oxoglutarate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(4~{S})-2-oxidanylidene-4-(3-phenylpropyl)pentanedioic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C07 QVN doub 277 n n O02 C07 QVN sing 278 n n C07 C01 QVN sing 279 n n O05 C08 QVN doub 280 n n C01 C02 QVN sing 281 n n C01 O01 QVN doub 282 n n C02 C03 QVN sing 283 n n C08 C03 QVN sing 284 n n C08 O04 QVN sing 285 n n C03 C04 QVN sing 286 n n C04 C05 QVN sing 287 n n C05 C06 QVN sing 288 n n C06 C09 QVN sing 289 n n C09 C10 QVN doub 290 n y C09 C14 QVN sing 291 n y C10 C11 QVN sing 292 n y C14 C13 QVN doub 293 n y C11 C12 QVN doub 294 n y C13 C12 QVN sing 295 n y C10 H12 QVN sing 296 n n C13 H15 QVN sing 297 n n C02 H02 QVN sing 298 n n C02 H01 QVN sing 299 n n C03 H03 QVN sing 300 n n C04 H04 QVN sing 301 n n C04 H05 QVN sing 302 n n C05 H06 QVN sing 303 n n C05 H07 QVN sing 304 n n C06 H08 QVN sing 305 n n C06 H09 QVN sing 306 n n C11 H13 QVN sing 307 n n C12 H14 QVN sing 308 n n C14 H16 QVN sing 309 n n O02 H1 QVN sing 310 n n O04 H2 QVN sing 311 n n # _atom_sites.entry_id 7A1J _atom_sites.fract_transf_matrix[1][1] 0.011602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 500 ZN ZN . C 3 SO4 A 1 402 502 SO4 SO4 . D 3 SO4 A 1 403 503 SO4 SO4 . E 3 SO4 A 1 404 504 SO4 SO4 . F 3 SO4 A 1 405 506 SO4 SO4 . G 3 SO4 A 1 406 507 SO4 SO4 . H 4 QVN A 1 407 601 QVN LIG . I 5 HOH A 1 501 104 HOH HOH . I 5 HOH A 2 502 23 HOH HOH . I 5 HOH A 3 503 6 HOH HOH . I 5 HOH A 4 504 329 HOH HOH . I 5 HOH A 5 505 132 HOH HOH . I 5 HOH A 6 506 76 HOH HOH . I 5 HOH A 7 507 357 HOH HOH . I 5 HOH A 8 508 113 HOH HOH . I 5 HOH A 9 509 16 HOH HOH . I 5 HOH A 10 510 78 HOH HOH . I 5 HOH A 11 511 7 HOH HOH . I 5 HOH A 12 512 51 HOH HOH . I 5 HOH A 13 513 85 HOH HOH . I 5 HOH A 14 514 35 HOH HOH . I 5 HOH A 15 515 1 HOH HOH . I 5 HOH A 16 516 205 HOH HOH . I 5 HOH A 17 517 88 HOH HOH . I 5 HOH A 18 518 28 HOH HOH . I 5 HOH A 19 519 146 HOH HOH . I 5 HOH A 20 520 8 HOH HOH . I 5 HOH A 21 521 20 HOH HOH . I 5 HOH A 22 522 109 HOH HOH . I 5 HOH A 23 523 219 HOH HOH . I 5 HOH A 24 524 3 HOH HOH . I 5 HOH A 25 525 335 HOH HOH . I 5 HOH A 26 526 341 HOH HOH . I 5 HOH A 27 527 22 HOH HOH . I 5 HOH A 28 528 99 HOH HOH . I 5 HOH A 29 529 222 HOH HOH . I 5 HOH A 30 530 220 HOH HOH . I 5 HOH A 31 531 2 HOH HOH . I 5 HOH A 32 532 19 HOH HOH . I 5 HOH A 33 533 17 HOH HOH . I 5 HOH A 34 534 62 HOH HOH . I 5 HOH A 35 535 64 HOH HOH . I 5 HOH A 36 536 12 HOH HOH . I 5 HOH A 37 537 356 HOH HOH . I 5 HOH A 38 538 84 HOH HOH . I 5 HOH A 39 539 70 HOH HOH . I 5 HOH A 40 540 195 HOH HOH . I 5 HOH A 41 541 77 HOH HOH . I 5 HOH A 42 542 56 HOH HOH . I 5 HOH A 43 543 5 HOH HOH . I 5 HOH A 44 544 111 HOH HOH . I 5 HOH A 45 545 68 HOH HOH . I 5 HOH A 46 546 100 HOH HOH . I 5 HOH A 47 547 4 HOH HOH . I 5 HOH A 48 548 10 HOH HOH . I 5 HOH A 49 549 105 HOH HOH . I 5 HOH A 50 550 211 HOH HOH . I 5 HOH A 51 551 86 HOH HOH . I 5 HOH A 52 552 27 HOH HOH . I 5 HOH A 53 553 122 HOH HOH . I 5 HOH A 54 554 37 HOH HOH . I 5 HOH A 55 555 13 HOH HOH . I 5 HOH A 56 556 92 HOH HOH . I 5 HOH A 57 557 153 HOH HOH . I 5 HOH A 58 558 258 HOH HOH . I 5 HOH A 59 559 137 HOH HOH . I 5 HOH A 60 560 361 HOH HOH . I 5 HOH A 61 561 67 HOH HOH . I 5 HOH A 62 562 101 HOH HOH . I 5 HOH A 63 563 14 HOH HOH . I 5 HOH A 64 564 24 HOH HOH . I 5 HOH A 65 565 82 HOH HOH . I 5 HOH A 66 566 74 HOH HOH . I 5 HOH A 67 567 287 HOH HOH . I 5 HOH A 68 568 9 HOH HOH . I 5 HOH A 69 569 190 HOH HOH . I 5 HOH A 70 570 36 HOH HOH . I 5 HOH A 71 571 174 HOH HOH . I 5 HOH A 72 572 29 HOH HOH . I 5 HOH A 73 573 165 HOH HOH . I 5 HOH A 74 574 343 HOH HOH . I 5 HOH A 75 575 363 HOH HOH . I 5 HOH A 76 576 87 HOH HOH . I 5 HOH A 77 577 18 HOH HOH . I 5 HOH A 78 578 317 HOH HOH . I 5 HOH A 79 579 21 HOH HOH . I 5 HOH A 80 580 342 HOH HOH . I 5 HOH A 81 581 112 HOH HOH . I 5 HOH A 82 582 359 HOH HOH . I 5 HOH A 83 583 65 HOH HOH . I 5 HOH A 84 584 143 HOH HOH . I 5 HOH A 85 585 63 HOH HOH . I 5 HOH A 86 586 30 HOH HOH . I 5 HOH A 87 587 117 HOH HOH . I 5 HOH A 88 588 201 HOH HOH . I 5 HOH A 89 589 25 HOH HOH . I 5 HOH A 90 590 79 HOH HOH . I 5 HOH A 91 591 15 HOH HOH . I 5 HOH A 92 592 176 HOH HOH . I 5 HOH A 93 593 147 HOH HOH . I 5 HOH A 94 594 358 HOH HOH . I 5 HOH A 95 595 96 HOH HOH . I 5 HOH A 96 596 106 HOH HOH . I 5 HOH A 97 597 39 HOH HOH . I 5 HOH A 98 598 212 HOH HOH . I 5 HOH A 99 599 282 HOH HOH . I 5 HOH A 100 600 107 HOH HOH . I 5 HOH A 101 601 59 HOH HOH . I 5 HOH A 102 602 148 HOH HOH . I 5 HOH A 103 603 362 HOH HOH . I 5 HOH A 104 604 196 HOH HOH . I 5 HOH A 105 605 167 HOH HOH . I 5 HOH A 106 606 178 HOH HOH . I 5 HOH A 107 607 43 HOH HOH . I 5 HOH A 108 608 349 HOH HOH . I 5 HOH A 109 609 346 HOH HOH . I 5 HOH A 110 610 352 HOH HOH . I 5 HOH A 111 611 340 HOH HOH . I 5 HOH A 112 612 223 HOH HOH . I 5 HOH A 113 613 351 HOH HOH . I 5 HOH A 114 614 141 HOH HOH . I 5 HOH A 115 615 108 HOH HOH . I 5 HOH A 116 616 166 HOH HOH . I 5 HOH A 117 617 115 HOH HOH . I 5 HOH A 118 618 168 HOH HOH . I 5 HOH A 119 619 336 HOH HOH . I 5 HOH A 120 620 353 HOH HOH . I 5 HOH A 121 621 150 HOH HOH . I 5 HOH A 122 622 136 HOH HOH . I 5 HOH A 123 623 323 HOH HOH . I 5 HOH A 124 624 339 HOH HOH . I 5 HOH A 125 625 38 HOH HOH . I 5 HOH A 126 626 355 HOH HOH . I 5 HOH A 127 627 57 HOH HOH . I 5 HOH A 128 628 184 HOH HOH . I 5 HOH A 129 629 127 HOH HOH . I 5 HOH A 130 630 98 HOH HOH . I 5 HOH A 131 631 180 HOH HOH . I 5 HOH A 132 632 97 HOH HOH . I 5 HOH A 133 633 72 HOH HOH . I 5 HOH A 134 634 345 HOH HOH . I 5 HOH A 135 635 210 HOH HOH . I 5 HOH A 136 636 259 HOH HOH . I 5 HOH A 137 637 173 HOH HOH . I 5 HOH A 138 638 207 HOH HOH . I 5 HOH A 139 639 350 HOH HOH . I 5 HOH A 140 640 144 HOH HOH . I 5 HOH A 141 641 194 HOH HOH . I 5 HOH A 142 642 48 HOH HOH . I 5 HOH A 143 643 129 HOH HOH . I 5 HOH A 144 644 102 HOH HOH . I 5 HOH A 145 645 293 HOH HOH . I 5 HOH A 146 646 182 HOH HOH . I 5 HOH A 147 647 286 HOH HOH . I 5 HOH A 148 648 41 HOH HOH . I 5 HOH A 149 649 185 HOH HOH . I 5 HOH A 150 650 360 HOH HOH . I 5 HOH A 151 651 318 HOH HOH . I 5 HOH A 152 652 197 HOH HOH . I 5 HOH A 153 653 40 HOH HOH . I 5 HOH A 154 654 152 HOH HOH . I 5 HOH A 155 655 80 HOH HOH . I 5 HOH A 156 656 66 HOH HOH . I 5 HOH A 157 657 149 HOH HOH . I 5 HOH A 158 658 347 HOH HOH . I 5 HOH A 159 659 231 HOH HOH . I 5 HOH A 160 660 116 HOH HOH . I 5 HOH A 161 661 45 HOH HOH . I 5 HOH A 162 662 348 HOH HOH . I 5 HOH A 163 663 50 HOH HOH . I 5 HOH A 164 664 337 HOH HOH . I 5 HOH A 165 665 124 HOH HOH . I 5 HOH A 166 666 103 HOH HOH . I 5 HOH A 167 667 313 HOH HOH . I 5 HOH A 168 668 47 HOH HOH . I 5 HOH A 169 669 354 HOH HOH . I 5 HOH A 170 670 186 HOH HOH . I 5 HOH A 171 671 163 HOH HOH . I 5 HOH A 172 672 172 HOH HOH . I 5 HOH A 173 673 233 HOH HOH . I 5 HOH A 174 674 344 HOH HOH . I 5 HOH A 175 675 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 QVN . . . H 4 21.75 27.762 33.325 1 67.45 ? C10 QVN 407 A 1 HETATM 2 C C13 QVN . . . H 4 23.93 26.045 33.84 1 65.71 ? C13 QVN 407 A 1 HETATM 3 C C01 QVN . . . H 4 20.943 26.061 28.227 1 66.95 ? C01 QVN 407 A 1 HETATM 4 C C02 QVN . . . H 4 19.565 25.392 28.291 1 64.04 ? C02 QVN 407 A 1 HETATM 5 C C03 QVN . . . H 4 18.661 25.958 29.32 1 62.49 ? C03 QVN 407 A 1 HETATM 6 C C04 QVN . . . H 4 18.853 25.459 30.744 1 65.79 ? C04 QVN 407 A 1 HETATM 7 C C05 QVN . . . H 4 20.21 25.875 31.316 1 67.2 ? C05 QVN 407 A 1 HETATM 8 C C06 QVN . . . H 4 20.241 25.802 32.849 1 67.18 ? C06 QVN 407 A 1 HETATM 9 C C07 QVN . . . H 4 22.005 25.342 27.777 1 64.59 ? C07 QVN 407 A 1 HETATM 10 C C08 QVN . . . H 4 17.216 25.623 28.906 1 69.36 ? C08 QVN 407 A 1 HETATM 11 C C09 QVN . . . H 4 21.577 26.352 33.242 1 65.95 ? C09 QVN 407 A 1 HETATM 12 C C11 QVN . . . H 4 23.02 28.308 33.65 1 65.82 ? C11 QVN 407 A 1 HETATM 13 C C12 QVN . . . H 4 24.1 27.439 33.894 1 66.84 ? C12 QVN 407 A 1 HETATM 14 C C14 QVN . . . H 4 22.65 25.498 33.509 1 60.49 ? C14 QVN 407 A 1 HETATM 15 O O01 QVN . . . H 4 20.963 27.259 28.577 1 60.09 ? O01 QVN 407 A 1 HETATM 16 O O02 QVN . . . H 4 23.145 25.701 27.746 1 59.05 ? O02 QVN 407 A 1 HETATM 17 O O03 QVN . . . H 4 21.944 24.091 27.208 1 67.41 -1 O03 QVN 407 A 1 HETATM 18 O O04 QVN . . . H 4 16.246 25.989 29.551 1 61.16 ? O04 QVN 407 A 1 HETATM 19 O O05 QVN . . . H 4 17.029 24.918 27.782 1 64.76 -1 O05 QVN 407 A 1 HETATM 20 H H12 QVN . . . H 4 20.91 28.42 33.14 1 80.95 ? H12 QVN 407 A 1 HETATM 21 H H15 QVN . . . H 4 24.764 25.387 34.048 1 78.86 ? H15 QVN 407 A 1 HETATM 22 H H02 QVN . . . H 4 19.708 24.34 28.507 1 76.86 ? H02 QVN 407 A 1 HETATM 23 H H01 QVN . . . H 4 19.089 25.5 27.324 1 76.86 ? H01 QVN 407 A 1 HETATM 24 H H03 QVN . . . H 4 18.89 27.016 29.35 1 75 ? H03 QVN 407 A 1 HETATM 25 H H04 QVN . . . H 4 18.788 24.378 30.748 1 78.96 ? H04 QVN 407 A 1 HETATM 26 H H05 QVN . . . H 4 18.069 25.87 31.368 1 78.96 ? H05 QVN 407 A 1 HETATM 27 H H06 QVN . . . H 4 20.419 26.893 31.011 1 80.65 ? H06 QVN 407 A 1 HETATM 28 H H07 QVN . . . H 4 20.972 25.216 30.92 1 80.65 ? H07 QVN 407 A 1 HETATM 29 H H08 QVN . . . H 4 20.14 24.776 33.182 1 80.63 ? H08 QVN 407 A 1 HETATM 30 H H09 QVN . . . H 4 19.444 26.399 33.273 1 80.63 ? H09 QVN 407 A 1 HETATM 31 H H13 QVN . . . H 4 23.156 29.381 33.71 1 79 ? H13 QVN 407 A 1 HETATM 32 H H14 QVN . . . H 4 25.075 27.85 34.126 1 80.22 ? H14 QVN 407 A 1 HETATM 33 H H16 QVN . . . H 4 22.513 24.425 33.466 1 72.61 ? H16 QVN 407 A 1 # _model_server_stats.io_time_ms 147 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #