data_7A1K
#
_model_server_result.job_id            ITjfj7T7tt10Ae5lOG25JQ 
_model_server_result.datetime_utc      '2024-11-15 15:24:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7a1k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    7A1K 
#
_exptl.entry_id    7A1K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              352.381 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-((9,9-dimethyl-9H-fluoren-2-yl)methyl)-2-oxoglutarate 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7A1K 
_cell.length_a            86.181 
_cell.length_b            86.181 
_cell.length_c            148.898 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7A1K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 86.181 86.181 74.449 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc2 A OD2 ASP 201 A ASP 201 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc3 A NE2 HIS 279 A HIS 279 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc4 B ZN ZN . A ZN 401 1_555 C O01 QVZ . A QVZ 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc5 B ZN ZN . A ZN 401 1_555 C O02 QVZ . A QVZ 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
metalc ? metalc6 B ZN ZN . A ZN 401 1_555 H O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
#
_chem_comp.formula           'C21 H20 O5' 
_chem_comp.formula_weight    352.381 
_chem_comp.id                QVZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-((9,9-dimethyl-9H-fluoren-2-yl)methyl)-2-oxoglutarate 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(3~{S})-3-[(9,9-dimethylfluoren-2-yl)methyl]-2-oxidanylidene-pentanedioic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O03 C20 QVZ doub 277 n n 
O04 C21 QVZ doub 278 n n 
C20 O02 QVZ sing 279 n n 
C20 C01 QVZ sing 280 n n 
C02 C01 QVZ sing 281 n n 
C02 C04 QVZ sing 282 n n 
C02 C03 QVZ sing 283 n n 
C21 C04 QVZ sing 284 n n 
C21 O05 QVZ sing 285 n n 
C01 O01 QVZ doub 286 n n 
C03 C05 QVZ sing 287 n n 
C05 C06 QVZ doub 288 n y 
C05 C10 QVZ sing 289 n y 
C06 C07 QVZ sing 290 n y 
C10 C09 QVZ doub 291 n y 
C07 C08 QVZ doub 292 n y 
C09 C08 QVZ sing 293 n y 
C09 C13 QVZ sing 294 n n 
C08 C11 QVZ sing 295 n n 
C18 C13 QVZ sing 296 n n 
C13 C19 QVZ sing 297 n n 
C13 C12 QVZ sing 298 n n 
C11 C12 QVZ doub 299 n y 
C11 C14 QVZ sing 300 n y 
C12 C17 QVZ sing 301 n y 
C14 C15 QVZ doub 302 n y 
C17 C16 QVZ doub 303 n y 
C15 C16 QVZ sing 304 n y 
C10 H08 QVZ sing 305 n n 
C15 H10 QVZ sing 306 n n 
C17 H12 QVZ sing 307 n n 
C02 H01 QVZ sing 308 n n 
C03 H02 QVZ sing 309 n n 
C03 H03 QVZ sing 310 n n 
C04 H04 QVZ sing 311 n n 
C04 H05 QVZ sing 312 n n 
C06 H06 QVZ sing 313 n n 
C07 H07 QVZ sing 314 n n 
C14 H09 QVZ sing 315 n n 
C16 H11 QVZ sing 316 n n 
C18 H14 QVZ sing 317 n n 
C18 H13 QVZ sing 318 n n 
C18 H15 QVZ sing 319 n n 
C19 H18 QVZ sing 320 n n 
C19 H16 QVZ sing 321 n n 
C19 H17 QVZ sing 322 n n 
O02 H1 QVZ sing 323 n n 
O05 H2 QVZ sing 324 n n 
#
_atom_sites.entry_id                     7A1K 
_atom_sites.fract_transf_matrix[1][1]    0.011603 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011603 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006716 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 500 ZN ZN . 
C 3 QVZ A 1 402 501 QVZ LIG . 
D 4 SO4 A 1 403 502 SO4 SO4 . 
E 4 SO4 A 1 404 503 SO4 SO4 . 
F 4 SO4 A 1 405 504 SO4 SO4 . 
G 4 SO4 A 1 406 508 SO4 SO4 . 
H 5 HOH A 1 501 10 HOH HOH . 
H 5 HOH A 2 502 53 HOH HOH . 
H 5 HOH A 3 503 23 HOH HOH . 
H 5 HOH A 4 504 20 HOH HOH . 
H 5 HOH A 5 505 61 HOH HOH . 
H 5 HOH A 6 506 15 HOH HOH . 
H 5 HOH A 7 507 1 HOH HOH . 
H 5 HOH A 8 508 7 HOH HOH . 
H 5 HOH A 9 509 4 HOH HOH . 
H 5 HOH A 10 510 5 HOH HOH . 
H 5 HOH A 11 511 3 HOH HOH . 
H 5 HOH A 12 512 2 HOH HOH . 
H 5 HOH A 13 513 9 HOH HOH . 
H 5 HOH A 14 514 8 HOH HOH . 
H 5 HOH A 15 515 54 HOH HOH . 
H 5 HOH A 16 516 31 HOH HOH . 
H 5 HOH A 17 517 11 HOH HOH . 
H 5 HOH A 18 518 22 HOH HOH . 
H 5 HOH A 19 519 17 HOH HOH . 
H 5 HOH A 20 520 18 HOH HOH . 
H 5 HOH A 21 521 26 HOH HOH . 
H 5 HOH A 22 522 57 HOH HOH . 
H 5 HOH A 23 523 55 HOH HOH . 
H 5 HOH A 24 524 19 HOH HOH . 
H 5 HOH A 25 525 24 HOH HOH . 
H 5 HOH A 26 526 13 HOH HOH . 
H 5 HOH A 27 527 16 HOH HOH . 
H 5 HOH A 28 528 21 HOH HOH . 
H 5 HOH A 29 529 63 HOH HOH . 
H 5 HOH A 30 530 27 HOH HOH . 
H 5 HOH A 31 531 25 HOH HOH . 
H 5 HOH A 32 532 28 HOH HOH . 
H 5 HOH A 33 533 12 HOH HOH . 
H 5 HOH A 34 534 67 HOH HOH . 
H 5 HOH A 35 535 32 HOH HOH . 
H 5 HOH A 36 536 35 HOH HOH . 
H 5 HOH A 37 537 49 HOH HOH . 
H 5 HOH A 38 538 48 HOH HOH . 
H 5 HOH A 39 539 38 HOH HOH . 
H 5 HOH A 40 540 34 HOH HOH . 
H 5 HOH A 41 541 60 HOH HOH . 
H 5 HOH A 42 542 39 HOH HOH . 
H 5 HOH A 43 543 40 HOH HOH . 
H 5 HOH A 44 544 37 HOH HOH . 
H 5 HOH A 45 545 62 HOH HOH . 
H 5 HOH A 46 546 64 HOH HOH . 
H 5 HOH A 47 547 47 HOH HOH . 
H 5 HOH A 48 548 33 HOH HOH . 
H 5 HOH A 49 549 41 HOH HOH . 
H 5 HOH A 50 550 66 HOH HOH . 
H 5 HOH A 51 551 45 HOH HOH . 
H 5 HOH A 52 552 52 HOH HOH . 
H 5 HOH A 53 553 50 HOH HOH . 
H 5 HOH A 54 554 36 HOH HOH . 
H 5 HOH A 55 555 46 HOH HOH . 
H 5 HOH A 56 556 58 HOH HOH . 
H 5 HOH A 57 557 59 HOH HOH . 
H 5 HOH A 58 558 56 HOH HOH . 
H 5 HOH A 59 559 44 HOH HOH . 
H 5 HOH A 60 560 51 HOH HOH . 
H 5 HOH A 61 561 42 HOH HOH . 
H 5 HOH A 62 562 43 HOH HOH . 
H 5 HOH A 63 563 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 QVZ . . . C 3 19.155 24.542 32.011 1 133.81 ? C10 QVZ 402 A 1 
HETATM 2 C C13 QVZ . . . C 3 18.316 25.041 34.419 1 191.78 ? C13 QVZ 402 A 1 
HETATM 3 C C15 QVZ . . . C 3 21.134 25.695 37.55 1 221 ? C15 QVZ 402 A 1 
HETATM 4 C C17 QVZ . . . C 3 18.802 25.579 36.905 1 202.48 ? C17 QVZ 402 A 1 
HETATM 5 C C20 QVZ . . . C 3 22.295 25.356 28.272 1 66.6 ? C20 QVZ 402 A 1 
HETATM 6 C C21 QVZ . . . C 3 17.386 25.351 28.788 1 60.94 ? C21 QVZ 402 A 1 
HETATM 7 C C01 QVZ . . . C 3 21.182 25.882 28.818 1 75.17 ? C01 QVZ 402 A 1 
HETATM 8 C C02 QVZ . . . C 3 19.887 25.107 28.762 1 72.86 ? C02 QVZ 402 A 1 
HETATM 9 C C03 QVZ . . . C 3 19.978 24.025 29.702 1 83.11 ? C03 QVZ 402 A 1 
HETATM 10 C C04 QVZ . . . C 3 18.719 25.995 29.13 1 59.69 ? C04 QVZ 402 A 1 
HETATM 11 C C05 QVZ . . . C 3 20.231 24.353 31.15 1 110.11 ? C05 QVZ 402 A 1 
HETATM 12 C C06 QVZ . . . C 3 21.521 24.445 31.66 1 131.67 ? C06 QVZ 402 A 1 
HETATM 13 C C07 QVZ . . . C 3 21.729 24.731 33.022 1 146.24 ? C07 QVZ 402 A 1 
HETATM 14 C C08 QVZ . . . C 3 20.63 24.924 33.886 1 159.65 ? C08 QVZ 402 A 1 
HETATM 15 C C09 QVZ . . . C 3 19.369 24.822 33.36 1 157.68 ? C09 QVZ 402 A 1 
HETATM 16 C C11 QVZ . . . C 3 20.541 25.212 35.251 1 185.48 ? C11 QVZ 402 A 1 
HETATM 17 C C12 QVZ . . . C 3 19.202 25.3 35.606 1 189.79 ? C12 QVZ 402 A 1 
HETATM 18 C C14 QVZ . . . C 3 21.528 25.413 36.239 1 205.67 ? C14 QVZ 402 A 1 
HETATM 19 C C16 QVZ . . . C 3 19.777 25.777 37.88 1 218.27 ? C16 QVZ 402 A 1 
HETATM 20 C C18 QVZ . . . C 3 17.4 26.131 34.098 1 204.72 ? C18 QVZ 402 A 1 
HETATM 21 C C19 QVZ . . . C 3 17.359 23.792 34.636 1 211.04 ? C19 QVZ 402 A 1 
HETATM 22 O O01 QVZ . . . C 3 21.224 26.974 29.35 1 75.08 ? O01 QVZ 402 A 1 
HETATM 23 O O02 QVZ . . . C 3 23.364 25.893 28.38 1 89.52 ? O02 QVZ 402 A 1 
HETATM 24 O O03 QVZ . . . C 3 22.21 24.219 27.575 1 80.85 -1 O03 QVZ 402 A 1 
HETATM 25 O O04 QVZ . . . C 3 17.252 24.685 27.789 1 57.32 ? O04 QVZ 402 A 1 
HETATM 26 O O05 QVZ . . . C 3 16.326 25.555 29.565 1 62.77 -1 O05 QVZ 402 A 1 
HETATM 27 H H08 QVZ . . . C 3 18.412 25.203 31.581 1 160.62 ? H08 QVZ 402 A 1 
HETATM 28 H H10 QVZ . . . C 3 21.884 25.85 38.315 1 265.24 ? H10 QVZ 402 A 1 
HETATM 29 H H12 QVZ . . . C 3 17.75 25.642 37.157 1 243.02 ? H12 QVZ 402 A 1 
HETATM 30 H H01 QVZ . . . C 3 19.727 24.735 27.758 1 87.48 ? H01 QVZ 402 A 1 
HETATM 31 H H02 QVZ . . . C 3 20.786 23.383 29.374 1 99.78 ? H02 QVZ 402 A 1 
HETATM 32 H H03 QVZ . . . C 3 19.043 23.481 29.656 1 99.78 ? H03 QVZ 402 A 1 
HETATM 33 H H04 QVZ . . . C 3 18.805 26.929 28.588 1 71.67 ? H04 QVZ 402 A 1 
HETATM 34 H H05 QVZ . . . C 3 18.75 26.191 30.194 1 71.67 ? H05 QVZ 402 A 1 
HETATM 35 H H06 QVZ . . . C 3 22.182 25.009 31.013 1 158.06 ? H06 QVZ 402 A 1 
HETATM 36 H H07 QVZ . . . C 3 22.479 24.083 33.461 1 175.53 ? H07 QVZ 402 A 1 
HETATM 37 H H09 QVZ . . . C 3 22.579 25.35 35.985 1 246.86 ? H09 QVZ 402 A 1 
HETATM 38 H H11 QVZ . . . C 3 19.483 25.995 38.9 1 261.97 ? H11 QVZ 402 A 1 
HETATM 39 H H14 QVZ . . . C 3 16.753 25.83 33.284 1 245.72 ? H14 QVZ 402 A 1 
HETATM 40 H H13 QVZ . . . C 3 17.967 27.005 33.804 1 245.72 ? H13 QVZ 402 A 1 
HETATM 41 H H15 QVZ . . . C 3 16.8 26.366 34.968 1 245.72 ? H15 QVZ 402 A 1 
HETATM 42 H H18 QVZ . . . C 3 17.268 23.242 33.707 1 253.29 ? H18 QVZ 402 A 1 
HETATM 43 H H16 QVZ . . . C 3 16.381 24.137 34.948 1 253.29 ? H16 QVZ 402 A 1 
HETATM 44 H H17 QVZ . . . C 3 17.775 23.146 35.399 1 253.29 ? H17 QVZ 402 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           40 
_model_server_stats.create_model_time_ms    63 
_model_server_stats.query_time_ms           423 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           44 
#