data_7A1L
#
_model_server_result.job_id            nQTSfifn5fqXn5pmgEAo3A 
_model_server_result.datetime_utc      '2024-11-15 18:18:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7a1l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7A1L 
#
_exptl.entry_id    7A1L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              160.125 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3~{S})-3-methyl-2-oxidanylidene-pentanedioic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7A1L 
_cell.length_a            86.55 
_cell.length_b            86.55 
_cell.length_c            148.091 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7A1L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc2 A OD2 ASP 201 A ASP 201 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc3 A NE2 HIS 279 A HIS 279 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc4 B O01 ROQ . A ROQ 401 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc5 B O02 ROQ . A ROQ 401 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
#
_chem_comp.formula           'C6 H8 O5' 
_chem_comp.formula_weight    160.125 
_chem_comp.id                ROQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3~{S})-3-methyl-2-oxidanylidene-pentanedioic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O03 C05 ROQ doub 277 n n 
O05 C06 ROQ doub 278 n n 
O02 C05 ROQ sing 279 n n 
C05 C01 ROQ sing 280 n n 
C06 C03 ROQ sing 281 n n 
C06 O04 ROQ sing 282 n n 
C03 C02 ROQ sing 283 n n 
C01 C02 ROQ sing 284 n n 
C01 O01 ROQ doub 285 n n 
C02 C04 ROQ sing 286 n n 
C02 H01 ROQ sing 287 n n 
C03 H02 ROQ sing 288 n n 
C03 H03 ROQ sing 289 n n 
C04 H04 ROQ sing 290 n n 
C04 H05 ROQ sing 291 n n 
C04 H06 ROQ sing 292 n n 
O02 H1 ROQ sing 293 n n 
O04 H2 ROQ sing 294 n n 
#
_atom_sites.entry_id                     7A1L 
_atom_sites.fract_transf_matrix[1][1]    0.011554 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011554 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006753 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ROQ A 1 401 401 ROQ LIG . 
C 3 ZN A 1 402 501 ZN ZN . 
D 4 SO4 A 1 403 502 SO4 SO4 . 
E 4 SO4 A 1 404 503 SO4 SO4 . 
F 4 SO4 A 1 405 504 SO4 SO4 . 
G 4 SO4 A 1 406 506 SO4 SO4 . 
H 5 HOH A 1 501 16 HOH HOH . 
H 5 HOH A 2 502 15 HOH HOH . 
H 5 HOH A 3 503 8 HOH HOH . 
H 5 HOH A 4 504 30 HOH HOH . 
H 5 HOH A 5 505 10 HOH HOH . 
H 5 HOH A 6 506 24 HOH HOH . 
H 5 HOH A 7 507 1 HOH HOH . 
H 5 HOH A 8 508 2 HOH HOH . 
H 5 HOH A 9 509 29 HOH HOH . 
H 5 HOH A 10 510 7 HOH HOH . 
H 5 HOH A 11 511 5 HOH HOH . 
H 5 HOH A 12 512 3 HOH HOH . 
H 5 HOH A 13 513 19 HOH HOH . 
H 5 HOH A 14 514 17 HOH HOH . 
H 5 HOH A 15 515 11 HOH HOH . 
H 5 HOH A 16 516 6 HOH HOH . 
H 5 HOH A 17 517 26 HOH HOH . 
H 5 HOH A 18 518 21 HOH HOH . 
H 5 HOH A 19 519 18 HOH HOH . 
H 5 HOH A 20 520 35 HOH HOH . 
H 5 HOH A 21 521 56 HOH HOH . 
H 5 HOH A 22 522 13 HOH HOH . 
H 5 HOH A 23 523 27 HOH HOH . 
H 5 HOH A 24 524 23 HOH HOH . 
H 5 HOH A 25 525 4 HOH HOH . 
H 5 HOH A 26 526 33 HOH HOH . 
H 5 HOH A 27 527 55 HOH HOH . 
H 5 HOH A 28 528 25 HOH HOH . 
H 5 HOH A 29 529 9 HOH HOH . 
H 5 HOH A 30 530 31 HOH HOH . 
H 5 HOH A 31 531 20 HOH HOH . 
H 5 HOH A 32 532 48 HOH HOH . 
H 5 HOH A 33 533 22 HOH HOH . 
H 5 HOH A 34 534 49 HOH HOH . 
H 5 HOH A 35 535 32 HOH HOH . 
H 5 HOH A 36 536 34 HOH HOH . 
H 5 HOH A 37 537 46 HOH HOH . 
H 5 HOH A 38 538 39 HOH HOH . 
H 5 HOH A 39 539 44 HOH HOH . 
H 5 HOH A 40 540 59 HOH HOH . 
H 5 HOH A 41 541 38 HOH HOH . 
H 5 HOH A 42 542 45 HOH HOH . 
H 5 HOH A 43 543 60 HOH HOH . 
H 5 HOH A 44 544 43 HOH HOH . 
H 5 HOH A 45 545 37 HOH HOH . 
H 5 HOH A 46 546 42 HOH HOH . 
H 5 HOH A 47 547 41 HOH HOH . 
H 5 HOH A 48 548 36 HOH HOH . 
H 5 HOH A 49 549 53 HOH HOH . 
H 5 HOH A 50 550 58 HOH HOH . 
H 5 HOH A 51 551 40 HOH HOH . 
H 5 HOH A 52 552 50 HOH HOH . 
H 5 HOH A 53 553 54 HOH HOH . 
H 5 HOH A 54 554 51 HOH HOH . 
H 5 HOH A 55 555 47 HOH HOH . 
H 5 HOH A 56 556 52 HOH HOH . 
H 5 HOH A 57 557 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 ROQ . . . B 2 21.623 25.657 28.962 1 224.8 ? C01 ROQ 401 A 1 
HETATM 2 C C02 ROQ . . . B 2 20.231 25.157 29.305 1 227.54 ? C02 ROQ 401 A 1 
HETATM 3 C C03 ROQ . . . B 2 19.044 25.955 28.808 1 215.73 ? C03 ROQ 401 A 1 
HETATM 4 C C04 ROQ . . . B 2 20.03 24.964 30.804 1 233.46 ? C04 ROQ 401 A 1 
HETATM 5 C C05 ROQ . . . B 2 22.465 24.947 28.162 1 227.4 ? C05 ROQ 401 A 1 
HETATM 6 C C06 ROQ . . . B 2 17.667 25.388 28.741 1 204.99 ? C06 ROQ 401 A 1 
HETATM 7 O O01 ROQ . . . B 2 22.001 26.723 29.405 1 218.4 ? O01 ROQ 401 A 1 
HETATM 8 O O02 ROQ . . . B 2 23.536 25.395 27.849 1 226.06 ? O02 ROQ 401 A 1 
HETATM 9 O O03 ROQ . . . B 2 22.306 23.749 27.619 1 226.1 -1 O03 ROQ 401 A 1 
HETATM 10 O O04 ROQ . . . B 2 16.812 25.623 29.552 1 200.47 ? O04 ROQ 401 A 1 
HETATM 11 O O05 ROQ . . . B 2 17.455 24.618 27.688 1 200.39 -1 O05 ROQ 401 A 1 
HETATM 12 H H01 ROQ . . . B 2 20.164 24.268 28.922 1 273.1 ? H01 ROQ 401 A 1 
HETATM 13 H H02 ROQ . . . B 2 19.042 26.822 29.242 1 258.93 ? H02 ROQ 401 A 1 
HETATM 14 H H03 ROQ . . . B 2 19.282 26.389 27.974 1 258.93 ? H03 ROQ 401 A 1 
HETATM 15 H H04 ROQ . . . B 2 20.581 25.592 31.296 1 280.2 ? H04 ROQ 401 A 1 
HETATM 16 H H05 ROQ . . . B 2 20.278 24.061 31.057 1 280.2 ? H05 ROQ 401 A 1 
HETATM 17 H H06 ROQ . . . B 2 19.099 25.111 31.035 1 280.2 ? H06 ROQ 401 A 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           17 
#