data_7A1M # _model_server_result.job_id j9bx4yYGHFldL_gx2uGI7Q _model_server_result.datetime_utc '2024-11-13 20:12:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7A1M # _exptl.entry_id 7A1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 188.178 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-propyl-2-oxoglutarate _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7A1M _cell.length_a 85.954 _cell.length_b 85.954 _cell.length_c 148.957 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 85.954 85.954 74.4785 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 A OD2 ASP 201 A ASP 201 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc3 A NE2 HIS 279 A HIS 279 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc4 B ZN ZN . A ZN 500 1_555 C O04 QVW . A QVW 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc5 B ZN ZN . A ZN 500 1_555 C O05 QVW . A QVW 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc6 B ZN ZN . A ZN 500 1_555 G O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? # _chem_comp.formula 'C8 H12 O5' _chem_comp.formula_weight 188.178 _chem_comp.id QVW _chem_comp.mon_nstd_flag . _chem_comp.name 3-propyl-2-oxoglutarate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(3~{S})-2-oxidanylidene-3-propyl-pentanedioic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C08 QVW doub 277 n n O02 C01 QVW doub 278 n n O05 C08 QVW sing 279 n n C08 C02 QVW sing 280 n n C01 C04 QVW sing 281 n n C01 O03 QVW sing 282 n n C02 C03 QVW sing 283 n n C02 O04 QVW doub 284 n n C04 C03 QVW sing 285 n n C03 C05 QVW sing 286 n n C05 C06 QVW sing 287 n n C06 C07 QVW sing 288 n n C03 H01 QVW sing 289 n n C04 H03 QVW sing 290 n n C04 H02 QVW sing 291 n n C05 H04 QVW sing 292 n n C05 H05 QVW sing 293 n n C06 H07 QVW sing 294 n n C06 H06 QVW sing 295 n n C07 H10 QVW sing 296 n n C07 H08 QVW sing 297 n n C07 H09 QVW sing 298 n n O03 H1 QVW sing 299 n n O05 H2 QVW sing 300 n n # _atom_sites.entry_id 7A1M _atom_sites.fract_transf_matrix[1][1] 0.011634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 500 500 ZN ZN . C 3 QVW A 1 501 501 QVW LIG . D 4 SO4 A 1 502 502 SO4 SO4 . E 4 SO4 A 1 503 503 SO4 SO4 . F 4 SO4 A 1 504 504 SO4 SO4 . G 5 HOH A 1 601 37 HOH HOH . G 5 HOH A 2 602 30 HOH HOH . G 5 HOH A 3 603 3 HOH HOH . G 5 HOH A 4 604 5 HOH HOH . G 5 HOH A 5 605 35 HOH HOH . G 5 HOH A 6 606 59 HOH HOH . G 5 HOH A 7 607 1 HOH HOH . G 5 HOH A 8 608 11 HOH HOH . G 5 HOH A 9 609 7 HOH HOH . G 5 HOH A 10 610 26 HOH HOH . G 5 HOH A 11 611 16 HOH HOH . G 5 HOH A 12 612 8 HOH HOH . G 5 HOH A 13 613 2 HOH HOH . G 5 HOH A 14 614 15 HOH HOH . G 5 HOH A 15 615 38 HOH HOH . G 5 HOH A 16 616 10 HOH HOH . G 5 HOH A 17 617 17 HOH HOH . G 5 HOH A 18 618 19 HOH HOH . G 5 HOH A 19 619 9 HOH HOH . G 5 HOH A 20 620 25 HOH HOH . G 5 HOH A 21 621 18 HOH HOH . G 5 HOH A 22 622 6 HOH HOH . G 5 HOH A 23 623 4 HOH HOH . G 5 HOH A 24 624 33 HOH HOH . G 5 HOH A 25 625 29 HOH HOH . G 5 HOH A 26 626 28 HOH HOH . G 5 HOH A 27 627 23 HOH HOH . G 5 HOH A 28 628 36 HOH HOH . G 5 HOH A 29 629 21 HOH HOH . G 5 HOH A 30 630 20 HOH HOH . G 5 HOH A 31 631 22 HOH HOH . G 5 HOH A 32 632 40 HOH HOH . G 5 HOH A 33 633 13 HOH HOH . G 5 HOH A 34 634 24 HOH HOH . G 5 HOH A 35 635 14 HOH HOH . G 5 HOH A 36 636 39 HOH HOH . G 5 HOH A 37 637 31 HOH HOH . G 5 HOH A 38 638 52 HOH HOH . G 5 HOH A 39 639 60 HOH HOH . G 5 HOH A 40 640 48 HOH HOH . G 5 HOH A 41 641 43 HOH HOH . G 5 HOH A 42 642 58 HOH HOH . G 5 HOH A 43 643 42 HOH HOH . G 5 HOH A 44 644 47 HOH HOH . G 5 HOH A 45 645 44 HOH HOH . G 5 HOH A 46 646 55 HOH HOH . G 5 HOH A 47 647 46 HOH HOH . G 5 HOH A 48 648 65 HOH HOH . G 5 HOH A 49 649 54 HOH HOH . G 5 HOH A 50 650 57 HOH HOH . G 5 HOH A 51 651 53 HOH HOH . G 5 HOH A 52 652 61 HOH HOH . G 5 HOH A 53 653 56 HOH HOH . G 5 HOH A 54 654 45 HOH HOH . G 5 HOH A 55 655 32 HOH HOH . G 5 HOH A 56 656 50 HOH HOH . G 5 HOH A 57 657 41 HOH HOH . G 5 HOH A 58 658 64 HOH HOH . G 5 HOH A 59 659 49 HOH HOH . G 5 HOH A 60 660 63 HOH HOH . G 5 HOH A 61 661 62 HOH HOH . G 5 HOH A 62 662 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 QVW . . . C 3 17.323 25.193 28.663 1 62.56 ? C01 QVW 501 A 1 HETATM 2 C C02 QVW . . . C 3 21.279 25.857 28.682 1 69.95 ? C02 QVW 501 A 1 HETATM 3 C C03 QVW . . . C 3 19.979 24.969 28.873 1 67.2 ? C03 QVW 501 A 1 HETATM 4 C C04 QVW . . . C 3 18.661 25.879 28.708 1 63.45 ? C04 QVW 501 A 1 HETATM 5 C C05 QVW . . . C 3 20.062 23.968 30.041 1 69.87 ? C05 QVW 501 A 1 HETATM 6 C C06 QVW . . . C 3 20.993 24.333 31.214 1 68.24 ? C06 QVW 501 A 1 HETATM 7 C C07 QVW . . . C 3 20.436 23.815 32.538 1 65.36 ? C07 QVW 501 A 1 HETATM 8 C C08 QVW . . . C 3 22.288 25.232 28.018 1 72.39 ? C08 QVW 501 A 1 HETATM 9 O O01 QVW . . . C 3 22.217 23.95 27.398 1 74.04 -1 O01 QVW 501 A 1 HETATM 10 O O02 QVW . . . C 3 17.14 24.386 27.783 1 62.43 ? O02 QVW 501 A 1 HETATM 11 O O03 QVW . . . C 3 16.342 25.52 29.511 1 61.06 -1 O03 QVW 501 A 1 HETATM 12 O O04 QVW . . . C 3 21.252 26.983 29.145 1 77.94 ? O04 QVW 501 A 1 HETATM 13 O O05 QVW . . . C 3 23.376 25.822 27.942 1 70.98 ? O05 QVW 501 A 1 HETATM 14 H H01 QVW . . . C 3 19.838 24.339 28.149 1 80.92 ? H01 QVW 501 A 1 HETATM 15 H H03 QVW . . . C 3 18.695 26.495 29.457 1 76.42 ? H03 QVW 501 A 1 HETATM 16 H H02 QVW . . . C 3 18.809 26.376 27.889 1 76.42 ? H02 QVW 501 A 1 HETATM 17 H H04 QVW . . . C 3 20.265 23.105 29.648 1 84.13 ? H04 QVW 501 A 1 HETATM 18 H H05 QVW . . . C 3 19.149 23.795 30.319 1 84.13 ? H05 QVW 501 A 1 HETATM 19 H H07 QVW . . . C 3 21.004 25.302 31.162 1 82.17 ? H07 QVW 501 A 1 HETATM 20 H H06 QVW . . . C 3 21.818 23.894 30.954 1 82.17 ? H06 QVW 501 A 1 HETATM 21 H H10 QVW . . . C 3 19.975 24.523 33.015 1 78.72 ? H10 QVW 501 A 1 HETATM 22 H H08 QVW . . . C 3 21.151 23.482 33.103 1 78.72 ? H08 QVW 501 A 1 HETATM 23 H H09 QVW . . . C 3 19.807 23.092 32.384 1 78.72 ? H09 QVW 501 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 23 #