data_7A1O # _model_server_result.job_id mvG5UlqmW82TsJ9MMpX6Lw _model_server_result.datetime_utc '2024-11-15 15:51:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":505}' # _entry.id 7A1O # _exptl.entry_id 7A1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.151 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-ethyl-2-oxoglutarate _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7A1O _cell.length_a 86.288 _cell.length_b 86.288 _cell.length_c 146.934 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 86.288 -86.288 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc2 A OD2 ASP 201 A ASP 201 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc3 A NE2 HIS 279 A HIS 279 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc4 C ZN ZN . A ZN 501 1_555 G O05 QVT . A QVT 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc5 C ZN ZN . A ZN 501 1_555 G O04 QVT . A QVT 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? # _chem_comp.formula 'C7 H10 O5' _chem_comp.formula_weight 174.151 _chem_comp.id QVT _chem_comp.mon_nstd_flag . _chem_comp.name 4-ethyl-2-oxoglutarate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2~{S})-2-ethyl-4-oxidanylidene-pentanedioic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 C04 QVT sing 277 n n C04 C05 QVT sing 278 n n O01 C01 QVT doub 279 n n C05 C01 QVT sing 280 n n C05 C06 QVT sing 281 n n C01 O02 QVT sing 282 n n O05 C07 QVT doub 283 n n C07 C06 QVT sing 284 n n C07 C02 QVT sing 285 n n O04 C02 QVT doub 286 n n C02 O03 QVT sing 287 n n C03 H04 QVT sing 288 n n C03 H05 QVT sing 289 n n C03 H03 QVT sing 290 n n C04 H06 QVT sing 291 n n C04 H07 QVT sing 292 n n C05 H08 QVT sing 293 n n C06 H10 QVT sing 294 n n C06 H09 QVT sing 295 n n O02 H1 QVT sing 296 n n O03 H2 QVT sing 297 n n # _atom_sites.entry_id 7A1O _atom_sites.fract_transf_matrix[1][1] 0.011589 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 501 ZN ZN . D 4 SO4 A 1 502 902 SO4 SO4 . E 4 SO4 A 1 503 904 SO4 SO4 . F 4 SO4 A 1 504 905 SO4 SO4 . G 5 QVT A 1 505 1 QVT LIG . H 4 SO4 A 1 506 1 SO4 SO4 . I 6 HOH A 1 601 80 HOH HOH . I 6 HOH A 2 602 2 HOH HOH . I 6 HOH A 3 603 26 HOH HOH . I 6 HOH A 4 604 27 HOH HOH . I 6 HOH A 5 605 3 HOH HOH . I 6 HOH A 6 606 92 HOH HOH . I 6 HOH A 7 607 7 HOH HOH . I 6 HOH A 8 608 30 HOH HOH . I 6 HOH A 9 609 36 HOH HOH . I 6 HOH A 10 610 16 HOH HOH . I 6 HOH A 11 611 69 HOH HOH . I 6 HOH A 12 612 5 HOH HOH . I 6 HOH A 13 613 17 HOH HOH . I 6 HOH A 14 614 8 HOH HOH . I 6 HOH A 15 615 91 HOH HOH . I 6 HOH A 16 616 74 HOH HOH . I 6 HOH A 17 617 31 HOH HOH . I 6 HOH A 18 618 88 HOH HOH . I 6 HOH A 19 619 39 HOH HOH . I 6 HOH A 20 620 12 HOH HOH . I 6 HOH A 21 621 1 HOH HOH . I 6 HOH A 22 622 25 HOH HOH . I 6 HOH A 23 623 10 HOH HOH . I 6 HOH A 24 624 24 HOH HOH . I 6 HOH A 25 625 6 HOH HOH . I 6 HOH A 26 626 21 HOH HOH . I 6 HOH A 27 627 33 HOH HOH . I 6 HOH A 28 628 11 HOH HOH . I 6 HOH A 29 629 9 HOH HOH . I 6 HOH A 30 630 23 HOH HOH . I 6 HOH A 31 631 65 HOH HOH . I 6 HOH A 32 632 41 HOH HOH . I 6 HOH A 33 633 83 HOH HOH . I 6 HOH A 34 634 57 HOH HOH . I 6 HOH A 35 635 28 HOH HOH . I 6 HOH A 36 636 73 HOH HOH . I 6 HOH A 37 637 32 HOH HOH . I 6 HOH A 38 638 14 HOH HOH . I 6 HOH A 39 639 38 HOH HOH . I 6 HOH A 40 640 37 HOH HOH . I 6 HOH A 41 641 59 HOH HOH . I 6 HOH A 42 642 43 HOH HOH . I 6 HOH A 43 643 13 HOH HOH . I 6 HOH A 44 644 70 HOH HOH . I 6 HOH A 45 645 86 HOH HOH . I 6 HOH A 46 646 34 HOH HOH . I 6 HOH A 47 647 40 HOH HOH . I 6 HOH A 48 648 35 HOH HOH . I 6 HOH A 49 649 82 HOH HOH . I 6 HOH A 50 650 42 HOH HOH . I 6 HOH A 51 651 66 HOH HOH . I 6 HOH A 52 652 63 HOH HOH . I 6 HOH A 53 653 60 HOH HOH . I 6 HOH A 54 654 20 HOH HOH . I 6 HOH A 55 655 53 HOH HOH . I 6 HOH A 56 656 68 HOH HOH . I 6 HOH A 57 657 89 HOH HOH . I 6 HOH A 58 658 47 HOH HOH . I 6 HOH A 59 659 44 HOH HOH . I 6 HOH A 60 660 87 HOH HOH . I 6 HOH A 61 661 46 HOH HOH . I 6 HOH A 62 662 50 HOH HOH . I 6 HOH A 63 663 52 HOH HOH . I 6 HOH A 64 664 97 HOH HOH . I 6 HOH A 65 665 95 HOH HOH . I 6 HOH A 66 666 48 HOH HOH . I 6 HOH A 67 667 79 HOH HOH . I 6 HOH A 68 668 75 HOH HOH . I 6 HOH A 69 669 77 HOH HOH . I 6 HOH A 70 670 58 HOH HOH . I 6 HOH A 71 671 84 HOH HOH . I 6 HOH A 72 672 62 HOH HOH . I 6 HOH A 73 673 96 HOH HOH . I 6 HOH A 74 674 54 HOH HOH . I 6 HOH A 75 675 78 HOH HOH . I 6 HOH A 76 676 85 HOH HOH . I 6 HOH A 77 677 55 HOH HOH . I 6 HOH A 78 678 51 HOH HOH . I 6 HOH A 79 679 18 HOH HOH . I 6 HOH A 80 680 67 HOH HOH . I 6 HOH A 81 681 94 HOH HOH . I 6 HOH A 82 682 90 HOH HOH . I 6 HOH A 83 683 93 HOH HOH . I 6 HOH A 84 684 71 HOH HOH . I 6 HOH A 85 685 76 HOH HOH . I 6 HOH A 86 686 72 HOH HOH . I 6 HOH A 87 687 81 HOH HOH . J 6 HOH B 1 101 4 HOH HOH . J 6 HOH B 2 102 19 HOH HOH . J 6 HOH B 3 103 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 QVT . . . G 5 17.439 -25.438 7.951 1 67.91 ? C01 QVT 505 A 1 HETATM 2 C C02 QVT . . . G 5 22.254 -25.341 8.89 1 72.1 ? C02 QVT 505 A 1 HETATM 3 C C03 QVT . . . G 5 20.586 -25.022 5.721 1 85.35 ? C03 QVT 505 A 1 HETATM 4 C C04 QVT . . . G 5 19.168 -24.624 6.262 1 81.61 ? C04 QVT 505 A 1 HETATM 5 C C05 QVT . . . G 5 18.814 -25.595 7.412 1 74.74 ? C05 QVT 505 A 1 HETATM 6 C C06 QVT . . . G 5 19.831 -25.258 8.533 1 75.04 ? C06 QVT 505 A 1 HETATM 7 C C07 QVT . . . G 5 21.139 -26.029 8.508 1 74.49 ? C07 QVT 505 A 1 HETATM 8 O O01 QVT . . . G 5 16.496 -26.024 7.183 1 67.32 -1 O01 QVT 505 A 1 HETATM 9 O O02 QVT . . . G 5 17.146 -24.836 8.965 1 61.92 ? O02 QVT 505 A 1 HETATM 10 O O03 QVT . . . G 5 22.356 -24.125 9.46 1 71.69 -1 O03 QVT 505 A 1 HETATM 11 O O04 QVT . . . G 5 23.363 -25.775 8.747 1 71.9 ? O04 QVT 505 A 1 HETATM 12 O O05 QVT . . . G 5 21.203 -27.19 8.147 1 76.81 ? O05 QVT 505 A 1 HETATM 13 H H04 QVT . . . G 5 20.714 -24.734 4.804 1 102.45 ? H04 QVT 505 A 1 HETATM 14 H H05 QVT . . . G 5 20.722 -25.982 5.741 1 102.45 ? H05 QVT 505 A 1 HETATM 15 H H03 QVT . . . G 5 21.296 -24.623 6.247 1 102.45 ? H03 QVT 505 A 1 HETATM 16 H H06 QVT . . . G 5 18.51 -24.665 5.55 1 97.96 ? H06 QVT 505 A 1 HETATM 17 H H07 QVT . . . G 5 19.168 -23.703 6.566 1 97.96 ? H07 QVT 505 A 1 HETATM 18 H H08 QVT . . . G 5 18.871 -26.516 7.114 1 89.72 ? H08 QVT 505 A 1 HETATM 19 H H10 QVT . . . G 5 19.378 -25.433 9.372 1 90.08 ? H10 QVT 505 A 1 HETATM 20 H H09 QVT . . . G 5 20.022 -24.311 8.451 1 90.08 ? H09 QVT 505 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #