data_7A1Q # _model_server_result.job_id 15jkPBaPeGxk-4XPb7lqrA _model_server_result.datetime_utc '2024-11-15 15:43:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":505}' # _entry.id 7A1Q # _exptl.entry_id 7A1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.162 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(carboxycarbonyl)cyclopentane-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7A1Q _cell.length_a 85.968 _cell.length_b 85.968 _cell.length_c 148.177 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 85.968 -85.968 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 A OD2 ASP 201 A ASP 201 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc3 A NE2 HIS 279 A HIS 279 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 C ZN ZN . A ZN 501 1_555 G O05 QVQ . A QVQ 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc5 C ZN ZN . A ZN 501 1_555 G O03 QVQ . A QVQ 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? # _chem_comp.formula 'C8 H10 O5' _chem_comp.formula_weight 186.162 _chem_comp.id QVQ _chem_comp.mon_nstd_flag . _chem_comp.name '3-(carboxycarbonyl)cyclopentane-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(1~{R},3~{S})-3-(carboxycarbonyl)cyclopentane-1-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 C05 QVQ sing 277 n n C06 C07 QVQ sing 278 n n C05 C04 QVQ sing 279 n n C07 C08 QVQ sing 280 n n C07 C03 QVQ sing 281 n n C04 C01 QVQ sing 282 n n C04 C03 QVQ sing 283 n n O05 C08 QVQ doub 284 n n O02 C01 QVQ doub 285 n n C08 C02 QVQ sing 286 n n C01 O01 QVQ sing 287 n n C02 O03 QVQ doub 288 n n C02 O04 QVQ sing 289 n n C03 H04 QVQ sing 290 n n C03 H03 QVQ sing 291 n n C04 H05 QVQ sing 292 n n C05 H07 QVQ sing 293 n n C05 H06 QVQ sing 294 n n C06 H09 QVQ sing 295 n n C06 H08 QVQ sing 296 n n C07 H10 QVQ sing 297 n n O01 H1 QVQ sing 298 n n O04 H2 QVQ sing 299 n n # _atom_sites.entry_id 7A1Q _atom_sites.fract_transf_matrix[1][1] 0.011632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011632 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 501 ZN ZN . D 4 SO4 A 1 502 901 SO4 SO4 . E 4 SO4 A 1 503 902 SO4 SO4 . F 4 SO4 A 1 504 904 SO4 SO4 . G 5 QVQ A 1 505 1 QVQ LIG . H 6 HOH A 1 601 114 HOH HOH . H 6 HOH A 2 602 116 HOH HOH . H 6 HOH A 3 603 55 HOH HOH . H 6 HOH A 4 604 25 HOH HOH . H 6 HOH A 5 605 23 HOH HOH . H 6 HOH A 6 606 62 HOH HOH . H 6 HOH A 7 607 64 HOH HOH . H 6 HOH A 8 608 127 HOH HOH . H 6 HOH A 9 609 170 HOH HOH . H 6 HOH A 10 610 118 HOH HOH . H 6 HOH A 11 611 49 HOH HOH . H 6 HOH A 12 612 39 HOH HOH . H 6 HOH A 13 613 32 HOH HOH . H 6 HOH A 14 614 1 HOH HOH . H 6 HOH A 15 615 28 HOH HOH . H 6 HOH A 16 616 59 HOH HOH . H 6 HOH A 17 617 4 HOH HOH . H 6 HOH A 18 618 79 HOH HOH . H 6 HOH A 19 619 33 HOH HOH . H 6 HOH A 20 620 47 HOH HOH . H 6 HOH A 21 621 12 HOH HOH . H 6 HOH A 22 622 52 HOH HOH . H 6 HOH A 23 623 88 HOH HOH . H 6 HOH A 24 624 50 HOH HOH . H 6 HOH A 25 625 80 HOH HOH . H 6 HOH A 26 626 2 HOH HOH . H 6 HOH A 27 627 38 HOH HOH . H 6 HOH A 28 628 24 HOH HOH . H 6 HOH A 29 629 43 HOH HOH . H 6 HOH A 30 630 130 HOH HOH . H 6 HOH A 31 631 5 HOH HOH . H 6 HOH A 32 632 98 HOH HOH . H 6 HOH A 33 633 22 HOH HOH . H 6 HOH A 34 634 37 HOH HOH . H 6 HOH A 35 635 106 HOH HOH . H 6 HOH A 36 636 107 HOH HOH . H 6 HOH A 37 637 60 HOH HOH . H 6 HOH A 38 638 34 HOH HOH . H 6 HOH A 39 639 17 HOH HOH . H 6 HOH A 40 640 6 HOH HOH . H 6 HOH A 41 641 103 HOH HOH . H 6 HOH A 42 642 82 HOH HOH . H 6 HOH A 43 643 57 HOH HOH . H 6 HOH A 44 644 56 HOH HOH . H 6 HOH A 45 645 53 HOH HOH . H 6 HOH A 46 646 101 HOH HOH . H 6 HOH A 47 647 124 HOH HOH . H 6 HOH A 48 648 9 HOH HOH . H 6 HOH A 49 649 92 HOH HOH . H 6 HOH A 50 650 126 HOH HOH . H 6 HOH A 51 651 97 HOH HOH . H 6 HOH A 52 652 36 HOH HOH . H 6 HOH A 53 653 11 HOH HOH . H 6 HOH A 54 654 63 HOH HOH . H 6 HOH A 55 655 40 HOH HOH . H 6 HOH A 56 656 122 HOH HOH . H 6 HOH A 57 657 75 HOH HOH . H 6 HOH A 58 658 15 HOH HOH . H 6 HOH A 59 659 8 HOH HOH . H 6 HOH A 60 660 7 HOH HOH . H 6 HOH A 61 661 21 HOH HOH . H 6 HOH A 62 662 68 HOH HOH . H 6 HOH A 63 663 70 HOH HOH . H 6 HOH A 64 664 108 HOH HOH . H 6 HOH A 65 665 65 HOH HOH . H 6 HOH A 66 666 29 HOH HOH . H 6 HOH A 67 667 13 HOH HOH . H 6 HOH A 68 668 61 HOH HOH . H 6 HOH A 69 669 111 HOH HOH . H 6 HOH A 70 670 156 HOH HOH . H 6 HOH A 71 671 172 HOH HOH . H 6 HOH A 72 672 27 HOH HOH . H 6 HOH A 73 673 30 HOH HOH . H 6 HOH A 74 674 10 HOH HOH . H 6 HOH A 75 675 14 HOH HOH . H 6 HOH A 76 676 77 HOH HOH . H 6 HOH A 77 677 89 HOH HOH . H 6 HOH A 78 678 76 HOH HOH . H 6 HOH A 79 679 31 HOH HOH . H 6 HOH A 80 680 45 HOH HOH . H 6 HOH A 81 681 3 HOH HOH . H 6 HOH A 82 682 20 HOH HOH . H 6 HOH A 83 683 71 HOH HOH . H 6 HOH A 84 684 26 HOH HOH . H 6 HOH A 85 685 183 HOH HOH . H 6 HOH A 86 686 18 HOH HOH . H 6 HOH A 87 687 95 HOH HOH . H 6 HOH A 88 688 113 HOH HOH . H 6 HOH A 89 689 58 HOH HOH . H 6 HOH A 90 690 48 HOH HOH . H 6 HOH A 91 691 19 HOH HOH . H 6 HOH A 92 692 169 HOH HOH . H 6 HOH A 93 693 35 HOH HOH . H 6 HOH A 94 694 132 HOH HOH . H 6 HOH A 95 695 185 HOH HOH . H 6 HOH A 96 696 134 HOH HOH . H 6 HOH A 97 697 54 HOH HOH . H 6 HOH A 98 698 177 HOH HOH . H 6 HOH A 99 699 86 HOH HOH . H 6 HOH A 100 700 93 HOH HOH . H 6 HOH A 101 701 16 HOH HOH . H 6 HOH A 102 702 41 HOH HOH . H 6 HOH A 103 703 180 HOH HOH . H 6 HOH A 104 704 140 HOH HOH . H 6 HOH A 105 705 110 HOH HOH . H 6 HOH A 106 706 51 HOH HOH . H 6 HOH A 107 707 135 HOH HOH . H 6 HOH A 108 708 74 HOH HOH . H 6 HOH A 109 709 104 HOH HOH . H 6 HOH A 110 710 137 HOH HOH . H 6 HOH A 111 711 66 HOH HOH . H 6 HOH A 112 712 131 HOH HOH . H 6 HOH A 113 713 175 HOH HOH . H 6 HOH A 114 714 167 HOH HOH . H 6 HOH A 115 715 136 HOH HOH . H 6 HOH A 116 716 69 HOH HOH . H 6 HOH A 117 717 109 HOH HOH . H 6 HOH A 118 718 87 HOH HOH . H 6 HOH A 119 719 179 HOH HOH . H 6 HOH A 120 720 139 HOH HOH . H 6 HOH A 121 721 128 HOH HOH . H 6 HOH A 122 722 105 HOH HOH . H 6 HOH A 123 723 78 HOH HOH . H 6 HOH A 124 724 83 HOH HOH . H 6 HOH A 125 725 102 HOH HOH . H 6 HOH A 126 726 186 HOH HOH . H 6 HOH A 127 727 100 HOH HOH . H 6 HOH A 128 728 117 HOH HOH . H 6 HOH A 129 729 152 HOH HOH . H 6 HOH A 130 730 120 HOH HOH . H 6 HOH A 131 731 181 HOH HOH . H 6 HOH A 132 732 147 HOH HOH . H 6 HOH A 133 733 178 HOH HOH . H 6 HOH A 134 734 158 HOH HOH . H 6 HOH A 135 735 155 HOH HOH . H 6 HOH A 136 736 84 HOH HOH . H 6 HOH A 137 737 141 HOH HOH . H 6 HOH A 138 738 168 HOH HOH . H 6 HOH A 139 739 144 HOH HOH . H 6 HOH A 140 740 146 HOH HOH . H 6 HOH A 141 741 145 HOH HOH . H 6 HOH A 142 742 138 HOH HOH . H 6 HOH A 143 743 94 HOH HOH . H 6 HOH A 144 744 176 HOH HOH . H 6 HOH A 145 745 143 HOH HOH . H 6 HOH A 146 746 90 HOH HOH . H 6 HOH A 147 747 133 HOH HOH . H 6 HOH A 148 748 161 HOH HOH . H 6 HOH A 149 749 171 HOH HOH . H 6 HOH A 150 750 160 HOH HOH . H 6 HOH A 151 751 174 HOH HOH . H 6 HOH A 152 752 173 HOH HOH . H 6 HOH A 153 753 153 HOH HOH . H 6 HOH A 154 754 119 HOH HOH . H 6 HOH A 155 755 148 HOH HOH . H 6 HOH A 156 756 157 HOH HOH . H 6 HOH A 157 757 149 HOH HOH . H 6 HOH A 158 758 165 HOH HOH . H 6 HOH A 159 759 91 HOH HOH . H 6 HOH A 160 760 121 HOH HOH . H 6 HOH A 161 761 44 HOH HOH . H 6 HOH A 162 762 184 HOH HOH . H 6 HOH A 163 763 125 HOH HOH . H 6 HOH A 164 764 99 HOH HOH . H 6 HOH A 165 765 182 HOH HOH . H 6 HOH A 166 766 142 HOH HOH . H 6 HOH A 167 767 85 HOH HOH . H 6 HOH A 168 768 159 HOH HOH . H 6 HOH A 169 769 162 HOH HOH . H 6 HOH A 170 770 81 HOH HOH . H 6 HOH A 171 771 154 HOH HOH . H 6 HOH A 172 772 166 HOH HOH . H 6 HOH A 173 773 164 HOH HOH . H 6 HOH A 174 774 163 HOH HOH . I 6 HOH B 1 101 72 HOH HOH . I 6 HOH B 2 102 96 HOH HOH . I 6 HOH B 3 103 67 HOH HOH . I 6 HOH B 4 104 150 HOH HOH . I 6 HOH B 5 105 42 HOH HOH . I 6 HOH B 6 106 46 HOH HOH . I 6 HOH B 7 107 73 HOH HOH . I 6 HOH B 8 108 123 HOH HOH . I 6 HOH B 9 109 151 HOH HOH . I 6 HOH B 10 110 112 HOH HOH . I 6 HOH B 11 111 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 QVQ . . . G 5 16.767 -25.075 7.955 1 48.99 ? C01 QVQ 505 A 1 HETATM 2 C C02 QVQ . . . G 5 22.536 -25.119 8.804 1 68.24 ? C02 QVQ 505 A 1 HETATM 3 C C03 QVQ . . . G 5 19.33 -24.547 8.115 1 52.79 ? C03 QVQ 505 A 1 HETATM 4 C C04 QVQ . . . G 5 18.067 -24.903 7.152 1 56.98 ? C04 QVQ 505 A 1 HETATM 5 C C05 QVQ . . . G 5 18.789 -25.907 6.188 1 71.09 ? C05 QVQ 505 A 1 HETATM 6 C C06 QVQ . . . G 5 19.927 -24.928 5.82 1 69.63 ? C06 QVQ 505 A 1 HETATM 7 C C07 QVQ . . . G 5 20.606 -24.541 7.134 1 59.26 ? C07 QVQ 505 A 1 HETATM 8 C C08 QVQ . . . G 5 21.832 -25.465 7.692 1 65.33 ? C08 QVQ 505 A 1 HETATM 9 O O01 QVQ . . . G 5 16.794 -24.386 9.156 1 46.25 -1 O01 QVQ 505 A 1 HETATM 10 O O02 QVQ . . . G 5 15.861 -25.704 7.481 1 52.08 ? O02 QVQ 505 A 1 HETATM 11 O O03 QVQ . . . G 5 23.594 -25.86 9.191 1 74.32 -1 O03 QVQ 505 A 1 HETATM 12 O O04 QVQ . . . G 5 22.126 -24.119 9.392 1 71.1 ? O04 QVQ 505 A 1 HETATM 13 O O05 QVQ . . . G 5 22.172 -26.5 7.159 1 61 ? O05 QVQ 505 A 1 HETATM 14 H H04 QVQ . . . G 5 19.162 -23.678 8.513 1 63.44 ? H04 QVQ 505 A 1 HETATM 15 H H03 QVQ . . . G 5 19.385 -25.234 8.796 1 63.44 ? H03 QVQ 505 A 1 HETATM 16 H H05 QVQ . . . G 5 17.802 -24.303 6.438 1 68.46 ? H05 QVQ 505 A 1 HETATM 17 H H07 QVQ . . . G 5 19.033 -26.681 6.72 1 85.4 ? H07 QVQ 505 A 1 HETATM 18 H H06 QVQ . . . G 5 18.157 -26.126 5.486 1 85.4 ? H06 QVQ 505 A 1 HETATM 19 H H09 QVQ . . . G 5 19.614 -24.195 5.268 1 83.64 ? H09 QVQ 505 A 1 HETATM 20 H H08 QVQ . . . G 5 20.505 -25.283 5.127 1 83.64 ? H08 QVQ 505 A 1 HETATM 21 H H10 QVQ . . . G 5 20.865 -23.608 7.088 1 71.19 ? H10 QVQ 505 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 423 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #