data_7A20 # _model_server_result.job_id v2oPV11GQDGOEPYBiCWF0w _model_server_result.datetime_utc '2024-11-27 23:51:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 7A20 # _exptl.entry_id 7A20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7A20 _cell.length_a 94.368 _cell.length_b 95.968 _cell.length_c 184.719 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_544 -x,y-1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 -47.984 -92.3595 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O GLY 531 B GLY 232 1_555 E NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc2 B O PHE 605 B PHE 306 1_555 E NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc3 B O SER 607 B SER 308 1_555 E NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc4 D O GLY 531 D GLY 232 1_555 G NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc5 D O PHE 605 D PHE 306 1_555 G NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc6 D O SER 607 D SER 308 1_555 G NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7A20 _atom_sites.fract_transf_matrix[1][1] 0.010597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA B 1 501 1 NA NA . F 3 144 B 1 502 2 144 144 . G 2 NA D 1 501 2 NA NA . H 3 144 D 1 502 1 144 144 . I 4 HOH A 1 701 35 HOH HOH . I 4 HOH A 2 702 21 HOH HOH . I 4 HOH A 3 703 40 HOH HOH . I 4 HOH A 4 704 30 HOH HOH . I 4 HOH A 5 705 32 HOH HOH . I 4 HOH A 6 706 43 HOH HOH . I 4 HOH A 7 707 16 HOH HOH . I 4 HOH A 8 708 31 HOH HOH . I 4 HOH A 9 709 13 HOH HOH . I 4 HOH A 10 710 37 HOH HOH . J 4 HOH B 1 601 10 HOH HOH . J 4 HOH B 2 602 23 HOH HOH . J 4 HOH B 3 603 3 HOH HOH . J 4 HOH B 4 604 36 HOH HOH . J 4 HOH B 5 605 5 HOH HOH . J 4 HOH B 6 606 9 HOH HOH . J 4 HOH B 7 607 7 HOH HOH . J 4 HOH B 8 608 22 HOH HOH . J 4 HOH B 9 609 8 HOH HOH . J 4 HOH B 10 610 12 HOH HOH . J 4 HOH B 11 611 17 HOH HOH . J 4 HOH B 12 612 45 HOH HOH . J 4 HOH B 13 613 28 HOH HOH . J 4 HOH B 14 614 20 HOH HOH . J 4 HOH B 15 615 33 HOH HOH . K 4 HOH C 1 701 38 HOH HOH . K 4 HOH C 2 702 14 HOH HOH . K 4 HOH C 3 703 34 HOH HOH . K 4 HOH C 4 704 1 HOH HOH . K 4 HOH C 5 705 19 HOH HOH . K 4 HOH C 6 706 11 HOH HOH . L 4 HOH D 1 601 42 HOH HOH . L 4 HOH D 2 602 6 HOH HOH . L 4 HOH D 3 603 41 HOH HOH . L 4 HOH D 4 604 27 HOH HOH . L 4 HOH D 5 605 4 HOH HOH . L 4 HOH D 6 606 24 HOH HOH . L 4 HOH D 7 607 26 HOH HOH . L 4 HOH D 8 608 15 HOH HOH . L 4 HOH D 9 609 39 HOH HOH . L 4 HOH D 10 610 18 HOH HOH . L 4 HOH D 11 611 2 HOH HOH . L 4 HOH D 12 612 25 HOH HOH . L 4 HOH D 13 613 29 HOH HOH . L 4 HOH D 14 614 44 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 28.602 _atom_site.Cartn_y -12.089 _atom_site.Cartn_z -66.172 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 66.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #