data_7A3D # _model_server_result.job_id ArDgLVWxjIGzDiYTsP0wYw _model_server_result.datetime_utc '2024-10-21 01:41:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 7A3D # _exptl.entry_id 7A3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7A3D _cell.length_a 47.232 _cell.length_b 47.232 _cell.length_c 126.413 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 234 n n C1 C2 PGE sing 235 n n C1 H1 PGE sing 236 n n C1 H12 PGE sing 237 n n O1 HO1 PGE sing 238 n n C2 O2 PGE sing 239 n n C2 H2 PGE sing 240 n n C2 H22 PGE sing 241 n n O2 C3 PGE sing 242 n n C3 C4 PGE sing 243 n n C3 H3 PGE sing 244 n n C3 H32 PGE sing 245 n n C4 O3 PGE sing 246 n n C4 H4 PGE sing 247 n n C4 H42 PGE sing 248 n n O4 C6 PGE sing 249 n n O4 HO4 PGE sing 250 n n C6 C5 PGE sing 251 n n C6 H6 PGE sing 252 n n C6 H62 PGE sing 253 n n C5 O3 PGE sing 254 n n C5 H5 PGE sing 255 n n C5 H52 PGE sing 256 n n # _atom_sites.entry_id 7A3D _atom_sites.fract_transf_matrix[1][1] 0.021172 _atom_sites.fract_transf_matrix[1][2] 0.012224 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 201 203 PEG PEG . D 2 PEG A 1 202 204 PEG PEG . E 3 SO4 A 1 203 201 SO4 SO4 . F 4 PGE B 1 201 202 PGE PGE . G 5 GOL B 1 202 202 GOL GOL . H 6 HOH A 1 301 4 HOH HOH . H 6 HOH A 2 302 2 HOH HOH . H 6 HOH A 3 303 5 HOH HOH . H 6 HOH A 4 304 11 HOH HOH . H 6 HOH A 5 305 13 HOH HOH . H 6 HOH A 6 306 12 HOH HOH . H 6 HOH A 7 307 9 HOH HOH . I 6 HOH B 1 301 1 HOH HOH . I 6 HOH B 2 302 3 HOH HOH . I 6 HOH B 3 303 8 HOH HOH . I 6 HOH B 4 304 10 HOH HOH . I 6 HOH B 5 305 6 HOH HOH . I 6 HOH B 6 306 7 HOH HOH . I 6 HOH B 7 307 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . F 4 55.812 -3.838 0.105 1 44.11 ? C1 PGE 201 B 1 HETATM 2 O O1 PGE . . . F 4 55.046 -4.724 -0.718 1 48.64 ? O1 PGE 201 B 1 HETATM 3 C C2 PGE . . . F 4 56.421 -2.78 -0.775 1 43.03 ? C2 PGE 201 B 1 HETATM 4 O O2 PGE . . . F 4 57.658 -2.361 -0.226 1 49.26 ? O2 PGE 201 B 1 HETATM 5 C C3 PGE . . . F 4 57.675 -1.075 0.408 1 42.87 ? C3 PGE 201 B 1 HETATM 6 C C4 PGE . . . F 4 58.579 -0.101 -0.315 1 41.78 ? C4 PGE 201 B 1 HETATM 7 O O4 PGE . . . F 4 55.649 3.587 0.131 1 47.89 ? O4 PGE 201 B 1 HETATM 8 C C6 PGE . . . F 4 57.018 3.239 0.309 1 40.01 ? C6 PGE 201 B 1 HETATM 9 C C5 PGE . . . F 4 57.219 1.845 -0.24 1 43.52 ? C5 PGE 201 B 1 HETATM 10 O O3 PGE . . . F 4 58.434 1.235 0.177 1 38.52 ? O3 PGE 201 B 1 HETATM 11 H H1 PGE . . . F 4 56.625 -4.364 0.627 1 53.98 ? H1 PGE 201 B 1 HETATM 12 H H12 PGE . . . F 4 55.189 -3.342 0.863 1 53.98 ? H12 PGE 201 B 1 HETATM 13 H HO1 PGE . . . F 4 55.627 -5.44 -0.999 1 59.41 ? HO1 PGE 201 B 1 HETATM 14 H H2 PGE . . . F 4 56.564 -3.191 -1.79 1 52.69 ? H2 PGE 201 B 1 HETATM 15 H H22 PGE . . . F 4 55.721 -1.93 -0.855 1 52.69 ? H22 PGE 201 B 1 HETATM 16 H H3 PGE . . . F 4 56.658 -0.648 0.434 1 52.5 ? H3 PGE 201 B 1 HETATM 17 H H32 PGE . . . F 4 58.027 -1.167 1.449 1 52.5 ? H32 PGE 201 B 1 HETATM 18 H H4 PGE . . . F 4 59.623 -0.439 -0.193 1 51.18 ? H4 PGE 201 B 1 HETATM 19 H H42 PGE . . . F 4 58.338 -0.137 -1.392 1 51.18 ? H42 PGE 201 B 1 HETATM 20 H HO4 PGE . . . F 4 55.498 4.453 0.526 1 58.52 ? HO4 PGE 201 B 1 HETATM 21 H H6 PGE . . . F 4 57.306 3.244 1.374 1 49.07 ? H6 PGE 201 B 1 HETATM 22 H H62 PGE . . . F 4 57.689 3.93 -0.227 1 49.07 ? H62 PGE 201 B 1 HETATM 23 H H5 PGE . . . F 4 56.36 1.232 0.08 1 53.27 ? H5 PGE 201 B 1 HETATM 24 H H52 PGE . . . F 4 57.19 1.912 -1.341 1 53.27 ? H52 PGE 201 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 401 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #