data_7A3D # _model_server_result.job_id Md9flaZOldLX0OOoADPi2w _model_server_result.datetime_utc '2024-10-21 01:18:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 7A3D # _exptl.entry_id 7A3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7A3D _cell.length_a 47.232 _cell.length_b 47.232 _cell.length_c 126.413 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 7A3D _atom_sites.fract_transf_matrix[1][1] 0.021172 _atom_sites.fract_transf_matrix[1][2] 0.012224 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 201 203 PEG PEG . D 2 PEG A 1 202 204 PEG PEG . E 3 SO4 A 1 203 201 SO4 SO4 . F 4 PGE B 1 201 202 PGE PGE . G 5 GOL B 1 202 202 GOL GOL . H 6 HOH A 1 301 4 HOH HOH . H 6 HOH A 2 302 2 HOH HOH . H 6 HOH A 3 303 5 HOH HOH . H 6 HOH A 4 304 11 HOH HOH . H 6 HOH A 5 305 13 HOH HOH . H 6 HOH A 6 306 12 HOH HOH . H 6 HOH A 7 307 9 HOH HOH . I 6 HOH B 1 301 1 HOH HOH . I 6 HOH B 2 302 3 HOH HOH . I 6 HOH B 3 303 8 HOH HOH . I 6 HOH B 4 304 10 HOH HOH . I 6 HOH B 5 305 6 HOH HOH . I 6 HOH B 6 306 7 HOH HOH . I 6 HOH B 7 307 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 65.71 13.562 4.664 1 71.97 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . G 5 66.961 13.905 4.058 1 71.53 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . G 5 64.778 14.78 4.52 1 76.81 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . G 5 64.719 15.231 3.191 1 94.3 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . G 5 63.365 14.395 5.042 1 65.52 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . G 5 62.568 15.587 5.03 1 67.35 ? O3 GOL 202 B 1 HETATM 7 H H11 GOL . . . G 5 65.294 12.791 4.247 1 87.41 ? H11 GOL 202 B 1 HETATM 8 H H12 GOL . . . G 5 65.801 13.339 5.604 1 87.41 ? H12 GOL 202 B 1 HETATM 9 H HO1 GOL . . . G 5 67.509 13.29 4.266 1 86.88 ? HO1 GOL 202 B 1 HETATM 10 H H2 GOL . . . G 5 65.136 15.494 5.071 1 93.22 ? H2 GOL 202 B 1 HETATM 11 H HO2 GOL . . . G 5 64.395 14.601 2.717 1 114.2 ? HO2 GOL 202 B 1 HETATM 12 H H31 GOL . . . G 5 63.007 13.689 4.482 1 79.68 ? H31 GOL 202 B 1 HETATM 13 H H32 GOL . . . G 5 63.454 14.003 5.924 1 79.68 ? H32 GOL 202 B 1 HETATM 14 H HO3 GOL . . . G 5 62.515 15.828 4.211 1 81.87 ? HO3 GOL 202 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #