data_7A3I # _model_server_result.job_id xho3_JFmMdGpyzVG0NwaUA _model_server_result.datetime_utc '2024-10-20 13:03:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":901}' # _entry.id 7A3I # _exptl.entry_id 7A3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.11 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'trimethylamine oxide' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7A3I _cell.length_a 163.649 _cell.length_b 252.318 _cell.length_c 259.962 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,P 1 1 A,D,E,F,G,P 1 2 B,C,H,I,J,K,L,M,N,O,Q,R 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 H N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 755 A SER 755 1_555 E C7 QXH . A QXH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B OG SER 755 B SER 755 1_555 I C7 QXH . B QXH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 C OG SER 755 C SER 755 1_555 M C7 QXH . C QXH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? metalc ? metalc1 A OD1 ASP 278 A ASP 278 1_555 F NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc2 B O GLN 274 B GLN 274 1_555 J NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc3 B OD1 ASP 278 B ASP 278 1_555 J NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc4 B OH TYR 280 B TYR 280 1_555 J NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc5 C OD1 ASP 278 C ASP 278 1_555 N NA NA . C NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc6 C OH TYR 280 C TYR 280 1_555 N NA NA . C NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? # _chem_comp.formula 'C3 H9 N O' _chem_comp.formula_weight 75.11 _chem_comp.id TMO _chem_comp.mon_nstd_flag . _chem_comp.name 'trimethylamine oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA NAC TMO sing 403 n n CAA HAA TMO sing 404 n n CAA HAAA TMO sing 405 n n CAA HAAB TMO sing 406 n n NAC CAD TMO sing 407 n n NAC CAB TMO sing 408 n n NAC OAE TMO sing 409 n n CAD HAD TMO sing 410 n n CAD HADA TMO sing 411 n n CAD HADB TMO sing 412 n n CAB HAB TMO sing 413 n n CAB HABA TMO sing 414 n n CAB HABB TMO sing 415 n n # _atom_sites.entry_id 7A3I _atom_sites.fract_transf_matrix[1][1] 0.006111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 TMO A 1 901 1 TMO TMO . E 3 QXH A 1 902 1 QXH 375 . F 4 NA A 1 903 3 NA NA . G 5 CL A 1 904 3 CL CL . H 2 TMO B 1 901 2 TMO TMO . I 3 QXH B 1 902 2 QXH 375 . J 4 NA B 1 903 1 NA NA . K 5 CL B 1 904 1 CL CL . L 2 TMO C 1 901 3 TMO TMO . M 3 QXH C 1 902 3 QXH 375 . N 4 NA C 1 903 2 NA NA . O 5 CL C 1 904 2 CL CL . P 6 HOH A 1 1001 15 HOH HOH . P 6 HOH A 2 1002 9 HOH HOH . P 6 HOH A 3 1003 19 HOH HOH . P 6 HOH A 4 1004 14 HOH HOH . P 6 HOH A 5 1005 6 HOH HOH . P 6 HOH A 6 1006 25 HOH HOH . P 6 HOH A 7 1007 8 HOH HOH . P 6 HOH A 8 1008 26 HOH HOH . P 6 HOH A 9 1009 5 HOH HOH . P 6 HOH A 10 1010 1 HOH HOH . P 6 HOH A 11 1011 7 HOH HOH . P 6 HOH A 12 1012 27 HOH HOH . Q 6 HOH B 1 1001 10 HOH HOH . Q 6 HOH B 2 1002 16 HOH HOH . Q 6 HOH B 3 1003 18 HOH HOH . Q 6 HOH B 4 1004 21 HOH HOH . Q 6 HOH B 5 1005 22 HOH HOH . Q 6 HOH B 6 1006 2 HOH HOH . Q 6 HOH B 7 1007 20 HOH HOH . R 6 HOH C 1 1001 4 HOH HOH . R 6 HOH C 2 1002 24 HOH HOH . R 6 HOH C 3 1003 23 HOH HOH . R 6 HOH C 4 1004 3 HOH HOH . R 6 HOH C 5 1005 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA TMO . . . L 2 -44.278 -32.297 -55.993 1 71.57 ? CAA TMO 901 C 1 HETATM 2 N NAC TMO . . . L 2 -44.045 -32.729 -57.383 1 70.78 ? NAC TMO 901 C 1 HETATM 3 C CAD TMO . . . L 2 -43.353 -34.012 -57.373 1 70.69 ? CAD TMO 901 C 1 HETATM 4 C CAB TMO . . . L 2 -45.304 -32.893 -58.149 1 70.12 ? CAB TMO 901 C 1 HETATM 5 O OAE TMO . . . L 2 -43.301 -31.895 -57.943 1 70.12 ? OAE TMO 901 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #