data_7A3J
#
_model_server_result.job_id            qAU2FML89u4iejiprwlOtw 
_model_server_result.datetime_utc      '2024-12-12 21:30:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7a3j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":901}' 
#
_entry.id    7A3J 
#
_exptl.entry_id    7A3J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              457.607 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-ethyl-2-methanoyl-~{N}-[3-[[4-(naphthalen-1-ylmethyl)piperazin-1-yl]methyl]phenyl]butanamide 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7A3J 
_cell.length_a            164.377 
_cell.length_b            252.959 
_cell.length_c            260.869 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7A3J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J,K,L,M,O 1 1 
B,G,H,I,N 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 G N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 755 C SER 755 1_555 D C6 QXK . C QXK 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale2 B OG SER 755 A SER 755 1_555 G C6 QXK . A QXK 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale3 C OG SER 755 B SER 755 1_555 J C6 QXK . B QXK 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
#
_chem_comp.formula           'C29 H35 N3 O2' 
_chem_comp.formula_weight    457.607 
_chem_comp.id                QXK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-ethyl-2-methanoyl-~{N}-[3-[[4-(naphthalen-1-ylmethyl)piperazin-1-yl]methyl]phenyl]butanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O7 C6 QXK doub 277 n n 
C6 C1 QXK sing 278 n n 
O9 C8 QXK doub 279 n n 
C5 C4 QXK sing 280 n n 
C1 C2 QXK sing 281 n n 
C1 C8 QXK sing 282 n n 
C1 C4 QXK sing 283 n n 
C2 C3 QXK sing 284 n n 
C8 N10 QXK sing 285 n n 
C24 C23 QXK doub 286 n y 
C24 C25 QXK sing 287 n y 
C23 C22 QXK sing 288 n y 
C20 C19 QXK sing 289 n n 
C20 N9 QXK sing 290 n n 
C7 N9 QXK sing 291 n n 
C7 C13 QXK sing 292 n n 
N10 C11 QXK sing 293 n n 
C12 C11 QXK doub 294 n y 
C12 C13 QXK sing 295 n y 
C10 N9 QXK sing 296 n n 
C10 C17 QXK sing 297 n n 
N18 C19 QXK sing 298 n n 
N18 C17 QXK sing 299 n n 
N18 C21 QXK sing 300 n n 
C25 C26 QXK doub 301 n y 
C11 C16 QXK sing 302 n y 
C13 C14 QXK doub 303 n y 
C22 C21 QXK sing 304 n n 
C22 C27 QXK doub 305 n y 
C26 C27 QXK sing 306 n y 
C26 C29 QXK sing 307 n y 
C27 C9 QXK sing 308 n y 
C16 C15 QXK doub 309 n y 
C14 C15 QXK sing 310 n y 
C29 C28 QXK doub 311 n y 
C9 C18 QXK doub 312 n y 
C28 C18 QXK sing 313 n y 
C2 H1 QXK sing 314 n n 
C2 H2 QXK sing 315 n n 
C3 H3 QXK sing 316 n n 
C3 H4 QXK sing 317 n n 
C3 H5 QXK sing 318 n n 
C4 H6 QXK sing 319 n n 
C4 H7 QXK sing 320 n n 
C5 H8 QXK sing 321 n n 
C5 H9 QXK sing 322 n n 
C5 H10 QXK sing 323 n n 
C6 H11 QXK sing 324 n n 
C12 H12 QXK sing 325 n n 
C14 H13 QXK sing 326 n n 
C15 H14 QXK sing 327 n n 
C16 H15 QXK sing 328 n n 
C17 H16 QXK sing 329 n n 
C17 H17 QXK sing 330 n n 
C18 H18 QXK sing 331 n n 
N10 H19 QXK sing 332 n n 
C7 H20 QXK sing 333 n n 
C7 H21 QXK sing 334 n n 
C10 H23 QXK sing 335 n n 
C10 H24 QXK sing 336 n n 
C19 H26 QXK sing 337 n n 
C19 H27 QXK sing 338 n n 
C20 H28 QXK sing 339 n n 
C20 H29 QXK sing 340 n n 
C21 H30 QXK sing 341 n n 
C21 H31 QXK sing 342 n n 
C23 H32 QXK sing 343 n n 
C24 H33 QXK sing 344 n n 
C25 H34 QXK sing 345 n n 
C9 H35 QXK sing 346 n n 
C28 H36 QXK sing 347 n n 
C29 H37 QXK sing 348 n n 
#
_atom_sites.entry_id                     7A3J 
_atom_sites.fract_transf_matrix[1][1]    0.006084 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003953 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003833 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 QXK C 1 901 901 QXK 272 . 
E 3 TMO C 1 902 3 TMO TMO . 
F 4 CL C 1 903 1 CL CL . 
G 2 QXK A 1 901 901 QXK 272 . 
H 3 TMO A 1 902 1 TMO TMO . 
I 4 CL A 1 903 2 CL CL . 
J 2 QXK B 1 901 901 QXK 272 . 
K 3 TMO B 1 902 2 TMO TMO . 
L 4 CL B 1 903 3 CL CL . 
M 5 HOH C 1 1001 5 HOH HOH . 
M 5 HOH C 2 1002 2 HOH HOH . 
M 5 HOH C 3 1003 14 HOH HOH . 
M 5 HOH C 4 1004 20 HOH HOH . 
M 5 HOH C 5 1005 12 HOH HOH . 
M 5 HOH C 6 1006 16 HOH HOH . 
M 5 HOH C 7 1007 11 HOH HOH . 
N 5 HOH A 1 1001 1 HOH HOH . 
N 5 HOH A 2 1002 6 HOH HOH . 
N 5 HOH A 3 1003 17 HOH HOH . 
N 5 HOH A 4 1004 15 HOH HOH . 
N 5 HOH A 5 1005 26 HOH HOH . 
N 5 HOH A 6 1006 27 HOH HOH . 
N 5 HOH A 7 1007 9 HOH HOH . 
N 5 HOH A 8 1008 21 HOH HOH . 
N 5 HOH A 9 1009 3 HOH HOH . 
N 5 HOH A 10 1010 4 HOH HOH . 
N 5 HOH A 11 1011 25 HOH HOH . 
O 5 HOH B 1 1001 18 HOH HOH . 
O 5 HOH B 2 1002 7 HOH HOH . 
O 5 HOH B 3 1003 24 HOH HOH . 
O 5 HOH B 4 1004 10 HOH HOH . 
O 5 HOH B 5 1005 13 HOH HOH . 
O 5 HOH B 6 1006 19 HOH HOH . 
O 5 HOH B 7 1007 8 HOH HOH . 
O 5 HOH B 8 1008 23 HOH HOH . 
O 5 HOH B 9 1009 28 HOH HOH . 
O 5 HOH B 10 1010 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 QXK . . . G 2 33.08 -15.396 -8.921 1 114.53 ? C1 QXK 901 A 1 
HETATM 2 C C2 QXK . . . G 2 34.251 -16.397 -8.812 1 119.81 ? C2 QXK 901 A 1 
HETATM 3 C C3 QXK . . . G 2 34.407 -17.105 -7.474 1 123.43 ? C3 QXK 901 A 1 
HETATM 4 C C4 QXK . . . G 2 33.386 -14.061 -8.224 1 111.77 ? C4 QXK 901 A 1 
HETATM 5 C C5 QXK . . . G 2 34.361 -13.14 -8.943 1 110.71 ? C5 QXK 901 A 1 
HETATM 6 C C6 QXK . . . G 2 32.809 -15.093 -10.377 1 106.28 ? C6 QXK 901 A 1 
HETATM 7 C C12 QXK . . . G 2 29.562 -17.5 -7.041 1 139.56 ? C12 QXK 901 A 1 
HETATM 8 C C13 QXK . . . G 2 28.506 -18.08 -6.349 1 139.19 ? C13 QXK 901 A 1 
HETATM 9 C C14 QXK . . . G 2 28.238 -17.697 -5.027 1 135.15 ? C14 QXK 901 A 1 
HETATM 10 C C15 QXK . . . G 2 29.038 -16.729 -4.417 1 131.86 ? C15 QXK 901 A 1 
HETATM 11 C C16 QXK . . . G 2 30.099 -16.15 -5.122 1 136.45 ? C16 QXK 901 A 1 
HETATM 12 C C17 QXK . . . G 2 24.165 -18.118 -6.371 1 128.85 ? C17 QXK 901 A 1 
HETATM 13 C C18 QXK . . . G 2 20.021 -17.457 -2.778 1 122.14 ? C18 QXK 901 A 1 
HETATM 14 O O7 QXK . . . G 2 33.35 -15.697 -11.29 1 111.4 ? O7 QXK 901 A 1 
HETATM 15 C C8 QXK . . . G 2 31.86 -16.123 -8.365 1 119.78 ? C8 QXK 901 A 1 
HETATM 16 O O9 QXK . . . G 2 31.352 -16.93 -9.124 1 116.94 ? O9 QXK 901 A 1 
HETATM 17 N N10 QXK . . . G 2 31.442 -15.913 -7.087 1 130.32 ? N10 QXK 901 A 1 
HETATM 18 C C11 QXK . . . G 2 30.384 -16.524 -6.451 1 136.9 ? C11 QXK 901 A 1 
HETATM 19 C C7 QXK . . . G 2 27.701 -19.119 -7.108 1 138.07 ? C7 QXK 901 A 1 
HETATM 20 N N9 QXK . . . G 2 26.309 -19.219 -6.656 1 136.43 ? N9 QXK 901 A 1 
HETATM 21 C C10 QXK . . . G 2 25.535 -18.021 -7.022 1 132.95 ? C10 QXK 901 A 1 
HETATM 22 N N18 QXK . . . G 2 23.459 -19.344 -6.798 1 125.62 ? N18 QXK 901 A 1 
HETATM 23 C C19 QXK . . . G 2 24.285 -20.567 -6.701 1 132.44 ? C19 QXK 901 A 1 
HETATM 24 C C20 QXK . . . G 2 25.677 -20.384 -7.291 1 135.19 ? C20 QXK 901 A 1 
HETATM 25 C C21 QXK . . . G 2 22.275 -19.553 -5.95 1 124.47 ? C21 QXK 901 A 1 
HETATM 26 C C22 QXK . . . G 2 21.196 -18.505 -6.176 1 124.59 ? C22 QXK 901 A 1 
HETATM 27 C C23 QXK . . . G 2 20.883 -18.187 -7.508 1 126.56 ? C23 QXK 901 A 1 
HETATM 28 C C24 QXK . . . G 2 19.899 -17.246 -7.81 1 126.79 ? C24 QXK 901 A 1 
HETATM 29 C C25 QXK . . . G 2 19.212 -16.613 -6.783 1 128.75 ? C25 QXK 901 A 1 
HETATM 30 C C26 QXK . . . G 2 19.508 -16.918 -5.453 1 126.14 ? C26 QXK 901 A 1 
HETATM 31 C C27 QXK . . . G 2 20.5 -17.865 -5.127 1 121.06 ? C27 QXK 901 A 1 
HETATM 32 C C9 QXK . . . G 2 20.746 -18.114 -3.767 1 118.51 ? C9 QXK 901 A 1 
HETATM 33 C C28 QXK . . . G 2 19.051 -16.528 -3.117 1 125.19 ? C28 QXK 901 A 1 
HETATM 34 C C29 QXK . . . G 2 18.791 -16.259 -4.454 1 126.63 ? C29 QXK 901 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           34 
#