data_7A3J # _model_server_result.job_id DEUr1j4bfQSWyYBYdCwedA _model_server_result.datetime_utc '2024-12-12 21:26:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a3j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":902}' # _entry.id 7A3J # _exptl.entry_id 7A3J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.11 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'trimethylamine oxide' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7A3J _cell.length_a 164.377 _cell.length_b 252.959 _cell.length_c 260.869 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A3J _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J,K,L,M,O 1 1 B,G,H,I,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 755 C SER 755 1_555 D C6 QXK . C QXK 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 B OG SER 755 A SER 755 1_555 G C6 QXK . A QXK 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C OG SER 755 B SER 755 1_555 J C6 QXK . B QXK 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? # _chem_comp.formula 'C3 H9 N O' _chem_comp.formula_weight 75.11 _chem_comp.id TMO _chem_comp.mon_nstd_flag . _chem_comp.name 'trimethylamine oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA NAC TMO sing 378 n n CAA HAA TMO sing 379 n n CAA HAAA TMO sing 380 n n CAA HAAB TMO sing 381 n n NAC CAD TMO sing 382 n n NAC CAB TMO sing 383 n n NAC OAE TMO sing 384 n n CAD HAD TMO sing 385 n n CAD HADA TMO sing 386 n n CAD HADB TMO sing 387 n n CAB HAB TMO sing 388 n n CAB HABA TMO sing 389 n n CAB HABB TMO sing 390 n n # _atom_sites.entry_id 7A3J _atom_sites.fract_transf_matrix[1][1] 0.006084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 QXK C 1 901 901 QXK 272 . E 3 TMO C 1 902 3 TMO TMO . F 4 CL C 1 903 1 CL CL . G 2 QXK A 1 901 901 QXK 272 . H 3 TMO A 1 902 1 TMO TMO . I 4 CL A 1 903 2 CL CL . J 2 QXK B 1 901 901 QXK 272 . K 3 TMO B 1 902 2 TMO TMO . L 4 CL B 1 903 3 CL CL . M 5 HOH C 1 1001 5 HOH HOH . M 5 HOH C 2 1002 2 HOH HOH . M 5 HOH C 3 1003 14 HOH HOH . M 5 HOH C 4 1004 20 HOH HOH . M 5 HOH C 5 1005 12 HOH HOH . M 5 HOH C 6 1006 16 HOH HOH . M 5 HOH C 7 1007 11 HOH HOH . N 5 HOH A 1 1001 1 HOH HOH . N 5 HOH A 2 1002 6 HOH HOH . N 5 HOH A 3 1003 17 HOH HOH . N 5 HOH A 4 1004 15 HOH HOH . N 5 HOH A 5 1005 26 HOH HOH . N 5 HOH A 6 1006 27 HOH HOH . N 5 HOH A 7 1007 9 HOH HOH . N 5 HOH A 8 1008 21 HOH HOH . N 5 HOH A 9 1009 3 HOH HOH . N 5 HOH A 10 1010 4 HOH HOH . N 5 HOH A 11 1011 25 HOH HOH . O 5 HOH B 1 1001 18 HOH HOH . O 5 HOH B 2 1002 7 HOH HOH . O 5 HOH B 3 1003 24 HOH HOH . O 5 HOH B 4 1004 10 HOH HOH . O 5 HOH B 5 1005 13 HOH HOH . O 5 HOH B 6 1006 19 HOH HOH . O 5 HOH B 7 1007 8 HOH HOH . O 5 HOH B 8 1008 23 HOH HOH . O 5 HOH B 9 1009 28 HOH HOH . O 5 HOH B 10 1010 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA TMO . . . E 3 43.818 34.044 -57.757 1 90.27 ? CAA TMO 902 C 1 HETATM 2 N NAC TMO . . . E 3 44.494 32.758 -57.597 1 92.68 ? NAC TMO 902 C 1 HETATM 3 C CAD TMO . . . E 3 45.402 32.537 -58.744 1 92.11 ? CAD TMO 902 C 1 HETATM 4 C CAB TMO . . . E 3 45.257 32.729 -56.336 1 92.03 ? CAB TMO 902 C 1 HETATM 5 O OAE TMO . . . E 3 43.61 31.874 -57.558 1 95.64 ? OAE TMO 902 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 713 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 5 #