data_7A3K
#
_model_server_result.job_id            L2YLZ16c3jtpz0XAXtAw8Q 
_model_server_result.datetime_utc      '2024-11-23 09:06:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7a3k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":906}' 
#
_entry.id    7A3K 
#
_exptl.entry_id    7A3K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7A3K 
_cell.length_a            163.264 
_cell.length_b            250.38 
_cell.length_c            261.202 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7A3K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,P,Q,R,S,T,U,W 1 1 
B,K,L,M,N,O,V 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 N N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 278 C ASP 278 1_555 I NA NA . C NA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc2 B O GLN 274 A GLN 274 1_555 N NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? 
metalc ? metalc3 B OD1 ASP 278 A ASP 278 1_555 N NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? 
metalc ? metalc4 B OH TYR 280 A TYR 280 1_555 N NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? 
metalc ? metalc5 N NA NA . A NA 904 1_555 V O HOH . A HOH 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc6 C OD1 ASP 278 B ASP 278 1_555 S NA NA . B NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? 
metalc ? metalc7 C OH TYR 280 B TYR 280 1_555 S NA NA . B NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7A3K 
_atom_sites.fract_transf_matrix[1][1]    0.006125 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003994 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003828 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 TMO C 1 901 3 TMO TMO . 
E 3 CL C 1 902 3 CL CL . 
F 3 CL C 1 903 8 CL CL . 
G 3 CL C 1 904 9 CL CL . 
H 3 CL C 1 905 12 CL CL . 
I 4 NA C 1 906 3 NA NA . 
J 5 QX8 C 1 907 3 QX8 296 . 
K 2 TMO A 1 901 1 TMO TMO . 
L 3 CL A 1 902 2 CL CL . 
M 3 CL A 1 903 10 CL CL . 
N 4 NA A 1 904 1 NA NA . 
O 5 QX8 A 1 905 1 QX8 296 . 
P 2 TMO B 1 901 2 TMO TMO . 
Q 3 CL B 1 902 1 CL CL . 
R 3 CL B 1 903 11 CL CL . 
S 4 NA B 1 904 2 NA NA . 
T 5 QX8 B 1 905 2 QX8 296 . 
U 6 HOH C 1 1001 18 HOH HOH . 
U 6 HOH C 2 1002 236 HOH HOH . 
U 6 HOH C 3 1003 286 HOH HOH . 
U 6 HOH C 4 1004 48 HOH HOH . 
U 6 HOH C 5 1005 189 HOH HOH . 
U 6 HOH C 6 1006 60 HOH HOH . 
U 6 HOH C 7 1007 38 HOH HOH . 
U 6 HOH C 8 1008 45 HOH HOH . 
U 6 HOH C 9 1009 126 HOH HOH . 
U 6 HOH C 10 1010 93 HOH HOH . 
U 6 HOH C 11 1011 7 HOH HOH . 
U 6 HOH C 12 1012 275 HOH HOH . 
U 6 HOH C 13 1013 80 HOH HOH . 
U 6 HOH C 14 1014 122 HOH HOH . 
U 6 HOH C 15 1015 246 HOH HOH . 
U 6 HOH C 16 1016 160 HOH HOH . 
U 6 HOH C 17 1017 79 HOH HOH . 
U 6 HOH C 18 1018 188 HOH HOH . 
U 6 HOH C 19 1019 212 HOH HOH . 
U 6 HOH C 20 1020 213 HOH HOH . 
U 6 HOH C 21 1021 200 HOH HOH . 
U 6 HOH C 22 1022 95 HOH HOH . 
U 6 HOH C 23 1023 227 HOH HOH . 
U 6 HOH C 24 1024 97 HOH HOH . 
U 6 HOH C 25 1025 214 HOH HOH . 
U 6 HOH C 26 1026 53 HOH HOH . 
U 6 HOH C 27 1027 36 HOH HOH . 
U 6 HOH C 28 1028 225 HOH HOH . 
U 6 HOH C 29 1029 208 HOH HOH . 
U 6 HOH C 30 1030 139 HOH HOH . 
U 6 HOH C 31 1031 267 HOH HOH . 
U 6 HOH C 32 1032 96 HOH HOH . 
U 6 HOH C 33 1033 159 HOH HOH . 
U 6 HOH C 34 1034 252 HOH HOH . 
U 6 HOH C 35 1035 241 HOH HOH . 
U 6 HOH C 36 1036 27 HOH HOH . 
U 6 HOH C 37 1037 116 HOH HOH . 
U 6 HOH C 38 1038 224 HOH HOH . 
U 6 HOH C 39 1039 88 HOH HOH . 
U 6 HOH C 40 1040 238 HOH HOH . 
U 6 HOH C 41 1041 237 HOH HOH . 
U 6 HOH C 42 1042 112 HOH HOH . 
U 6 HOH C 43 1043 293 HOH HOH . 
U 6 HOH C 44 1044 216 HOH HOH . 
U 6 HOH C 45 1045 276 HOH HOH . 
U 6 HOH C 46 1046 277 HOH HOH . 
U 6 HOH C 47 1047 40 HOH HOH . 
U 6 HOH C 48 1048 299 HOH HOH . 
V 6 HOH A 1 1001 108 HOH HOH . 
V 6 HOH A 2 1002 199 HOH HOH . 
V 6 HOH A 3 1003 231 HOH HOH . 
V 6 HOH A 4 1004 69 HOH HOH . 
V 6 HOH A 5 1005 89 HOH HOH . 
V 6 HOH A 6 1006 47 HOH HOH . 
V 6 HOH A 7 1007 184 HOH HOH . 
V 6 HOH A 8 1008 211 HOH HOH . 
V 6 HOH A 9 1009 24 HOH HOH . 
V 6 HOH A 10 1010 20 HOH HOH . 
V 6 HOH A 11 1011 110 HOH HOH . 
V 6 HOH A 12 1012 87 HOH HOH . 
V 6 HOH A 13 1013 68 HOH HOH . 
V 6 HOH A 14 1014 133 HOH HOH . 
V 6 HOH A 15 1015 173 HOH HOH . 
V 6 HOH A 16 1016 14 HOH HOH . 
V 6 HOH A 17 1017 205 HOH HOH . 
V 6 HOH A 18 1018 202 HOH HOH . 
V 6 HOH A 19 1019 85 HOH HOH . 
V 6 HOH A 20 1020 13 HOH HOH . 
V 6 HOH A 21 1021 157 HOH HOH . 
V 6 HOH A 22 1022 154 HOH HOH . 
V 6 HOH A 23 1023 162 HOH HOH . 
V 6 HOH A 24 1024 273 HOH HOH . 
V 6 HOH A 25 1025 117 HOH HOH . 
V 6 HOH A 26 1026 39 HOH HOH . 
V 6 HOH A 27 1027 272 HOH HOH . 
V 6 HOH A 28 1028 166 HOH HOH . 
V 6 HOH A 29 1029 56 HOH HOH . 
V 6 HOH A 30 1030 183 HOH HOH . 
V 6 HOH A 31 1031 142 HOH HOH . 
V 6 HOH A 32 1032 262 HOH HOH . 
V 6 HOH A 33 1033 165 HOH HOH . 
V 6 HOH A 34 1034 187 HOH HOH . 
V 6 HOH A 35 1035 31 HOH HOH . 
V 6 HOH A 36 1036 182 HOH HOH . 
V 6 HOH A 37 1037 152 HOH HOH . 
V 6 HOH A 38 1038 134 HOH HOH . 
V 6 HOH A 39 1039 137 HOH HOH . 
V 6 HOH A 40 1040 150 HOH HOH . 
V 6 HOH A 41 1041 151 HOH HOH . 
V 6 HOH A 42 1042 148 HOH HOH . 
V 6 HOH A 43 1043 235 HOH HOH . 
V 6 HOH A 44 1044 180 HOH HOH . 
V 6 HOH A 45 1045 75 HOH HOH . 
V 6 HOH A 46 1046 128 HOH HOH . 
V 6 HOH A 47 1047 178 HOH HOH . 
V 6 HOH A 48 1048 254 HOH HOH . 
V 6 HOH A 49 1049 16 HOH HOH . 
V 6 HOH A 50 1050 170 HOH HOH . 
V 6 HOH A 51 1051 10 HOH HOH . 
V 6 HOH A 52 1052 209 HOH HOH . 
V 6 HOH A 53 1053 300 HOH HOH . 
V 6 HOH A 54 1054 67 HOH HOH . 
V 6 HOH A 55 1055 268 HOH HOH . 
V 6 HOH A 56 1056 226 HOH HOH . 
V 6 HOH A 57 1057 232 HOH HOH . 
V 6 HOH A 58 1058 264 HOH HOH . 
V 6 HOH A 59 1059 30 HOH HOH . 
V 6 HOH A 60 1060 279 HOH HOH . 
V 6 HOH A 61 1061 145 HOH HOH . 
V 6 HOH A 62 1062 292 HOH HOH . 
V 6 HOH A 63 1063 76 HOH HOH . 
V 6 HOH A 64 1064 229 HOH HOH . 
V 6 HOH A 65 1065 295 HOH HOH . 
V 6 HOH A 66 1066 244 HOH HOH . 
V 6 HOH A 67 1067 294 HOH HOH . 
V 6 HOH A 68 1068 291 HOH HOH . 
V 6 HOH A 69 1069 282 HOH HOH . 
W 6 HOH B 1 1001 59 HOH HOH . 
W 6 HOH B 2 1002 62 HOH HOH . 
W 6 HOH B 3 1003 52 HOH HOH . 
W 6 HOH B 4 1004 12 HOH HOH . 
W 6 HOH B 5 1005 111 HOH HOH . 
W 6 HOH B 6 1006 11 HOH HOH . 
W 6 HOH B 7 1007 191 HOH HOH . 
W 6 HOH B 8 1008 42 HOH HOH . 
W 6 HOH B 9 1009 105 HOH HOH . 
W 6 HOH B 10 1010 130 HOH HOH . 
W 6 HOH B 11 1011 78 HOH HOH . 
W 6 HOH B 12 1012 107 HOH HOH . 
W 6 HOH B 13 1013 41 HOH HOH . 
W 6 HOH B 14 1014 138 HOH HOH . 
W 6 HOH B 15 1015 63 HOH HOH . 
W 6 HOH B 16 1016 274 HOH HOH . 
W 6 HOH B 17 1017 98 HOH HOH . 
W 6 HOH B 18 1018 8 HOH HOH . 
W 6 HOH B 19 1019 271 HOH HOH . 
W 6 HOH B 20 1020 197 HOH HOH . 
W 6 HOH B 21 1021 140 HOH HOH . 
W 6 HOH B 22 1022 109 HOH HOH . 
W 6 HOH B 23 1023 181 HOH HOH . 
W 6 HOH B 24 1024 260 HOH HOH . 
W 6 HOH B 25 1025 33 HOH HOH . 
W 6 HOH B 26 1026 230 HOH HOH . 
W 6 HOH B 27 1027 73 HOH HOH . 
W 6 HOH B 28 1028 141 HOH HOH . 
W 6 HOH B 29 1029 257 HOH HOH . 
W 6 HOH B 30 1030 147 HOH HOH . 
W 6 HOH B 31 1031 217 HOH HOH . 
W 6 HOH B 32 1032 17 HOH HOH . 
W 6 HOH B 33 1033 164 HOH HOH . 
W 6 HOH B 34 1034 186 HOH HOH . 
W 6 HOH B 35 1035 101 HOH HOH . 
W 6 HOH B 36 1036 77 HOH HOH . 
W 6 HOH B 37 1037 169 HOH HOH . 
W 6 HOH B 38 1038 23 HOH HOH . 
W 6 HOH B 39 1039 124 HOH HOH . 
W 6 HOH B 40 1040 153 HOH HOH . 
W 6 HOH B 41 1041 57 HOH HOH . 
W 6 HOH B 42 1042 129 HOH HOH . 
W 6 HOH B 43 1043 135 HOH HOH . 
W 6 HOH B 44 1044 102 HOH HOH . 
W 6 HOH B 45 1045 28 HOH HOH . 
W 6 HOH B 46 1046 301 HOH HOH . 
W 6 HOH B 47 1047 234 HOH HOH . 
W 6 HOH B 48 1048 185 HOH HOH . 
W 6 HOH B 49 1049 156 HOH HOH . 
W 6 HOH B 50 1050 284 HOH HOH . 
W 6 HOH B 51 1051 136 HOH HOH . 
W 6 HOH B 52 1052 51 HOH HOH . 
W 6 HOH B 53 1053 243 HOH HOH . 
W 6 HOH B 54 1054 255 HOH HOH . 
W 6 HOH B 55 1055 297 HOH HOH . 
W 6 HOH B 56 1056 190 HOH HOH . 
W 6 HOH B 57 1057 81 HOH HOH . 
W 6 HOH B 58 1058 198 HOH HOH . 
W 6 HOH B 59 1059 296 HOH HOH . 
W 6 HOH B 60 1060 103 HOH HOH . 
W 6 HOH B 61 1061 9 HOH HOH . 
W 6 HOH B 62 1062 278 HOH HOH . 
W 6 HOH B 63 1063 288 HOH HOH . 
W 6 HOH B 64 1064 285 HOH HOH . 
W 6 HOH B 65 1065 281 HOH HOH . 
W 6 HOH B 66 1066 298 HOH HOH . 
W 6 HOH B 67 1067 287 HOH HOH . 
W 6 HOH B 68 1068 289 HOH HOH . 
W 6 HOH B 69 1069 6 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -39.966 
_atom_site.Cartn_y               -23.682 
_atom_site.Cartn_z               -55.403 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        79.69 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           906 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#