data_7A3L
#
_model_server_result.job_id            gVgxBdCrEGIZHO517vqttQ 
_model_server_result.datetime_utc      '2024-11-18 06:44:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7a3l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":903}' 
#
_entry.id    7A3L 
#
_exptl.entry_id    7A3L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              75.11 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'trimethylamine oxide' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7A3L 
_cell.length_a            164.034 
_cell.length_b            252.779 
_cell.length_c            261.235 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7A3L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,T 1 1,2 
B,C,I,J,K,L,M,N,O,P,Q,R,S,U,V 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 K N N 
? 4 L N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 755 A SER 755 1_555 D C6 QXN . A QXN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 B OG SER 755 B SER 755 1_555 I C6 QXN . B QXN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale3 C OG SER 755 C SER 755 1_555 O C6 QXN . C QXN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
#
_chem_comp.formula           'C3 H9 N O' 
_chem_comp.formula_weight    75.11 
_chem_comp.id                TMO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'trimethylamine oxide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA NAC TMO sing 373 n n 
CAA HAA TMO sing 374 n n 
CAA HAAA TMO sing 375 n n 
CAA HAAB TMO sing 376 n n 
NAC CAD TMO sing 377 n n 
NAC CAB TMO sing 378 n n 
NAC OAE TMO sing 379 n n 
CAD HAD TMO sing 380 n n 
CAD HADA TMO sing 381 n n 
CAD HADB TMO sing 382 n n 
CAB HAB TMO sing 383 n n 
CAB HABA TMO sing 384 n n 
CAB HABB TMO sing 385 n n 
#
_atom_sites.entry_id                     7A3L 
_atom_sites.fract_transf_matrix[1][1]    0.006096 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003956 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003828 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 QXN A 1 901 901 QXN 241 . 
E 3 GOL A 1 902 1001 GOL GOL . 
F 4 TMO A 1 903 1101 TMO TMO . 
G 3 GOL A 1 904 1201 GOL GOL . 
H 5 CL A 1 905 1 CL CL . 
I 2 QXN B 1 901 901 QXN 241 . 
J 3 GOL B 1 902 1001 GOL GOL . 
K 4 TMO B 1 903 1401 TMO TMO . 
L 4 TMO B 1 904 1501 TMO TMO . 
M 3 GOL B 1 905 1601 GOL GOL . 
N 5 CL B 1 906 2 CL CL . 
O 2 QXN C 1 901 901 QXN 241 . 
P 3 GOL C 1 902 1001 GOL GOL . 
Q 4 TMO C 1 903 1101 TMO TMO . 
R 3 GOL C 1 904 1201 GOL GOL . 
S 5 CL C 1 905 3 CL CL . 
T 6 HOH A 1 1001 43 HOH HOH . 
T 6 HOH A 2 1002 28 HOH HOH . 
T 6 HOH A 3 1003 12 HOH HOH . 
T 6 HOH A 4 1004 30 HOH HOH . 
T 6 HOH A 5 1005 13 HOH HOH . 
T 6 HOH A 6 1006 11 HOH HOH . 
T 6 HOH A 7 1007 22 HOH HOH . 
T 6 HOH A 8 1008 29 HOH HOH . 
T 6 HOH A 9 1009 27 HOH HOH . 
T 6 HOH A 10 1010 38 HOH HOH . 
T 6 HOH A 11 1011 44 HOH HOH . 
T 6 HOH A 12 1012 24 HOH HOH . 
T 6 HOH A 13 1013 4 HOH HOH . 
T 6 HOH A 14 1014 23 HOH HOH . 
T 6 HOH A 15 1015 37 HOH HOH . 
T 6 HOH A 16 1016 21 HOH HOH . 
T 6 HOH A 17 1017 5 HOH HOH . 
U 6 HOH B 1 1001 31 HOH HOH . 
U 6 HOH B 2 1002 8 HOH HOH . 
U 6 HOH B 3 1003 46 HOH HOH . 
U 6 HOH B 4 1004 33 HOH HOH . 
U 6 HOH B 5 1005 14 HOH HOH . 
U 6 HOH B 6 1006 32 HOH HOH . 
U 6 HOH B 7 1007 9 HOH HOH . 
U 6 HOH B 8 1008 10 HOH HOH . 
U 6 HOH B 9 1009 45 HOH HOH . 
U 6 HOH B 10 1010 25 HOH HOH . 
U 6 HOH B 11 1011 16 HOH HOH . 
U 6 HOH B 12 1012 7 HOH HOH . 
U 6 HOH B 13 1013 35 HOH HOH . 
U 6 HOH B 14 1014 17 HOH HOH . 
U 6 HOH B 15 1015 15 HOH HOH . 
U 6 HOH B 16 1016 3 HOH HOH . 
V 6 HOH C 1 1001 42 HOH HOH . 
V 6 HOH C 2 1002 34 HOH HOH . 
V 6 HOH C 3 1003 40 HOH HOH . 
V 6 HOH C 4 1004 47 HOH HOH . 
V 6 HOH C 5 1005 48 HOH HOH . 
V 6 HOH C 6 1006 39 HOH HOH . 
V 6 HOH C 7 1007 41 HOH HOH . 
V 6 HOH C 8 1008 26 HOH HOH . 
V 6 HOH C 9 1009 18 HOH HOH . 
V 6 HOH C 10 1010 36 HOH HOH . 
V 6 HOH C 11 1011 19 HOH HOH . 
V 6 HOH C 12 1012 20 HOH HOH . 
V 6 HOH C 13 1013 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA TMO . . . F 4 22.693 20.103 6.881 1 88.19 ? CAA TMO 903 A 1 
HETATM 2 N NAC TMO . . . F 4 22.946 18.79 6.264 1 90.55 ? NAC TMO 903 A 1 
HETATM 3 C CAD TMO . . . F 4 23.977 18.088 7.045 1 87.52 ? CAD TMO 903 A 1 
HETATM 4 C CAB TMO . . . F 4 21.681 18.033 6.235 1 89.33 ? CAB TMO 903 A 1 
HETATM 5 O OAE TMO . . . F 4 23.367 18.925 5.091 1 89.21 ? OAE TMO 903 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#