data_7A3Q
#
_model_server_result.job_id            DG7GIOoLagF4QPN15QSdwA 
_model_server_result.datetime_utc      '2024-11-22 22:27:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7a3q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1001}' 
#
_entry.id    7A3Q 
#
_exptl.entry_id    7A3Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.15 
_cell.angle_gamma         90 
_cell.entry_id            7A3Q 
_cell.length_a            65.985 
_cell.length_b            133.18 
_cell.length_c            93.536 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7A3Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 60 A CYS 60 1_555 A SG CYS 121 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 A SG CYS 74 A CYS 74 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf4 A SG CYS 92 A CYS 92 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf5 A SG CYS 185 A CYS 185 1_555 A SG CYS 285 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 A SG CYS 302 A CYS 302 1_555 A SG CYS 333 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf7 B SG CYS 3 B CYS 3 1_555 B SG CYS 30 B CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 B SG CYS 60 B CYS 60 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf9 B SG CYS 74 B CYS 74 1_555 B SG CYS 105 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf10 B SG CYS 92 B CYS 92 1_555 B SG CYS 116 B CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf11 B SG CYS 185 B CYS 185 1_555 B SG CYS 285 B CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 B SG CYS 302 B CYS 302 1_555 B SG CYS 333 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf13 C SG CYS 24 H CYS 22 1_555 C SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf14 D SG CYS 24 I CYS 22 1_555 D SG CYS 98 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf15 E SG CYS 28 L CYS 23 1_555 E SG CYS 96 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf16 F SG CYS 28 M CYS 23 1_555 F SG CYS 96 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 67 A ASN 67 1_555 G C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale2 B ND2 ASN 67 B ASN 67 1_555 H C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 271 n n 
C1 O1 NAG sing 272 n n 
C1 O5 NAG sing 273 n n 
C1 H1 NAG sing 274 n n 
C2 C3 NAG sing 275 n n 
C2 N2 NAG sing 276 n n 
C2 H2 NAG sing 277 n n 
C3 C4 NAG sing 278 n n 
C3 O3 NAG sing 279 n n 
C3 H3 NAG sing 280 n n 
C4 C5 NAG sing 281 n n 
C4 O4 NAG sing 282 n n 
C4 H4 NAG sing 283 n n 
C5 C6 NAG sing 284 n n 
C5 O5 NAG sing 285 n n 
C5 H5 NAG sing 286 n n 
C6 O6 NAG sing 287 n n 
C6 H61 NAG sing 288 n n 
C6 H62 NAG sing 289 n n 
C7 C8 NAG sing 290 n n 
C7 N2 NAG sing 291 n n 
C7 O7 NAG doub 292 n n 
C8 H81 NAG sing 293 n n 
C8 H82 NAG sing 294 n n 
C8 H83 NAG sing 295 n n 
N2 HN2 NAG sing 296 n n 
O1 HO1 NAG sing 297 n n 
O3 HO3 NAG sing 298 n n 
O4 HO4 NAG sing 299 n n 
O6 HO6 NAG sing 300 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7A3Q 
_atom_sites.fract_transf_matrix[1][1]    0.015155 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000569 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007509 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010699 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG A 1 1001 1001 NAG NAG . 
H 4 NAG B 1 1001 1001 NAG NAG . 
I 5 3CX H 1 500 500 3CX 3CX . 
J 5 3CX I 1 500 500 3CX 3CX . 
K 6 HOH A 1 1101 1 HOH HOH . 
K 6 HOH A 2 1102 37 HOH HOH . 
K 6 HOH A 3 1103 36 HOH HOH . 
K 6 HOH A 4 1104 54 HOH HOH . 
K 6 HOH A 5 1105 47 HOH HOH . 
K 6 HOH A 6 1106 53 HOH HOH . 
K 6 HOH A 7 1107 28 HOH HOH . 
K 6 HOH A 8 1108 50 HOH HOH . 
K 6 HOH A 9 1109 29 HOH HOH . 
K 6 HOH A 10 1110 21 HOH HOH . 
K 6 HOH A 11 1111 31 HOH HOH . 
K 6 HOH A 12 1112 19 HOH HOH . 
K 6 HOH A 13 1113 23 HOH HOH . 
K 6 HOH A 14 1114 18 HOH HOH . 
K 6 HOH A 15 1115 22 HOH HOH . 
K 6 HOH A 16 1116 44 HOH HOH . 
L 6 HOH B 1 1101 7 HOH HOH . 
L 6 HOH B 2 1102 9 HOH HOH . 
L 6 HOH B 3 1103 51 HOH HOH . 
L 6 HOH B 4 1104 12 HOH HOH . 
L 6 HOH B 5 1105 52 HOH HOH . 
L 6 HOH B 6 1106 8 HOH HOH . 
L 6 HOH B 7 1107 48 HOH HOH . 
L 6 HOH B 8 1108 25 HOH HOH . 
L 6 HOH B 9 1109 3 HOH HOH . 
L 6 HOH B 10 1110 46 HOH HOH . 
M 6 HOH H 1 601 49 HOH HOH . 
M 6 HOH H 2 602 39 HOH HOH . 
M 6 HOH H 3 603 38 HOH HOH . 
M 6 HOH H 4 604 4 HOH HOH . 
M 6 HOH H 5 605 13 HOH HOH . 
M 6 HOH H 6 606 24 HOH HOH . 
M 6 HOH H 7 607 45 HOH HOH . 
M 6 HOH H 8 608 11 HOH HOH . 
N 6 HOH I 1 601 20 HOH HOH . 
N 6 HOH I 2 602 5 HOH HOH . 
N 6 HOH I 3 603 34 HOH HOH . 
O 6 HOH L 1 201 2 HOH HOH . 
O 6 HOH L 2 202 32 HOH HOH . 
O 6 HOH L 3 203 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 4 122.071 -12.631 319.252 1 112.43 ? C1 NAG 1001 B 1 
HETATM 2 C C2 NAG . . . H 4 121.997 -11.551 320.334 1 113.96 ? C2 NAG 1001 B 1 
HETATM 3 C C3 NAG . . . H 4 123.385 -10.934 320.517 1 114.33 ? C3 NAG 1001 B 1 
HETATM 4 C C4 NAG . . . H 4 124.421 -12.015 320.811 1 114.35 ? C4 NAG 1001 B 1 
HETATM 5 C C5 NAG . . . H 4 124.407 -13.071 319.706 1 113.44 ? C5 NAG 1001 B 1 
HETATM 6 C C6 NAG . . . H 4 125.316 -14.247 319.985 1 112.66 ? C6 NAG 1001 B 1 
HETATM 7 C C7 NAG . . . H 4 119.837 -10.373 320.563 1 115.51 ? C7 NAG 1001 B 1 
HETATM 8 C C8 NAG . . . H 4 118.943 -9.324 319.974 1 115.51 ? C8 NAG 1001 B 1 
HETATM 9 N N2 NAG . . . H 4 121.029 -10.531 319.963 1 114.79 ? N2 NAG 1001 B 1 
HETATM 10 O O3 NAG . . . H 4 123.358 -9.985 321.579 1 114.2 ? O3 NAG 1001 B 1 
HETATM 11 O O4 NAG . . . H 4 125.714 -11.427 320.912 1 114.79 ? O4 NAG 1001 B 1 
HETATM 12 O O5 NAG . . . H 4 123.078 -13.603 319.56 1 113.11 ? O5 NAG 1001 B 1 
HETATM 13 O O6 NAG . . . H 4 125.366 -15.141 318.881 1 112.14 ? O6 NAG 1001 B 1 
HETATM 14 O O7 NAG . . . H 4 119.496 -11.046 321.533 1 115.96 ? O7 NAG 1001 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#