data_7A3S
#
_model_server_result.job_id            Bf2DzyyZe0EysJB_QVi0ZQ 
_model_server_result.datetime_utc      '2024-11-04 20:18:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7a3s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":402}' 
#
_entry.id    7A3S 
#
_exptl.entry_id    7A3S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7A3S 
_cell.length_a            142.03 
_cell.length_b            142.03 
_cell.length_c            159.588 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7A3S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,M 1 1,2 
B,C,G,H,I,J,K,L,N,O 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_435 x-y-1,-y-2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 -246.003176 106.392 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 60 A CYS 60 1_555 A SG CYS 121 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 A SG CYS 74 A CYS 74 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 92 A CYS 92 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 A SG CYS 183 A CYS 183 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 A SG CYS 300 A CYS 300 1_555 A SG CYS 331 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 B SG CYS 3 B CYS 3 1_555 B SG CYS 30 B CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 B SG CYS 60 B CYS 60 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf9 B SG CYS 74 B CYS 74 1_555 B SG CYS 105 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf10 B SG CYS 92 B CYS 92 1_555 B SG CYS 116 B CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf11 B SG CYS 183 B CYS 183 1_555 B SG CYS 283 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 B SG CYS 300 B CYS 300 1_555 B SG CYS 331 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf13 C SG CYS 3 C CYS 3 1_555 C SG CYS 30 C CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 C SG CYS 60 C CYS 60 1_555 C SG CYS 121 C CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf15 C SG CYS 74 C CYS 74 1_555 C SG CYS 105 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf16 C SG CYS 92 C CYS 92 1_555 C SG CYS 116 C CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf17 C SG CYS 183 C CYS 183 1_555 C SG CYS 283 C CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A ND2 ASN 67 A ASN 67 1_555 E C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale2 A ND2 ASN 153 A ASN 153 1_555 F C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale3 B ND2 ASN 67 B ASN 67 1_555 H C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale4 B ND2 ASN 153 B ASN 153 1_555 I C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale5 C ND2 ASN 67 C ASN 67 1_555 K C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale6 C ND2 ASN 153 C ASN 153 1_555 L C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7A3S 
_atom_sites.fract_transf_matrix[1][1]    0.007041 
_atom_sites.fract_transf_matrix[1][2]    0.004065 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00813 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006266 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SO4 A 1 401 500 SO4 SO4 . 
E 3 NAG A 1 402 600 NAG NAG . 
F 3 NAG A 1 403 610 NAG NAG . 
G 2 SO4 B 1 401 500 SO4 SO4 . 
H 3 NAG B 1 402 600 NAG NAG . 
I 3 NAG B 1 403 610 NAG NAG . 
J 2 SO4 C 1 401 500 SO4 SO4 . 
K 3 NAG C 1 402 600 NAG NAG . 
L 3 NAG C 1 403 610 NAG NAG . 
M 4 HOH A 1 501 64 HOH HOH . 
M 4 HOH A 2 502 16 HOH HOH . 
M 4 HOH A 3 503 23 HOH HOH . 
M 4 HOH A 4 504 21 HOH HOH . 
M 4 HOH A 5 505 55 HOH HOH . 
M 4 HOH A 6 506 57 HOH HOH . 
M 4 HOH A 7 507 52 HOH HOH . 
M 4 HOH A 8 508 9 HOH HOH . 
M 4 HOH A 9 509 5 HOH HOH . 
M 4 HOH A 10 510 6 HOH HOH . 
M 4 HOH A 11 511 22 HOH HOH . 
M 4 HOH A 12 512 95 HOH HOH . 
M 4 HOH A 13 513 99 HOH HOH . 
M 4 HOH A 14 514 36 HOH HOH . 
M 4 HOH A 15 515 108 HOH HOH . 
M 4 HOH A 16 516 19 HOH HOH . 
M 4 HOH A 17 517 42 HOH HOH . 
M 4 HOH A 18 518 32 HOH HOH . 
M 4 HOH A 19 519 7 HOH HOH . 
M 4 HOH A 20 520 1 HOH HOH . 
M 4 HOH A 21 521 102 HOH HOH . 
M 4 HOH A 22 522 116 HOH HOH . 
M 4 HOH A 23 523 28 HOH HOH . 
M 4 HOH A 24 524 68 HOH HOH . 
M 4 HOH A 25 525 94 HOH HOH . 
M 4 HOH A 26 526 3 HOH HOH . 
M 4 HOH A 27 527 90 HOH HOH . 
M 4 HOH A 28 528 75 HOH HOH . 
M 4 HOH A 29 529 49 HOH HOH . 
M 4 HOH A 30 530 12 HOH HOH . 
M 4 HOH A 31 531 2 HOH HOH . 
M 4 HOH A 32 532 91 HOH HOH . 
M 4 HOH A 33 533 80 HOH HOH . 
M 4 HOH A 34 534 17 HOH HOH . 
M 4 HOH A 35 535 113 HOH HOH . 
M 4 HOH A 36 536 78 HOH HOH . 
M 4 HOH A 37 537 31 HOH HOH . 
M 4 HOH A 38 538 107 HOH HOH . 
M 4 HOH A 39 539 89 HOH HOH . 
M 4 HOH A 40 540 77 HOH HOH . 
M 4 HOH A 41 541 70 HOH HOH . 
M 4 HOH A 42 542 104 HOH HOH . 
M 4 HOH A 43 543 92 HOH HOH . 
M 4 HOH A 44 544 33 HOH HOH . 
M 4 HOH A 45 545 103 HOH HOH . 
M 4 HOH A 46 546 85 HOH HOH . 
N 4 HOH B 1 501 26 HOH HOH . 
N 4 HOH B 2 502 40 HOH HOH . 
N 4 HOH B 3 503 27 HOH HOH . 
N 4 HOH B 4 504 61 HOH HOH . 
N 4 HOH B 5 505 4 HOH HOH . 
N 4 HOH B 6 506 114 HOH HOH . 
N 4 HOH B 7 507 34 HOH HOH . 
N 4 HOH B 8 508 51 HOH HOH . 
N 4 HOH B 9 509 39 HOH HOH . 
N 4 HOH B 10 510 63 HOH HOH . 
N 4 HOH B 11 511 14 HOH HOH . 
N 4 HOH B 12 512 30 HOH HOH . 
N 4 HOH B 13 513 100 HOH HOH . 
N 4 HOH B 14 514 93 HOH HOH . 
N 4 HOH B 15 515 8 HOH HOH . 
N 4 HOH B 16 516 117 HOH HOH . 
N 4 HOH B 17 517 13 HOH HOH . 
N 4 HOH B 18 518 41 HOH HOH . 
N 4 HOH B 19 519 38 HOH HOH . 
N 4 HOH B 20 520 67 HOH HOH . 
N 4 HOH B 21 521 81 HOH HOH . 
N 4 HOH B 22 522 65 HOH HOH . 
N 4 HOH B 23 523 105 HOH HOH . 
N 4 HOH B 24 524 96 HOH HOH . 
N 4 HOH B 25 525 111 HOH HOH . 
N 4 HOH B 26 526 24 HOH HOH . 
N 4 HOH B 27 527 86 HOH HOH . 
N 4 HOH B 28 528 15 HOH HOH . 
N 4 HOH B 29 529 72 HOH HOH . 
N 4 HOH B 30 530 73 HOH HOH . 
N 4 HOH B 31 531 43 HOH HOH . 
N 4 HOH B 32 532 74 HOH HOH . 
N 4 HOH B 33 533 112 HOH HOH . 
N 4 HOH B 34 534 110 HOH HOH . 
N 4 HOH B 35 535 82 HOH HOH . 
O 4 HOH C 1 501 58 HOH HOH . 
O 4 HOH C 2 502 47 HOH HOH . 
O 4 HOH C 3 503 44 HOH HOH . 
O 4 HOH C 4 504 60 HOH HOH . 
O 4 HOH C 5 505 25 HOH HOH . 
O 4 HOH C 6 506 79 HOH HOH . 
O 4 HOH C 7 507 76 HOH HOH . 
O 4 HOH C 8 508 56 HOH HOH . 
O 4 HOH C 9 509 29 HOH HOH . 
O 4 HOH C 10 510 18 HOH HOH . 
O 4 HOH C 11 511 87 HOH HOH . 
O 4 HOH C 12 512 10 HOH HOH . 
O 4 HOH C 13 513 98 HOH HOH . 
O 4 HOH C 14 514 45 HOH HOH . 
O 4 HOH C 15 515 20 HOH HOH . 
O 4 HOH C 16 516 69 HOH HOH . 
O 4 HOH C 17 517 50 HOH HOH . 
O 4 HOH C 18 518 71 HOH HOH . 
O 4 HOH C 19 519 11 HOH HOH . 
O 4 HOH C 20 520 48 HOH HOH . 
O 4 HOH C 21 521 46 HOH HOH . 
O 4 HOH C 22 522 88 HOH HOH . 
O 4 HOH C 23 523 83 HOH HOH . 
O 4 HOH C 24 524 35 HOH HOH . 
O 4 HOH C 25 525 106 HOH HOH . 
O 4 HOH C 26 526 97 HOH HOH . 
O 4 HOH C 27 527 115 HOH HOH . 
O 4 HOH C 28 528 54 HOH HOH . 
O 4 HOH C 29 529 53 HOH HOH . 
O 4 HOH C 30 530 101 HOH HOH . 
O 4 HOH C 31 531 84 HOH HOH . 
O 4 HOH C 32 532 109 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 3 -43.247 -114.096 16.557 1 122.15 ? C1 NAG 402 B 1 
HETATM 2 C C2 NAG . . . H 3 -44.034 -114.429 17.867 1 128.33 ? C2 NAG 402 B 1 
HETATM 3 C C3 NAG . . . H 3 -45.577 -114.356 17.685 1 131.16 ? C3 NAG 402 B 1 
HETATM 4 C C4 NAG . . . H 3 -46.056 -113.393 16.6 1 130.95 ? C4 NAG 402 B 1 
HETATM 5 C C5 NAG . . . H 3 -45.115 -113.422 15.418 1 128.32 ? C5 NAG 402 B 1 
HETATM 6 C C6 NAG . . . H 3 -45.47 -112.455 14.314 1 126.47 ? C6 NAG 402 B 1 
HETATM 7 C C7 NAG . . . H 3 -42.957 -116.009 19.437 1 118.76 ? C7 NAG 402 B 1 
HETATM 8 C C8 NAG . . . H 3 -42.695 -117.457 19.731 1 112.56 ? C8 NAG 402 B 1 
HETATM 9 N N2 NAG . . . H 3 -43.666 -115.759 18.331 1 125.53 ? N2 NAG 402 B 1 
HETATM 10 O O3 NAG . . . H 3 -46.162 -113.978 18.927 1 127.65 ? O3 NAG 402 B 1 
HETATM 11 O O4 NAG . . . H 3 -47.354 -113.776 16.158 1 129.54 ? O4 NAG 402 B 1 
HETATM 12 O O5 NAG . . . H 3 -43.838 -113.041 15.91 1 126.17 ? O5 NAG 402 B 1 
HETATM 13 O O6 NAG . . . H 3 -44.679 -112.703 13.158 1 121.94 ? O6 NAG 402 B 1 
HETATM 14 O O7 NAG . . . H 3 -42.541 -115.112 20.163 1 117.6 ? O7 NAG 402 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#