data_7A3V # _model_server_result.job_id 7RabsJ0q3ADpP2RWBcpyAQ _model_server_result.datetime_utc '2024-11-25 07:50:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7A3V # _exptl.entry_id 7A3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7A3V _cell.length_a 127.959 _cell.length_b 127.959 _cell.length_c 115.518 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -19.253 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 332 A CYS 330 1_555 A SG CYS 332 A CYS 330 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A SG CYS 320 A CYS 318 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A SG CYS 322 A CYS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A SG CYS 325 A CYS 323 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc4 A ND1 HIS 351 A HIS 349 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7A3V _atom_sites.fract_transf_matrix[1][1] 0.007815 _atom_sites.fract_transf_matrix[1][2] 0.004512 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 GOL A 1 402 1 GOL GOL . D 3 GOL A 1 403 2 GOL GOL . E 4 QXE A 1 404 1 QXE CS7 . F 4 QXE A 1 405 2 QXE CS7 . G 5 EDO A 1 406 1 EDO EDO . H 6 HOH A 1 501 167 HOH HOH . H 6 HOH A 2 502 165 HOH HOH . H 6 HOH A 3 503 178 HOH HOH . H 6 HOH A 4 504 31 HOH HOH . H 6 HOH A 5 505 172 HOH HOH . H 6 HOH A 6 506 17 HOH HOH . H 6 HOH A 7 507 212 HOH HOH . H 6 HOH A 8 508 85 HOH HOH . H 6 HOH A 9 509 164 HOH HOH . H 6 HOH A 10 510 90 HOH HOH . H 6 HOH A 11 511 158 HOH HOH . H 6 HOH A 12 512 69 HOH HOH . H 6 HOH A 13 513 173 HOH HOH . H 6 HOH A 14 514 135 HOH HOH . H 6 HOH A 15 515 216 HOH HOH . H 6 HOH A 16 516 170 HOH HOH . H 6 HOH A 17 517 52 HOH HOH . H 6 HOH A 18 518 140 HOH HOH . H 6 HOH A 19 519 218 HOH HOH . H 6 HOH A 20 520 9 HOH HOH . H 6 HOH A 21 521 124 HOH HOH . H 6 HOH A 22 522 70 HOH HOH . H 6 HOH A 23 523 51 HOH HOH . H 6 HOH A 24 524 103 HOH HOH . H 6 HOH A 25 525 160 HOH HOH . H 6 HOH A 26 526 2 HOH HOH . H 6 HOH A 27 527 97 HOH HOH . H 6 HOH A 28 528 14 HOH HOH . H 6 HOH A 29 529 153 HOH HOH . H 6 HOH A 30 530 76 HOH HOH . H 6 HOH A 31 531 192 HOH HOH . H 6 HOH A 32 532 120 HOH HOH . H 6 HOH A 33 533 232 HOH HOH . H 6 HOH A 34 534 98 HOH HOH . H 6 HOH A 35 535 29 HOH HOH . H 6 HOH A 36 536 39 HOH HOH . H 6 HOH A 37 537 45 HOH HOH . H 6 HOH A 38 538 117 HOH HOH . H 6 HOH A 39 539 83 HOH HOH . H 6 HOH A 40 540 134 HOH HOH . H 6 HOH A 41 541 118 HOH HOH . H 6 HOH A 42 542 184 HOH HOH . H 6 HOH A 43 543 7 HOH HOH . H 6 HOH A 44 544 193 HOH HOH . H 6 HOH A 45 545 73 HOH HOH . H 6 HOH A 46 546 47 HOH HOH . H 6 HOH A 47 547 33 HOH HOH . H 6 HOH A 48 548 110 HOH HOH . H 6 HOH A 49 549 146 HOH HOH . H 6 HOH A 50 550 65 HOH HOH . H 6 HOH A 51 551 35 HOH HOH . H 6 HOH A 52 552 145 HOH HOH . H 6 HOH A 53 553 189 HOH HOH . H 6 HOH A 54 554 6 HOH HOH . H 6 HOH A 55 555 30 HOH HOH . H 6 HOH A 56 556 41 HOH HOH . H 6 HOH A 57 557 128 HOH HOH . H 6 HOH A 58 558 63 HOH HOH . H 6 HOH A 59 559 25 HOH HOH . H 6 HOH A 60 560 34 HOH HOH . H 6 HOH A 61 561 20 HOH HOH . H 6 HOH A 62 562 78 HOH HOH . H 6 HOH A 63 563 136 HOH HOH . H 6 HOH A 64 564 21 HOH HOH . H 6 HOH A 65 565 1 HOH HOH . H 6 HOH A 66 566 114 HOH HOH . H 6 HOH A 67 567 123 HOH HOH . H 6 HOH A 68 568 28 HOH HOH . H 6 HOH A 69 569 105 HOH HOH . H 6 HOH A 70 570 200 HOH HOH . H 6 HOH A 71 571 5 HOH HOH . H 6 HOH A 72 572 23 HOH HOH . H 6 HOH A 73 573 16 HOH HOH . H 6 HOH A 74 574 68 HOH HOH . H 6 HOH A 75 575 53 HOH HOH . H 6 HOH A 76 576 18 HOH HOH . H 6 HOH A 77 577 54 HOH HOH . H 6 HOH A 78 578 201 HOH HOH . H 6 HOH A 79 579 8 HOH HOH . H 6 HOH A 80 580 71 HOH HOH . H 6 HOH A 81 581 24 HOH HOH . H 6 HOH A 82 582 211 HOH HOH . H 6 HOH A 83 583 94 HOH HOH . H 6 HOH A 84 584 60 HOH HOH . H 6 HOH A 85 585 86 HOH HOH . H 6 HOH A 86 586 231 HOH HOH . H 6 HOH A 87 587 227 HOH HOH . H 6 HOH A 88 588 22 HOH HOH . H 6 HOH A 89 589 168 HOH HOH . H 6 HOH A 90 590 139 HOH HOH . H 6 HOH A 91 591 108 HOH HOH . H 6 HOH A 92 592 10 HOH HOH . H 6 HOH A 93 593 67 HOH HOH . H 6 HOH A 94 594 93 HOH HOH . H 6 HOH A 95 595 43 HOH HOH . H 6 HOH A 96 596 112 HOH HOH . H 6 HOH A 97 597 81 HOH HOH . H 6 HOH A 98 598 169 HOH HOH . H 6 HOH A 99 599 137 HOH HOH . H 6 HOH A 100 600 32 HOH HOH . H 6 HOH A 101 601 48 HOH HOH . H 6 HOH A 102 602 64 HOH HOH . H 6 HOH A 103 603 40 HOH HOH . H 6 HOH A 104 604 230 HOH HOH . H 6 HOH A 105 605 15 HOH HOH . H 6 HOH A 106 606 224 HOH HOH . H 6 HOH A 107 607 3 HOH HOH . H 6 HOH A 108 608 27 HOH HOH . H 6 HOH A 109 609 186 HOH HOH . H 6 HOH A 110 610 13 HOH HOH . H 6 HOH A 111 611 44 HOH HOH . H 6 HOH A 112 612 187 HOH HOH . H 6 HOH A 113 613 99 HOH HOH . H 6 HOH A 114 614 101 HOH HOH . H 6 HOH A 115 615 4 HOH HOH . H 6 HOH A 116 616 19 HOH HOH . H 6 HOH A 117 617 49 HOH HOH . H 6 HOH A 118 618 180 HOH HOH . H 6 HOH A 119 619 125 HOH HOH . H 6 HOH A 120 620 166 HOH HOH . H 6 HOH A 121 621 207 HOH HOH . H 6 HOH A 122 622 115 HOH HOH . H 6 HOH A 123 623 61 HOH HOH . H 6 HOH A 124 624 129 HOH HOH . H 6 HOH A 125 625 126 HOH HOH . H 6 HOH A 126 626 80 HOH HOH . H 6 HOH A 127 627 203 HOH HOH . H 6 HOH A 128 628 95 HOH HOH . H 6 HOH A 129 629 58 HOH HOH . H 6 HOH A 130 630 198 HOH HOH . H 6 HOH A 131 631 82 HOH HOH . H 6 HOH A 132 632 102 HOH HOH . H 6 HOH A 133 633 66 HOH HOH . H 6 HOH A 134 634 147 HOH HOH . H 6 HOH A 135 635 11 HOH HOH . H 6 HOH A 136 636 74 HOH HOH . H 6 HOH A 137 637 221 HOH HOH . H 6 HOH A 138 638 26 HOH HOH . H 6 HOH A 139 639 50 HOH HOH . H 6 HOH A 140 640 96 HOH HOH . H 6 HOH A 141 641 121 HOH HOH . H 6 HOH A 142 642 92 HOH HOH . H 6 HOH A 143 643 55 HOH HOH . H 6 HOH A 144 644 116 HOH HOH . H 6 HOH A 145 645 233 HOH HOH . H 6 HOH A 146 646 111 HOH HOH . H 6 HOH A 147 647 12 HOH HOH . H 6 HOH A 148 648 38 HOH HOH . H 6 HOH A 149 649 36 HOH HOH . H 6 HOH A 150 650 46 HOH HOH . H 6 HOH A 151 651 62 HOH HOH . H 6 HOH A 152 652 185 HOH HOH . H 6 HOH A 153 653 141 HOH HOH . H 6 HOH A 154 654 161 HOH HOH . H 6 HOH A 155 655 122 HOH HOH . H 6 HOH A 156 656 79 HOH HOH . H 6 HOH A 157 657 148 HOH HOH . H 6 HOH A 158 658 59 HOH HOH . H 6 HOH A 159 659 104 HOH HOH . H 6 HOH A 160 660 77 HOH HOH . H 6 HOH A 161 661 89 HOH HOH . H 6 HOH A 162 662 188 HOH HOH . H 6 HOH A 163 663 87 HOH HOH . H 6 HOH A 164 664 213 HOH HOH . H 6 HOH A 165 665 159 HOH HOH . H 6 HOH A 166 666 119 HOH HOH . H 6 HOH A 167 667 226 HOH HOH . H 6 HOH A 168 668 155 HOH HOH . H 6 HOH A 169 669 88 HOH HOH . H 6 HOH A 170 670 151 HOH HOH . H 6 HOH A 171 671 109 HOH HOH . H 6 HOH A 172 672 130 HOH HOH . H 6 HOH A 173 673 107 HOH HOH . H 6 HOH A 174 674 163 HOH HOH . H 6 HOH A 175 675 143 HOH HOH . H 6 HOH A 176 676 176 HOH HOH . H 6 HOH A 177 677 181 HOH HOH . H 6 HOH A 178 678 142 HOH HOH . H 6 HOH A 179 679 157 HOH HOH . H 6 HOH A 180 680 132 HOH HOH . H 6 HOH A 181 681 57 HOH HOH . H 6 HOH A 182 682 190 HOH HOH . H 6 HOH A 183 683 156 HOH HOH . H 6 HOH A 184 684 133 HOH HOH . H 6 HOH A 185 685 217 HOH HOH . H 6 HOH A 186 686 113 HOH HOH . H 6 HOH A 187 687 183 HOH HOH . H 6 HOH A 188 688 138 HOH HOH . H 6 HOH A 189 689 149 HOH HOH . H 6 HOH A 190 690 214 HOH HOH . H 6 HOH A 191 691 208 HOH HOH . H 6 HOH A 192 692 194 HOH HOH . H 6 HOH A 193 693 177 HOH HOH . H 6 HOH A 194 694 154 HOH HOH . H 6 HOH A 195 695 127 HOH HOH . H 6 HOH A 196 696 144 HOH HOH . H 6 HOH A 197 697 195 HOH HOH . H 6 HOH A 198 698 234 HOH HOH . H 6 HOH A 199 699 100 HOH HOH . H 6 HOH A 200 700 162 HOH HOH . H 6 HOH A 201 701 182 HOH HOH . H 6 HOH A 202 702 219 HOH HOH . H 6 HOH A 203 703 84 HOH HOH . H 6 HOH A 204 704 72 HOH HOH . H 6 HOH A 205 705 131 HOH HOH . H 6 HOH A 206 706 223 HOH HOH . H 6 HOH A 207 707 229 HOH HOH . H 6 HOH A 208 708 228 HOH HOH . H 6 HOH A 209 709 202 HOH HOH . H 6 HOH A 210 710 106 HOH HOH . H 6 HOH A 211 711 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 9.869 32.158 -18.906 1 35.52 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 3 10.644 31.317 -19.78 1 30.82 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 3 8.822 32.905 -19.771 1 43.13 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 3 7.915 32.034 -20.338 1 44.61 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 3 8.125 33.921 -18.821 1 41.34 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 3 7.319 33.189 -17.959 1 37.12 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #