data_7A3W # _model_server_result.job_id m_fV9lYRV46cbPYR_Ex0dA _model_server_result.datetime_utc '2024-10-19 23:57:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 7A3W # _exptl.entry_id 7A3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.51 _cell.angle_gamma 90 _cell.entry_id 7A3W _cell.length_a 48.44 _cell.length_b 65.391 _cell.length_c 81.877 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7A3W _atom_sites.fract_transf_matrix[1][1] 0.020644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000545 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012218 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 301 301 NDP NDP . D 3 EDO A 1 302 401 EDO EDO . E 3 EDO A 1 303 501 EDO EDO . F 2 NDP B 1 301 301 NDP NDP . G 4 GOL B 1 302 401 GOL GOL . H 5 HOH A 1 401 185 HOH HOH . H 5 HOH A 2 402 277 HOH HOH . H 5 HOH A 3 403 288 HOH HOH . H 5 HOH A 4 404 319 HOH HOH . H 5 HOH A 5 405 316 HOH HOH . H 5 HOH A 6 406 68 HOH HOH . H 5 HOH A 7 407 205 HOH HOH . H 5 HOH A 8 408 283 HOH HOH . H 5 HOH A 9 409 29 HOH HOH . H 5 HOH A 10 410 322 HOH HOH . H 5 HOH A 11 411 263 HOH HOH . H 5 HOH A 12 412 19 HOH HOH . H 5 HOH A 13 413 73 HOH HOH . H 5 HOH A 14 414 207 HOH HOH . H 5 HOH A 15 415 308 HOH HOH . H 5 HOH A 16 416 202 HOH HOH . H 5 HOH A 17 417 79 HOH HOH . H 5 HOH A 18 418 253 HOH HOH . H 5 HOH A 19 419 262 HOH HOH . H 5 HOH A 20 420 299 HOH HOH . H 5 HOH A 21 421 329 HOH HOH . H 5 HOH A 22 422 129 HOH HOH . H 5 HOH A 23 423 69 HOH HOH . H 5 HOH A 24 424 21 HOH HOH . H 5 HOH A 25 425 294 HOH HOH . H 5 HOH A 26 426 4 HOH HOH . H 5 HOH A 27 427 14 HOH HOH . H 5 HOH A 28 428 92 HOH HOH . H 5 HOH A 29 429 232 HOH HOH . H 5 HOH A 30 430 282 HOH HOH . H 5 HOH A 31 431 122 HOH HOH . H 5 HOH A 32 432 165 HOH HOH . H 5 HOH A 33 433 55 HOH HOH . H 5 HOH A 34 434 295 HOH HOH . H 5 HOH A 35 435 330 HOH HOH . H 5 HOH A 36 436 153 HOH HOH . H 5 HOH A 37 437 225 HOH HOH . H 5 HOH A 38 438 28 HOH HOH . H 5 HOH A 39 439 39 HOH HOH . H 5 HOH A 40 440 108 HOH HOH . H 5 HOH A 41 441 221 HOH HOH . H 5 HOH A 42 442 209 HOH HOH . H 5 HOH A 43 443 281 HOH HOH . H 5 HOH A 44 444 50 HOH HOH . H 5 HOH A 45 445 48 HOH HOH . H 5 HOH A 46 446 137 HOH HOH . H 5 HOH A 47 447 10 HOH HOH . H 5 HOH A 48 448 20 HOH HOH . H 5 HOH A 49 449 34 HOH HOH . H 5 HOH A 50 450 180 HOH HOH . H 5 HOH A 51 451 127 HOH HOH . H 5 HOH A 52 452 23 HOH HOH . H 5 HOH A 53 453 201 HOH HOH . H 5 HOH A 54 454 146 HOH HOH . H 5 HOH A 55 455 82 HOH HOH . H 5 HOH A 56 456 124 HOH HOH . H 5 HOH A 57 457 60 HOH HOH . H 5 HOH A 58 458 33 HOH HOH . H 5 HOH A 59 459 142 HOH HOH . H 5 HOH A 60 460 335 HOH HOH . H 5 HOH A 61 461 16 HOH HOH . H 5 HOH A 62 462 97 HOH HOH . H 5 HOH A 63 463 66 HOH HOH . H 5 HOH A 64 464 131 HOH HOH . H 5 HOH A 65 465 254 HOH HOH . H 5 HOH A 66 466 93 HOH HOH . H 5 HOH A 67 467 269 HOH HOH . H 5 HOH A 68 468 167 HOH HOH . H 5 HOH A 69 469 248 HOH HOH . H 5 HOH A 70 470 164 HOH HOH . H 5 HOH A 71 471 170 HOH HOH . H 5 HOH A 72 472 6 HOH HOH . H 5 HOH A 73 473 260 HOH HOH . H 5 HOH A 74 474 30 HOH HOH . H 5 HOH A 75 475 251 HOH HOH . H 5 HOH A 76 476 114 HOH HOH . H 5 HOH A 77 477 138 HOH HOH . H 5 HOH A 78 478 259 HOH HOH . H 5 HOH A 79 479 266 HOH HOH . H 5 HOH A 80 480 107 HOH HOH . H 5 HOH A 81 481 169 HOH HOH . H 5 HOH A 82 482 134 HOH HOH . H 5 HOH A 83 483 5 HOH HOH . H 5 HOH A 84 484 40 HOH HOH . H 5 HOH A 85 485 178 HOH HOH . H 5 HOH A 86 486 59 HOH HOH . H 5 HOH A 87 487 168 HOH HOH . H 5 HOH A 88 488 148 HOH HOH . H 5 HOH A 89 489 271 HOH HOH . H 5 HOH A 90 490 147 HOH HOH . H 5 HOH A 91 491 250 HOH HOH . H 5 HOH A 92 492 252 HOH HOH . H 5 HOH A 93 493 236 HOH HOH . H 5 HOH A 94 494 151 HOH HOH . H 5 HOH A 95 495 270 HOH HOH . H 5 HOH A 96 496 94 HOH HOH . H 5 HOH A 97 497 101 HOH HOH . H 5 HOH A 98 498 337 HOH HOH . H 5 HOH A 99 499 293 HOH HOH . H 5 HOH A 100 500 215 HOH HOH . H 5 HOH A 101 501 306 HOH HOH . H 5 HOH A 102 502 31 HOH HOH . H 5 HOH A 103 503 200 HOH HOH . H 5 HOH A 104 504 49 HOH HOH . H 5 HOH A 105 505 87 HOH HOH . H 5 HOH A 106 506 278 HOH HOH . H 5 HOH A 107 507 326 HOH HOH . H 5 HOH A 108 508 35 HOH HOH . H 5 HOH A 109 509 256 HOH HOH . H 5 HOH A 110 510 120 HOH HOH . H 5 HOH A 111 511 188 HOH HOH . H 5 HOH A 112 512 150 HOH HOH . H 5 HOH A 113 513 287 HOH HOH . H 5 HOH A 114 514 318 HOH HOH . H 5 HOH A 115 515 103 HOH HOH . H 5 HOH A 116 516 140 HOH HOH . H 5 HOH A 117 517 276 HOH HOH . H 5 HOH A 118 518 17 HOH HOH . H 5 HOH A 119 519 141 HOH HOH . H 5 HOH A 120 520 233 HOH HOH . H 5 HOH A 121 521 183 HOH HOH . H 5 HOH A 122 522 143 HOH HOH . H 5 HOH A 123 523 280 HOH HOH . H 5 HOH A 124 524 83 HOH HOH . H 5 HOH A 125 525 320 HOH HOH . H 5 HOH A 126 526 132 HOH HOH . H 5 HOH A 127 527 227 HOH HOH . H 5 HOH A 128 528 298 HOH HOH . H 5 HOH A 129 529 234 HOH HOH . H 5 HOH A 130 530 317 HOH HOH . H 5 HOH A 131 531 309 HOH HOH . H 5 HOH A 132 532 331 HOH HOH . H 5 HOH A 133 533 197 HOH HOH . H 5 HOH A 134 534 159 HOH HOH . H 5 HOH A 135 535 193 HOH HOH . H 5 HOH A 136 536 324 HOH HOH . H 5 HOH A 137 537 145 HOH HOH . H 5 HOH A 138 538 125 HOH HOH . H 5 HOH A 139 539 163 HOH HOH . H 5 HOH A 140 540 311 HOH HOH . H 5 HOH A 141 541 230 HOH HOH . H 5 HOH A 142 542 212 HOH HOH . H 5 HOH A 143 543 246 HOH HOH . H 5 HOH A 144 544 315 HOH HOH . H 5 HOH A 145 545 310 HOH HOH . I 5 HOH B 1 401 265 HOH HOH . I 5 HOH B 2 402 272 HOH HOH . I 5 HOH B 3 403 296 HOH HOH . I 5 HOH B 4 404 258 HOH HOH . I 5 HOH B 5 405 160 HOH HOH . I 5 HOH B 6 406 334 HOH HOH . I 5 HOH B 7 407 313 HOH HOH . I 5 HOH B 8 408 155 HOH HOH . I 5 HOH B 9 409 273 HOH HOH . I 5 HOH B 10 410 84 HOH HOH . I 5 HOH B 11 411 81 HOH HOH . I 5 HOH B 12 412 312 HOH HOH . I 5 HOH B 13 413 267 HOH HOH . I 5 HOH B 14 414 228 HOH HOH . I 5 HOH B 15 415 57 HOH HOH . I 5 HOH B 16 416 149 HOH HOH . I 5 HOH B 17 417 166 HOH HOH . I 5 HOH B 18 418 182 HOH HOH . I 5 HOH B 19 419 162 HOH HOH . I 5 HOH B 20 420 323 HOH HOH . I 5 HOH B 21 421 63 HOH HOH . I 5 HOH B 22 422 53 HOH HOH . I 5 HOH B 23 423 328 HOH HOH . I 5 HOH B 24 424 111 HOH HOH . I 5 HOH B 25 425 268 HOH HOH . I 5 HOH B 26 426 15 HOH HOH . I 5 HOH B 27 427 181 HOH HOH . I 5 HOH B 28 428 285 HOH HOH . I 5 HOH B 29 429 189 HOH HOH . I 5 HOH B 30 430 135 HOH HOH . I 5 HOH B 31 431 11 HOH HOH . I 5 HOH B 32 432 175 HOH HOH . I 5 HOH B 33 433 264 HOH HOH . I 5 HOH B 34 434 307 HOH HOH . I 5 HOH B 35 435 144 HOH HOH . I 5 HOH B 36 436 25 HOH HOH . I 5 HOH B 37 437 74 HOH HOH . I 5 HOH B 38 438 292 HOH HOH . I 5 HOH B 39 439 187 HOH HOH . I 5 HOH B 40 440 119 HOH HOH . I 5 HOH B 41 441 106 HOH HOH . I 5 HOH B 42 442 115 HOH HOH . I 5 HOH B 43 443 2 HOH HOH . I 5 HOH B 44 444 88 HOH HOH . I 5 HOH B 45 445 43 HOH HOH . I 5 HOH B 46 446 208 HOH HOH . I 5 HOH B 47 447 216 HOH HOH . I 5 HOH B 48 448 22 HOH HOH . I 5 HOH B 49 449 61 HOH HOH . I 5 HOH B 50 450 56 HOH HOH . I 5 HOH B 51 451 99 HOH HOH . I 5 HOH B 52 452 303 HOH HOH . I 5 HOH B 53 453 261 HOH HOH . I 5 HOH B 54 454 130 HOH HOH . I 5 HOH B 55 455 218 HOH HOH . I 5 HOH B 56 456 12 HOH HOH . I 5 HOH B 57 457 13 HOH HOH . I 5 HOH B 58 458 305 HOH HOH . I 5 HOH B 59 459 154 HOH HOH . I 5 HOH B 60 460 44 HOH HOH . I 5 HOH B 61 461 203 HOH HOH . I 5 HOH B 62 462 123 HOH HOH . I 5 HOH B 63 463 9 HOH HOH . I 5 HOH B 64 464 24 HOH HOH . I 5 HOH B 65 465 249 HOH HOH . I 5 HOH B 66 466 54 HOH HOH . I 5 HOH B 67 467 26 HOH HOH . I 5 HOH B 68 468 80 HOH HOH . I 5 HOH B 69 469 198 HOH HOH . I 5 HOH B 70 470 126 HOH HOH . I 5 HOH B 71 471 3 HOH HOH . I 5 HOH B 72 472 18 HOH HOH . I 5 HOH B 73 473 177 HOH HOH . I 5 HOH B 74 474 65 HOH HOH . I 5 HOH B 75 475 72 HOH HOH . I 5 HOH B 76 476 71 HOH HOH . I 5 HOH B 77 477 211 HOH HOH . I 5 HOH B 78 478 32 HOH HOH . I 5 HOH B 79 479 62 HOH HOH . I 5 HOH B 80 480 274 HOH HOH . I 5 HOH B 81 481 96 HOH HOH . I 5 HOH B 82 482 41 HOH HOH . I 5 HOH B 83 483 27 HOH HOH . I 5 HOH B 84 484 85 HOH HOH . I 5 HOH B 85 485 8 HOH HOH . I 5 HOH B 86 486 223 HOH HOH . I 5 HOH B 87 487 257 HOH HOH . I 5 HOH B 88 488 152 HOH HOH . I 5 HOH B 89 489 314 HOH HOH . I 5 HOH B 90 490 118 HOH HOH . I 5 HOH B 91 491 7 HOH HOH . I 5 HOH B 92 492 297 HOH HOH . I 5 HOH B 93 493 255 HOH HOH . I 5 HOH B 94 494 91 HOH HOH . I 5 HOH B 95 495 196 HOH HOH . I 5 HOH B 96 496 70 HOH HOH . I 5 HOH B 97 497 109 HOH HOH . I 5 HOH B 98 498 100 HOH HOH . I 5 HOH B 99 499 67 HOH HOH . I 5 HOH B 100 500 89 HOH HOH . I 5 HOH B 101 501 156 HOH HOH . I 5 HOH B 102 502 45 HOH HOH . I 5 HOH B 103 503 98 HOH HOH . I 5 HOH B 104 504 76 HOH HOH . I 5 HOH B 105 505 102 HOH HOH . I 5 HOH B 106 506 38 HOH HOH . I 5 HOH B 107 507 239 HOH HOH . I 5 HOH B 108 508 191 HOH HOH . I 5 HOH B 109 509 64 HOH HOH . I 5 HOH B 110 510 77 HOH HOH . I 5 HOH B 111 511 238 HOH HOH . I 5 HOH B 112 512 302 HOH HOH . I 5 HOH B 113 513 86 HOH HOH . I 5 HOH B 114 514 133 HOH HOH . I 5 HOH B 115 515 206 HOH HOH . I 5 HOH B 116 516 47 HOH HOH . I 5 HOH B 117 517 42 HOH HOH . I 5 HOH B 118 518 117 HOH HOH . I 5 HOH B 119 519 46 HOH HOH . I 5 HOH B 120 520 190 HOH HOH . I 5 HOH B 121 521 204 HOH HOH . I 5 HOH B 122 522 194 HOH HOH . I 5 HOH B 123 523 286 HOH HOH . I 5 HOH B 124 524 237 HOH HOH . I 5 HOH B 125 525 229 HOH HOH . I 5 HOH B 126 526 179 HOH HOH . I 5 HOH B 127 527 128 HOH HOH . I 5 HOH B 128 528 105 HOH HOH . I 5 HOH B 129 529 36 HOH HOH . I 5 HOH B 130 530 52 HOH HOH . I 5 HOH B 131 531 51 HOH HOH . I 5 HOH B 132 532 219 HOH HOH . I 5 HOH B 133 533 192 HOH HOH . I 5 HOH B 134 534 58 HOH HOH . I 5 HOH B 135 535 157 HOH HOH . I 5 HOH B 136 536 113 HOH HOH . I 5 HOH B 137 537 75 HOH HOH . I 5 HOH B 138 538 136 HOH HOH . I 5 HOH B 139 539 199 HOH HOH . I 5 HOH B 140 540 289 HOH HOH . I 5 HOH B 141 541 95 HOH HOH . I 5 HOH B 142 542 213 HOH HOH . I 5 HOH B 143 543 37 HOH HOH . I 5 HOH B 144 544 110 HOH HOH . I 5 HOH B 145 545 226 HOH HOH . I 5 HOH B 146 546 244 HOH HOH . I 5 HOH B 147 547 139 HOH HOH . I 5 HOH B 148 548 291 HOH HOH . I 5 HOH B 149 549 290 HOH HOH . I 5 HOH B 150 550 171 HOH HOH . I 5 HOH B 151 551 184 HOH HOH . I 5 HOH B 152 552 214 HOH HOH . I 5 HOH B 153 553 195 HOH HOH . I 5 HOH B 154 554 78 HOH HOH . I 5 HOH B 155 555 300 HOH HOH . I 5 HOH B 156 556 245 HOH HOH . I 5 HOH B 157 557 158 HOH HOH . I 5 HOH B 158 558 240 HOH HOH . I 5 HOH B 159 559 90 HOH HOH . I 5 HOH B 160 560 220 HOH HOH . I 5 HOH B 161 561 235 HOH HOH . I 5 HOH B 162 562 121 HOH HOH . I 5 HOH B 163 563 333 HOH HOH . I 5 HOH B 164 564 173 HOH HOH . I 5 HOH B 165 565 217 HOH HOH . I 5 HOH B 166 566 275 HOH HOH . I 5 HOH B 167 567 224 HOH HOH . I 5 HOH B 168 568 174 HOH HOH . I 5 HOH B 169 569 243 HOH HOH . I 5 HOH B 170 570 336 HOH HOH . I 5 HOH B 171 571 247 HOH HOH . I 5 HOH B 172 572 301 HOH HOH . I 5 HOH B 173 573 104 HOH HOH . I 5 HOH B 174 574 279 HOH HOH . I 5 HOH B 175 575 327 HOH HOH . I 5 HOH B 176 576 116 HOH HOH . I 5 HOH B 177 577 186 HOH HOH . I 5 HOH B 178 578 332 HOH HOH . I 5 HOH B 179 579 321 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 23.998 20.682 -22.782 1 41.28 ? C1 GOL 302 B 1 HETATM 2 O O1 GOL . . . G 4 24.043 20.29 -21.412 1 40.26 ? O1 GOL 302 B 1 HETATM 3 C C2 GOL . . . G 4 22.613 20.567 -23.411 1 41.68 ? C2 GOL 302 B 1 HETATM 4 O O2 GOL . . . G 4 21.675 21.439 -22.785 1 45.14 ? O2 GOL 302 B 1 HETATM 5 C C3 GOL . . . G 4 22.041 19.16 -23.469 1 39.4 ? C3 GOL 302 B 1 HETATM 6 O O3 GOL . . . G 4 21.923 18.544 -22.186 1 38.71 ? O3 GOL 302 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #