data_7A3X # _model_server_result.job_id NvAxbYETn6S63RL0YW2RNg _model_server_result.datetime_utc '2024-11-24 19:49:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7A3X # _exptl.entry_id 7A3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.17 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description sulfolane _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7A3X _cell.length_a 128.292 _cell.length_b 128.292 _cell.length_c 114.859 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 x-y,x,z-1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 -19.143167 3 'crystal symmetry operation' 7_554 y,x,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -38.286333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 332 A CYS 330 1_555 A SG CYS 332 A CYS 330 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A SG CYS 320 A CYS 318 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A SG CYS 322 A CYS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc3 A SG CYS 325 A CYS 323 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc4 A ND1 HIS 351 A HIS 349 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'C4 H8 O2 S' _chem_comp.formula_weight 120.17 _chem_comp.id QXB _chem_comp.mon_nstd_flag . _chem_comp.name sulfolane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'thiolane 1,1-dioxide' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 S QXB doub 290 n n C2 C3 QXB sing 291 n n C2 C1 QXB sing 292 n n C3 S QXB sing 293 n n C S QXB sing 294 n n C C1 QXB sing 295 n n S O QXB doub 296 n n C1 H1 QXB sing 297 n n C1 H2 QXB sing 298 n n C2 H3 QXB sing 299 n n C2 H4 QXB sing 300 n n C3 H5 QXB sing 301 n n C3 H6 QXB sing 302 n n C H7 QXB sing 303 n n C H8 QXB sing 304 n n # _atom_sites.entry_id 7A3X _atom_sites.fract_transf_matrix[1][1] 0.007795 _atom_sites.fract_transf_matrix[1][2] 0.0045 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 GOL A 1 402 1 GOL GOL . D 3 GOL A 1 403 2 GOL GOL . E 4 QXB A 1 404 1 QXB TMS . F 4 QXB A 1 405 2 QXB TMS . G 4 QXB A 1 406 5 QXB TMS . H 5 HOH A 1 501 143 HOH HOH . H 5 HOH A 2 502 149 HOH HOH . H 5 HOH A 3 503 152 HOH HOH . H 5 HOH A 4 504 95 HOH HOH . H 5 HOH A 5 505 160 HOH HOH . H 5 HOH A 6 506 38 HOH HOH . H 5 HOH A 7 507 27 HOH HOH . H 5 HOH A 8 508 134 HOH HOH . H 5 HOH A 9 509 101 HOH HOH . H 5 HOH A 10 510 137 HOH HOH . H 5 HOH A 11 511 45 HOH HOH . H 5 HOH A 12 512 135 HOH HOH . H 5 HOH A 13 513 113 HOH HOH . H 5 HOH A 14 514 145 HOH HOH . H 5 HOH A 15 515 199 HOH HOH . H 5 HOH A 16 516 136 HOH HOH . H 5 HOH A 17 517 210 HOH HOH . H 5 HOH A 18 518 74 HOH HOH . H 5 HOH A 19 519 187 HOH HOH . H 5 HOH A 20 520 84 HOH HOH . H 5 HOH A 21 521 78 HOH HOH . H 5 HOH A 22 522 128 HOH HOH . H 5 HOH A 23 523 114 HOH HOH . H 5 HOH A 24 524 110 HOH HOH . H 5 HOH A 25 525 139 HOH HOH . H 5 HOH A 26 526 14 HOH HOH . H 5 HOH A 27 527 87 HOH HOH . H 5 HOH A 28 528 24 HOH HOH . H 5 HOH A 29 529 94 HOH HOH . H 5 HOH A 30 530 76 HOH HOH . H 5 HOH A 31 531 43 HOH HOH . H 5 HOH A 32 532 79 HOH HOH . H 5 HOH A 33 533 17 HOH HOH . H 5 HOH A 34 534 73 HOH HOH . H 5 HOH A 35 535 62 HOH HOH . H 5 HOH A 36 536 12 HOH HOH . H 5 HOH A 37 537 56 HOH HOH . H 5 HOH A 38 538 13 HOH HOH . H 5 HOH A 39 539 2 HOH HOH . H 5 HOH A 40 540 58 HOH HOH . H 5 HOH A 41 541 41 HOH HOH . H 5 HOH A 42 542 141 HOH HOH . H 5 HOH A 43 543 96 HOH HOH . H 5 HOH A 44 544 70 HOH HOH . H 5 HOH A 45 545 120 HOH HOH . H 5 HOH A 46 546 77 HOH HOH . H 5 HOH A 47 547 88 HOH HOH . H 5 HOH A 48 548 7 HOH HOH . H 5 HOH A 49 549 198 HOH HOH . H 5 HOH A 50 550 25 HOH HOH . H 5 HOH A 51 551 211 HOH HOH . H 5 HOH A 52 552 55 HOH HOH . H 5 HOH A 53 553 26 HOH HOH . H 5 HOH A 54 554 104 HOH HOH . H 5 HOH A 55 555 130 HOH HOH . H 5 HOH A 56 556 39 HOH HOH . H 5 HOH A 57 557 53 HOH HOH . H 5 HOH A 58 558 18 HOH HOH . H 5 HOH A 59 559 116 HOH HOH . H 5 HOH A 60 560 126 HOH HOH . H 5 HOH A 61 561 32 HOH HOH . H 5 HOH A 62 562 4 HOH HOH . H 5 HOH A 63 563 9 HOH HOH . H 5 HOH A 64 564 19 HOH HOH . H 5 HOH A 65 565 22 HOH HOH . H 5 HOH A 66 566 83 HOH HOH . H 5 HOH A 67 567 133 HOH HOH . H 5 HOH A 68 568 91 HOH HOH . H 5 HOH A 69 569 112 HOH HOH . H 5 HOH A 70 570 5 HOH HOH . H 5 HOH A 71 571 16 HOH HOH . H 5 HOH A 72 572 191 HOH HOH . H 5 HOH A 73 573 105 HOH HOH . H 5 HOH A 74 574 6 HOH HOH . H 5 HOH A 75 575 103 HOH HOH . H 5 HOH A 76 576 8 HOH HOH . H 5 HOH A 77 577 117 HOH HOH . H 5 HOH A 78 578 66 HOH HOH . H 5 HOH A 79 579 52 HOH HOH . H 5 HOH A 80 580 50 HOH HOH . H 5 HOH A 81 581 196 HOH HOH . H 5 HOH A 82 582 138 HOH HOH . H 5 HOH A 83 583 48 HOH HOH . H 5 HOH A 84 584 68 HOH HOH . H 5 HOH A 85 585 156 HOH HOH . H 5 HOH A 86 586 179 HOH HOH . H 5 HOH A 87 587 123 HOH HOH . H 5 HOH A 88 588 118 HOH HOH . H 5 HOH A 89 589 188 HOH HOH . H 5 HOH A 90 590 40 HOH HOH . H 5 HOH A 91 591 150 HOH HOH . H 5 HOH A 92 592 1 HOH HOH . H 5 HOH A 93 593 29 HOH HOH . H 5 HOH A 94 594 109 HOH HOH . H 5 HOH A 95 595 190 HOH HOH . H 5 HOH A 96 596 42 HOH HOH . H 5 HOH A 97 597 99 HOH HOH . H 5 HOH A 98 598 47 HOH HOH . H 5 HOH A 99 599 183 HOH HOH . H 5 HOH A 100 600 86 HOH HOH . H 5 HOH A 101 601 97 HOH HOH . H 5 HOH A 102 602 144 HOH HOH . H 5 HOH A 103 603 108 HOH HOH . H 5 HOH A 104 604 90 HOH HOH . H 5 HOH A 105 605 60 HOH HOH . H 5 HOH A 106 606 98 HOH HOH . H 5 HOH A 107 607 100 HOH HOH . H 5 HOH A 108 608 200 HOH HOH . H 5 HOH A 109 609 93 HOH HOH . H 5 HOH A 110 610 21 HOH HOH . H 5 HOH A 111 611 51 HOH HOH . H 5 HOH A 112 612 122 HOH HOH . H 5 HOH A 113 613 3 HOH HOH . H 5 HOH A 114 614 37 HOH HOH . H 5 HOH A 115 615 124 HOH HOH . H 5 HOH A 116 616 54 HOH HOH . H 5 HOH A 117 617 207 HOH HOH . H 5 HOH A 118 618 125 HOH HOH . H 5 HOH A 119 619 30 HOH HOH . H 5 HOH A 120 620 132 HOH HOH . H 5 HOH A 121 621 92 HOH HOH . H 5 HOH A 122 622 189 HOH HOH . H 5 HOH A 123 623 44 HOH HOH . H 5 HOH A 124 624 153 HOH HOH . H 5 HOH A 125 625 85 HOH HOH . H 5 HOH A 126 626 72 HOH HOH . H 5 HOH A 127 627 80 HOH HOH . H 5 HOH A 128 628 31 HOH HOH . H 5 HOH A 129 629 81 HOH HOH . H 5 HOH A 130 630 20 HOH HOH . H 5 HOH A 131 631 33 HOH HOH . H 5 HOH A 132 632 170 HOH HOH . H 5 HOH A 133 633 168 HOH HOH . H 5 HOH A 134 634 204 HOH HOH . H 5 HOH A 135 635 213 HOH HOH . H 5 HOH A 136 636 208 HOH HOH . H 5 HOH A 137 637 23 HOH HOH . H 5 HOH A 138 638 35 HOH HOH . H 5 HOH A 139 639 69 HOH HOH . H 5 HOH A 140 640 148 HOH HOH . H 5 HOH A 141 641 202 HOH HOH . H 5 HOH A 142 642 71 HOH HOH . H 5 HOH A 143 643 64 HOH HOH . H 5 HOH A 144 644 159 HOH HOH . H 5 HOH A 145 645 185 HOH HOH . H 5 HOH A 146 646 154 HOH HOH . H 5 HOH A 147 647 147 HOH HOH . H 5 HOH A 148 648 106 HOH HOH . H 5 HOH A 149 649 167 HOH HOH . H 5 HOH A 150 650 59 HOH HOH . H 5 HOH A 151 651 49 HOH HOH . H 5 HOH A 152 652 181 HOH HOH . H 5 HOH A 153 653 121 HOH HOH . H 5 HOH A 154 654 61 HOH HOH . H 5 HOH A 155 655 142 HOH HOH . H 5 HOH A 156 656 212 HOH HOH . H 5 HOH A 157 657 67 HOH HOH . H 5 HOH A 158 658 203 HOH HOH . H 5 HOH A 159 659 119 HOH HOH . H 5 HOH A 160 660 215 HOH HOH . H 5 HOH A 161 661 174 HOH HOH . H 5 HOH A 162 662 158 HOH HOH . H 5 HOH A 163 663 163 HOH HOH . H 5 HOH A 164 664 176 HOH HOH . H 5 HOH A 165 665 171 HOH HOH . H 5 HOH A 166 666 102 HOH HOH . H 5 HOH A 167 667 157 HOH HOH . H 5 HOH A 168 668 127 HOH HOH . H 5 HOH A 169 669 115 HOH HOH . H 5 HOH A 170 670 146 HOH HOH . H 5 HOH A 171 671 184 HOH HOH . H 5 HOH A 172 672 131 HOH HOH . H 5 HOH A 173 673 195 HOH HOH . H 5 HOH A 174 674 172 HOH HOH . H 5 HOH A 175 675 89 HOH HOH . H 5 HOH A 176 676 175 HOH HOH . H 5 HOH A 177 677 164 HOH HOH . H 5 HOH A 178 678 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QXB . . . E 4 21.756 31.28 -8.922 0.87 37.76 ? C1 QXB 404 A 1 HETATM 2 C C2 QXB . . . E 4 22.231 32.52 -9.611 0.87 42.51 ? C2 QXB 404 A 1 HETATM 3 C C3 QXB . . . E 4 21.079 33.513 -9.562 0.87 42.26 ? C3 QXB 404 A 1 HETATM 4 O O1 QXB . . . E 4 18.723 32.852 -10.391 0.87 42.99 ? O1 QXB 404 A 1 HETATM 5 C C QXB . . . E 4 20.311 31.098 -9.352 0.87 39.4 ? C QXB 404 A 1 HETATM 6 O O QXB . . . E 4 19.126 32.906 -7.965 0.87 43.49 ? O QXB 404 A 1 HETATM 7 S S QXB . . . E 4 19.623 32.652 -9.289 0.87 45.03 ? S QXB 404 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 7 #