data_7A41 # _model_server_result.job_id L6Y5T6lcBbSHNIFKsAvAbw _model_server_result.datetime_utc '2024-10-10 11:27:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 7A41 # _exptl.entry_id 7A41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.84 _cell.angle_gamma 90 _cell.entry_id 7A41 _cell.length_a 64.21 _cell.length_b 106.57 _cell.length_c 73.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7A41 _atom_sites.fract_transf_matrix[1][1] 0.015574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006242 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QYQ A 1 801 1 QYQ LI1 . D 3 DMS B 1 801 801 DMS DMS . E 2 QYQ B 1 802 1 QYQ LI1 . F 4 HOH A 1 901 114 HOH HOH . F 4 HOH A 2 902 136 HOH HOH . F 4 HOH A 3 903 108 HOH HOH . F 4 HOH A 4 904 206 HOH HOH . F 4 HOH A 5 905 157 HOH HOH . F 4 HOH A 6 906 58 HOH HOH . F 4 HOH A 7 907 142 HOH HOH . F 4 HOH A 8 908 194 HOH HOH . F 4 HOH A 9 909 54 HOH HOH . F 4 HOH A 10 910 186 HOH HOH . F 4 HOH A 11 911 216 HOH HOH . F 4 HOH A 12 912 42 HOH HOH . F 4 HOH A 13 913 48 HOH HOH . F 4 HOH A 14 914 106 HOH HOH . F 4 HOH A 15 915 141 HOH HOH . F 4 HOH A 16 916 149 HOH HOH . F 4 HOH A 17 917 162 HOH HOH . F 4 HOH A 18 918 150 HOH HOH . F 4 HOH A 19 919 118 HOH HOH . F 4 HOH A 20 920 158 HOH HOH . F 4 HOH A 21 921 47 HOH HOH . F 4 HOH A 22 922 151 HOH HOH . F 4 HOH A 23 923 13 HOH HOH . F 4 HOH A 24 924 69 HOH HOH . F 4 HOH A 25 925 164 HOH HOH . F 4 HOH A 26 926 53 HOH HOH . F 4 HOH A 27 927 113 HOH HOH . F 4 HOH A 28 928 112 HOH HOH . F 4 HOH A 29 929 124 HOH HOH . F 4 HOH A 30 930 148 HOH HOH . F 4 HOH A 31 931 159 HOH HOH . F 4 HOH A 32 932 134 HOH HOH . F 4 HOH A 33 933 197 HOH HOH . F 4 HOH A 34 934 190 HOH HOH . F 4 HOH A 35 935 125 HOH HOH . F 4 HOH A 36 936 139 HOH HOH . F 4 HOH A 37 937 38 HOH HOH . F 4 HOH A 38 938 65 HOH HOH . F 4 HOH A 39 939 172 HOH HOH . F 4 HOH A 40 940 144 HOH HOH . F 4 HOH A 41 941 2 HOH HOH . F 4 HOH A 42 942 156 HOH HOH . F 4 HOH A 43 943 177 HOH HOH . F 4 HOH A 44 944 176 HOH HOH . F 4 HOH A 45 945 209 HOH HOH . F 4 HOH A 46 946 204 HOH HOH . F 4 HOH A 47 947 127 HOH HOH . F 4 HOH A 48 948 152 HOH HOH . F 4 HOH A 49 949 201 HOH HOH . F 4 HOH A 50 950 174 HOH HOH . F 4 HOH A 51 951 81 HOH HOH . F 4 HOH A 52 952 167 HOH HOH . F 4 HOH A 53 953 135 HOH HOH . F 4 HOH A 54 954 175 HOH HOH . F 4 HOH A 55 955 168 HOH HOH . F 4 HOH A 56 956 166 HOH HOH . F 4 HOH A 57 957 178 HOH HOH . F 4 HOH A 58 958 171 HOH HOH . F 4 HOH A 59 959 217 HOH HOH . F 4 HOH A 60 960 170 HOH HOH . F 4 HOH A 61 961 154 HOH HOH . F 4 HOH A 62 962 155 HOH HOH . F 4 HOH A 63 963 143 HOH HOH . F 4 HOH A 64 964 219 HOH HOH . F 4 HOH A 65 965 100 HOH HOH . F 4 HOH A 66 966 138 HOH HOH . F 4 HOH A 67 967 21 HOH HOH . F 4 HOH A 68 968 205 HOH HOH . F 4 HOH A 69 969 165 HOH HOH . F 4 HOH A 70 970 173 HOH HOH . F 4 HOH A 71 971 95 HOH HOH . F 4 HOH A 72 972 49 HOH HOH . F 4 HOH A 73 973 91 HOH HOH . F 4 HOH A 74 974 163 HOH HOH . F 4 HOH A 75 975 40 HOH HOH . F 4 HOH A 76 976 169 HOH HOH . F 4 HOH A 77 977 98 HOH HOH . F 4 HOH A 78 978 10 HOH HOH . F 4 HOH A 79 979 77 HOH HOH . F 4 HOH A 80 980 41 HOH HOH . F 4 HOH A 81 981 80 HOH HOH . F 4 HOH A 82 982 191 HOH HOH . G 4 HOH B 1 901 212 HOH HOH . G 4 HOH B 2 902 119 HOH HOH . G 4 HOH B 3 903 211 HOH HOH . G 4 HOH B 4 904 19 HOH HOH . G 4 HOH B 5 905 185 HOH HOH . G 4 HOH B 6 906 25 HOH HOH . G 4 HOH B 7 907 121 HOH HOH . G 4 HOH B 8 908 62 HOH HOH . G 4 HOH B 9 909 202 HOH HOH . G 4 HOH B 10 910 133 HOH HOH . G 4 HOH B 11 911 199 HOH HOH . G 4 HOH B 12 912 207 HOH HOH . G 4 HOH B 13 913 115 HOH HOH . G 4 HOH B 14 914 122 HOH HOH . G 4 HOH B 15 915 196 HOH HOH . G 4 HOH B 16 916 218 HOH HOH . G 4 HOH B 17 917 14 HOH HOH . G 4 HOH B 18 918 187 HOH HOH . G 4 HOH B 19 919 184 HOH HOH . G 4 HOH B 20 920 8 HOH HOH . G 4 HOH B 21 921 188 HOH HOH . G 4 HOH B 22 922 182 HOH HOH . G 4 HOH B 23 923 213 HOH HOH . G 4 HOH B 24 924 221 HOH HOH . G 4 HOH B 25 925 68 HOH HOH . G 4 HOH B 26 926 132 HOH HOH . G 4 HOH B 27 927 145 HOH HOH . G 4 HOH B 28 928 123 HOH HOH . G 4 HOH B 29 929 78 HOH HOH . G 4 HOH B 30 930 24 HOH HOH . G 4 HOH B 31 931 117 HOH HOH . G 4 HOH B 32 932 56 HOH HOH . G 4 HOH B 33 933 105 HOH HOH . G 4 HOH B 34 934 208 HOH HOH . G 4 HOH B 35 935 129 HOH HOH . G 4 HOH B 36 936 12 HOH HOH . G 4 HOH B 37 937 179 HOH HOH . G 4 HOH B 38 938 198 HOH HOH . G 4 HOH B 39 939 28 HOH HOH . G 4 HOH B 40 940 140 HOH HOH . G 4 HOH B 41 941 116 HOH HOH . G 4 HOH B 42 942 181 HOH HOH . G 4 HOH B 43 943 137 HOH HOH . G 4 HOH B 44 944 131 HOH HOH . G 4 HOH B 45 945 85 HOH HOH . G 4 HOH B 46 946 16 HOH HOH . G 4 HOH B 47 947 203 HOH HOH . G 4 HOH B 48 948 161 HOH HOH . G 4 HOH B 49 949 126 HOH HOH . G 4 HOH B 50 950 215 HOH HOH . G 4 HOH B 51 951 200 HOH HOH . G 4 HOH B 52 952 214 HOH HOH . G 4 HOH B 53 953 146 HOH HOH . G 4 HOH B 54 954 3 HOH HOH . G 4 HOH B 55 955 192 HOH HOH . G 4 HOH B 56 956 9 HOH HOH . G 4 HOH B 57 957 220 HOH HOH . G 4 HOH B 58 958 210 HOH HOH . G 4 HOH B 59 959 120 HOH HOH . G 4 HOH B 60 960 31 HOH HOH . G 4 HOH B 61 961 128 HOH HOH . G 4 HOH B 62 962 183 HOH HOH . G 4 HOH B 63 963 36 HOH HOH . G 4 HOH B 64 964 84 HOH HOH . G 4 HOH B 65 965 160 HOH HOH . G 4 HOH B 66 966 29 HOH HOH . G 4 HOH B 67 967 26 HOH HOH . G 4 HOH B 68 968 59 HOH HOH . G 4 HOH B 69 969 22 HOH HOH . G 4 HOH B 70 970 74 HOH HOH . G 4 HOH B 71 971 46 HOH HOH . G 4 HOH B 72 972 17 HOH HOH . G 4 HOH B 73 973 130 HOH HOH . G 4 HOH B 74 974 193 HOH HOH . G 4 HOH B 75 975 20 HOH HOH . G 4 HOH B 76 976 45 HOH HOH . G 4 HOH B 77 977 57 HOH HOH . G 4 HOH B 78 978 67 HOH HOH . G 4 HOH B 79 979 147 HOH HOH . G 4 HOH B 80 980 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 19.172 -16.02 65.122 1 109.61 ? S DMS 801 B 1 HETATM 2 O O DMS . . . D 3 18.5 -16.105 63.818 1 109.54 ? O DMS 801 B 1 HETATM 3 C C1 DMS . . . D 3 20.749 -15.303 64.762 1 109.62 ? C1 DMS 801 B 1 HETATM 4 C C2 DMS . . . D 3 19.727 -17.669 65.447 1 109.56 ? C2 DMS 801 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #