data_7A4X # _model_server_result.job_id 5uI6kqMKBgyIvYPgyrxCNg _model_server_result.datetime_utc '2024-11-08 04:01:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 7A4X # _exptl.entry_id 7A4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7A4X _cell.length_a 128.122 _cell.length_b 128.122 _cell.length_c 114.408 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -19.068 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 332 A CYS 330 1_555 A SG CYS 332 A CYS 330 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 A SG CYS 320 A CYS 318 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 A SG CYS 322 A CYS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc3 A SG CYS 325 A CYS 323 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 A ND1 HIS 351 A HIS 349 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 7A4X _atom_sites.fract_transf_matrix[1][1] 0.007805 _atom_sites.fract_transf_matrix[1][2] 0.004506 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 GOL A 1 402 1 GOL GOL . D 3 GOL A 1 403 2 GOL GOL . E 4 DMS A 1 404 1 DMS DMS . F 5 EDO A 1 405 1 EDO EDO . G 6 HOH A 1 501 45 HOH HOH . G 6 HOH A 2 502 203 HOH HOH . G 6 HOH A 3 503 172 HOH HOH . G 6 HOH A 4 504 119 HOH HOH . G 6 HOH A 5 505 93 HOH HOH . G 6 HOH A 6 506 85 HOH HOH . G 6 HOH A 7 507 191 HOH HOH . G 6 HOH A 8 508 152 HOH HOH . G 6 HOH A 9 509 24 HOH HOH . G 6 HOH A 10 510 200 HOH HOH . G 6 HOH A 11 511 168 HOH HOH . G 6 HOH A 12 512 170 HOH HOH . G 6 HOH A 13 513 130 HOH HOH . G 6 HOH A 14 514 117 HOH HOH . G 6 HOH A 15 515 40 HOH HOH . G 6 HOH A 16 516 53 HOH HOH . G 6 HOH A 17 517 72 HOH HOH . G 6 HOH A 18 518 96 HOH HOH . G 6 HOH A 19 519 150 HOH HOH . G 6 HOH A 20 520 91 HOH HOH . G 6 HOH A 21 521 17 HOH HOH . G 6 HOH A 22 522 79 HOH HOH . G 6 HOH A 23 523 183 HOH HOH . G 6 HOH A 24 524 26 HOH HOH . G 6 HOH A 25 525 9 HOH HOH . G 6 HOH A 26 526 27 HOH HOH . G 6 HOH A 27 527 67 HOH HOH . G 6 HOH A 28 528 210 HOH HOH . G 6 HOH A 29 529 201 HOH HOH . G 6 HOH A 30 530 81 HOH HOH . G 6 HOH A 31 531 14 HOH HOH . G 6 HOH A 32 532 47 HOH HOH . G 6 HOH A 33 533 33 HOH HOH . G 6 HOH A 34 534 112 HOH HOH . G 6 HOH A 35 535 16 HOH HOH . G 6 HOH A 36 536 134 HOH HOH . G 6 HOH A 37 537 48 HOH HOH . G 6 HOH A 38 538 108 HOH HOH . G 6 HOH A 39 539 7 HOH HOH . G 6 HOH A 40 540 205 HOH HOH . G 6 HOH A 41 541 13 HOH HOH . G 6 HOH A 42 542 5 HOH HOH . G 6 HOH A 43 543 139 HOH HOH . G 6 HOH A 44 544 34 HOH HOH . G 6 HOH A 45 545 23 HOH HOH . G 6 HOH A 46 546 3 HOH HOH . G 6 HOH A 47 547 10 HOH HOH . G 6 HOH A 48 548 71 HOH HOH . G 6 HOH A 49 549 62 HOH HOH . G 6 HOH A 50 550 100 HOH HOH . G 6 HOH A 51 551 20 HOH HOH . G 6 HOH A 52 552 103 HOH HOH . G 6 HOH A 53 553 30 HOH HOH . G 6 HOH A 54 554 199 HOH HOH . G 6 HOH A 55 555 174 HOH HOH . G 6 HOH A 56 556 196 HOH HOH . G 6 HOH A 57 557 56 HOH HOH . G 6 HOH A 58 558 18 HOH HOH . G 6 HOH A 59 559 140 HOH HOH . G 6 HOH A 60 560 39 HOH HOH . G 6 HOH A 61 561 99 HOH HOH . G 6 HOH A 62 562 110 HOH HOH . G 6 HOH A 63 563 75 HOH HOH . G 6 HOH A 64 564 138 HOH HOH . G 6 HOH A 65 565 8 HOH HOH . G 6 HOH A 66 566 42 HOH HOH . G 6 HOH A 67 567 132 HOH HOH . G 6 HOH A 68 568 50 HOH HOH . G 6 HOH A 69 569 186 HOH HOH . G 6 HOH A 70 570 12 HOH HOH . G 6 HOH A 71 571 66 HOH HOH . G 6 HOH A 72 572 6 HOH HOH . G 6 HOH A 73 573 86 HOH HOH . G 6 HOH A 74 574 25 HOH HOH . G 6 HOH A 75 575 32 HOH HOH . G 6 HOH A 76 576 101 HOH HOH . G 6 HOH A 77 577 194 HOH HOH . G 6 HOH A 78 578 68 HOH HOH . G 6 HOH A 79 579 4 HOH HOH . G 6 HOH A 80 580 63 HOH HOH . G 6 HOH A 81 581 111 HOH HOH . G 6 HOH A 82 582 118 HOH HOH . G 6 HOH A 83 583 129 HOH HOH . G 6 HOH A 84 584 173 HOH HOH . G 6 HOH A 85 585 38 HOH HOH . G 6 HOH A 86 586 178 HOH HOH . G 6 HOH A 87 587 176 HOH HOH . G 6 HOH A 88 588 141 HOH HOH . G 6 HOH A 89 589 2 HOH HOH . G 6 HOH A 90 590 136 HOH HOH . G 6 HOH A 91 591 19 HOH HOH . G 6 HOH A 92 592 128 HOH HOH . G 6 HOH A 93 593 46 HOH HOH . G 6 HOH A 94 594 64 HOH HOH . G 6 HOH A 95 595 43 HOH HOH . G 6 HOH A 96 596 61 HOH HOH . G 6 HOH A 97 597 143 HOH HOH . G 6 HOH A 98 598 122 HOH HOH . G 6 HOH A 99 599 195 HOH HOH . G 6 HOH A 100 600 133 HOH HOH . G 6 HOH A 101 601 55 HOH HOH . G 6 HOH A 102 602 109 HOH HOH . G 6 HOH A 103 603 126 HOH HOH . G 6 HOH A 104 604 22 HOH HOH . G 6 HOH A 105 605 35 HOH HOH . G 6 HOH A 106 606 137 HOH HOH . G 6 HOH A 107 607 145 HOH HOH . G 6 HOH A 108 608 124 HOH HOH . G 6 HOH A 109 609 11 HOH HOH . G 6 HOH A 110 610 74 HOH HOH . G 6 HOH A 111 611 1 HOH HOH . G 6 HOH A 112 612 44 HOH HOH . G 6 HOH A 113 613 209 HOH HOH . G 6 HOH A 114 614 73 HOH HOH . G 6 HOH A 115 615 90 HOH HOH . G 6 HOH A 116 616 95 HOH HOH . G 6 HOH A 117 617 157 HOH HOH . G 6 HOH A 118 618 15 HOH HOH . G 6 HOH A 119 619 31 HOH HOH . G 6 HOH A 120 620 65 HOH HOH . G 6 HOH A 121 621 84 HOH HOH . G 6 HOH A 122 622 193 HOH HOH . G 6 HOH A 123 623 54 HOH HOH . G 6 HOH A 124 624 60 HOH HOH . G 6 HOH A 125 625 78 HOH HOH . G 6 HOH A 126 626 97 HOH HOH . G 6 HOH A 127 627 21 HOH HOH . G 6 HOH A 128 628 155 HOH HOH . G 6 HOH A 129 629 151 HOH HOH . G 6 HOH A 130 630 116 HOH HOH . G 6 HOH A 131 631 197 HOH HOH . G 6 HOH A 132 632 58 HOH HOH . G 6 HOH A 133 633 144 HOH HOH . G 6 HOH A 134 634 52 HOH HOH . G 6 HOH A 135 635 69 HOH HOH . G 6 HOH A 136 636 149 HOH HOH . G 6 HOH A 137 637 169 HOH HOH . G 6 HOH A 138 638 98 HOH HOH . G 6 HOH A 139 639 59 HOH HOH . G 6 HOH A 140 640 29 HOH HOH . G 6 HOH A 141 641 83 HOH HOH . G 6 HOH A 142 642 131 HOH HOH . G 6 HOH A 143 643 70 HOH HOH . G 6 HOH A 144 644 57 HOH HOH . G 6 HOH A 145 645 163 HOH HOH . G 6 HOH A 146 646 212 HOH HOH . G 6 HOH A 147 647 208 HOH HOH . G 6 HOH A 148 648 120 HOH HOH . G 6 HOH A 149 649 28 HOH HOH . G 6 HOH A 150 650 146 HOH HOH . G 6 HOH A 151 651 189 HOH HOH . G 6 HOH A 152 652 148 HOH HOH . G 6 HOH A 153 653 181 HOH HOH . G 6 HOH A 154 654 167 HOH HOH . G 6 HOH A 155 655 41 HOH HOH . G 6 HOH A 156 656 89 HOH HOH . G 6 HOH A 157 657 106 HOH HOH . G 6 HOH A 158 658 164 HOH HOH . G 6 HOH A 159 659 198 HOH HOH . G 6 HOH A 160 660 88 HOH HOH . G 6 HOH A 161 661 214 HOH HOH . G 6 HOH A 162 662 215 HOH HOH . G 6 HOH A 163 663 165 HOH HOH . G 6 HOH A 164 664 107 HOH HOH . G 6 HOH A 165 665 202 HOH HOH . G 6 HOH A 166 666 213 HOH HOH . G 6 HOH A 167 667 185 HOH HOH . G 6 HOH A 168 668 105 HOH HOH . G 6 HOH A 169 669 77 HOH HOH . G 6 HOH A 170 670 216 HOH HOH . G 6 HOH A 171 671 162 HOH HOH . G 6 HOH A 172 672 104 HOH HOH . G 6 HOH A 173 673 180 HOH HOH . G 6 HOH A 174 674 80 HOH HOH . G 6 HOH A 175 675 161 HOH HOH . G 6 HOH A 176 676 113 HOH HOH . G 6 HOH A 177 677 206 HOH HOH . G 6 HOH A 178 678 76 HOH HOH . G 6 HOH A 179 679 207 HOH HOH . G 6 HOH A 180 680 142 HOH HOH . G 6 HOH A 181 681 87 HOH HOH . G 6 HOH A 182 682 127 HOH HOH . G 6 HOH A 183 683 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 -22.622 -51.218 -12.134 1 59.08 ? C1 EDO 405 A 1 HETATM 2 O O1 EDO . . . F 5 -21.59 -50.317 -12.551 1 66.1 ? O1 EDO 405 A 1 HETATM 3 C C2 EDO . . . F 5 -23.074 -50.832 -10.734 1 52.38 ? C2 EDO 405 A 1 HETATM 4 O O2 EDO . . . F 5 -22.854 -51.932 -9.843 1 42.27 ? O2 EDO 405 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #