data_7A5V # _model_server_result.job_id C7HxBjT7DfgqEG6gGNNumw _model_server_result.datetime_utc '2024-12-03 18:59:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":5410}' # _entry.id 7A5V # _exptl.entry_id 7A5V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 35.453 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7A5V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details author_and_software_defined_assembly _pdbx_struct_assembly.oligomeric_details pentamer _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 3 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 4 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.309017 -0.951057 0 0.951057 0.309017 0 0 0 1 239.91182 -37.9983 0 3 'point symmetry operation' ? ? -0.809017 -0.587785 0 0.587785 -0.809017 0 0 0 1 350.18719 178.42929 0 4 'point symmetry operation' ? ? -0.809017 0.587785 0 -0.587785 -0.809017 0 0 0 1 178.42929 350.18719 0 5 'point symmetry operation' ? ? 0.309017 0.951057 0 -0.951057 0.309017 0 0 0 1 -37.9983 239.91182 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 M N N ? 10 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG A 2000 NAG 3 n C NAG 2 B 2 NAG A 5803 NAG 4 n D NAG 1 C 1 NAG A 3000 NAG 4 n D NAG 2 C 2 NAG A 3001 NAG 4 n D BMA 3 C 3 BMA A 3002 BMA 4 n D MAN 4 C 4 MAN A 3008 MAN 4 n D MAN 5 C 5 MAN A 3003 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 191 A CYS 136 1_555 A SG CYS 205 A CYS 150 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 B SG CYS 409 O CYS 409 1_555 B SG CYS 483 O CYS 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? covale ? covale1 A ND2 ASN 63 A ASN 8 1_555 I C1 NAG . A NAG 5405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 135 A ASN 80 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 204 A ASN 149 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale4 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? covale ? covale6 D O4 NAG . C NAG 2 1_555 D C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale7 D O3 BMA . C BMA 3 1_555 D C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 D O6 BMA . C BMA 3 1_555 D C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7A5V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 R16 A 1 5401 5401 R16 R16 . F 6 D10 A 1 5402 5501 D10 D10 . G 6 D10 A 1 5403 5601 D10 D10 . H 6 D10 A 1 5404 5701 D10 D10 . I 7 NAG A 1 5405 5802 NAG NAG . J 6 D10 A 1 5406 5901 D10 D10 . K 8 OCT A 1 5407 6001 OCT OCT . L 9 HSM A 1 5408 4001 HSM HSM . M 10 CL A 1 5409 5334 CL CL . N 10 CL A 1 5410 5339 CL CL . O 11 HOH A 1 5501 5049 HOH HOH . O 11 HOH A 2 5502 5105 HOH HOH . O 11 HOH A 3 5503 5167 HOH HOH . O 11 HOH A 4 5504 5136 HOH HOH . O 11 HOH A 5 5505 5283 HOH HOH . O 11 HOH A 6 5506 5121 HOH HOH . O 11 HOH A 7 5507 5017 HOH HOH . O 11 HOH A 8 5508 5294 HOH HOH . O 11 HOH A 9 5509 5135 HOH HOH . O 11 HOH A 10 5510 5211 HOH HOH . O 11 HOH A 11 5511 5056 HOH HOH . O 11 HOH A 12 5512 5067 HOH HOH . O 11 HOH A 13 5513 5026 HOH HOH . O 11 HOH A 14 5514 5284 HOH HOH . O 11 HOH A 15 5515 5066 HOH HOH . O 11 HOH A 16 5516 5098 HOH HOH . O 11 HOH A 17 5517 5164 HOH HOH . O 11 HOH A 18 5518 5012 HOH HOH . O 11 HOH A 19 5519 5160 HOH HOH . O 11 HOH A 20 5520 5089 HOH HOH . O 11 HOH A 21 5521 5070 HOH HOH . O 11 HOH A 22 5522 5306 HOH HOH . O 11 HOH A 23 5523 5079 HOH HOH . O 11 HOH A 24 5524 5129 HOH HOH . O 11 HOH A 25 5525 5333 HOH HOH . O 11 HOH A 26 5526 5097 HOH HOH . O 11 HOH A 27 5527 5147 HOH HOH . O 11 HOH A 28 5528 5029 HOH HOH . O 11 HOH A 29 5529 5030 HOH HOH . O 11 HOH A 30 5530 5078 HOH HOH . O 11 HOH A 31 5531 5059 HOH HOH . O 11 HOH A 32 5532 5310 HOH HOH . O 11 HOH A 33 5533 5101 HOH HOH . O 11 HOH A 34 5534 5014 HOH HOH . O 11 HOH A 35 5535 5036 HOH HOH . O 11 HOH A 36 5536 5180 HOH HOH . O 11 HOH A 37 5537 5028 HOH HOH . O 11 HOH A 38 5538 5204 HOH HOH . O 11 HOH A 39 5539 5114 HOH HOH . O 11 HOH A 40 5540 5088 HOH HOH . O 11 HOH A 41 5541 5166 HOH HOH . O 11 HOH A 42 5542 5093 HOH HOH . O 11 HOH A 43 5543 5140 HOH HOH . O 11 HOH A 44 5544 5215 HOH HOH . O 11 HOH A 45 5545 5065 HOH HOH . O 11 HOH A 46 5546 5335 HOH HOH . O 11 HOH A 47 5547 5074 HOH HOH . O 11 HOH A 48 5548 5131 HOH HOH . O 11 HOH A 49 5549 5073 HOH HOH . O 11 HOH A 50 5550 5134 HOH HOH . O 11 HOH A 51 5551 5117 HOH HOH . O 11 HOH A 52 5552 5314 HOH HOH . O 11 HOH A 53 5553 5173 HOH HOH . O 11 HOH A 54 5554 5300 HOH HOH . O 11 HOH A 55 5555 5001 HOH HOH . O 11 HOH A 56 5556 5170 HOH HOH . O 11 HOH A 57 5557 5081 HOH HOH . O 11 HOH A 58 5558 5299 HOH HOH . O 11 HOH A 59 5559 5205 HOH HOH . O 11 HOH A 60 5560 5109 HOH HOH . O 11 HOH A 61 5561 5145 HOH HOH . O 11 HOH A 62 5562 5231 HOH HOH . O 11 HOH A 63 5563 5037 HOH HOH . O 11 HOH A 64 5564 5106 HOH HOH . O 11 HOH A 65 5565 5072 HOH HOH . O 11 HOH A 66 5566 5044 HOH HOH . O 11 HOH A 67 5567 5003 HOH HOH . O 11 HOH A 68 5568 5048 HOH HOH . O 11 HOH A 69 5569 5069 HOH HOH . O 11 HOH A 70 5570 5024 HOH HOH . O 11 HOH A 71 5571 5038 HOH HOH . O 11 HOH A 72 5572 5124 HOH HOH . O 11 HOH A 73 5573 5009 HOH HOH . O 11 HOH A 74 5574 5305 HOH HOH . O 11 HOH A 75 5575 5071 HOH HOH . O 11 HOH A 76 5576 5031 HOH HOH . O 11 HOH A 77 5577 5040 HOH HOH . O 11 HOH A 78 5578 5302 HOH HOH . O 11 HOH A 79 5579 5157 HOH HOH . O 11 HOH A 80 5580 5007 HOH HOH . O 11 HOH A 81 5581 5169 HOH HOH . O 11 HOH A 82 5582 5104 HOH HOH . O 11 HOH A 83 5583 5143 HOH HOH . O 11 HOH A 84 5584 5194 HOH HOH . O 11 HOH A 85 5585 5116 HOH HOH . O 11 HOH A 86 5586 5315 HOH HOH . O 11 HOH A 87 5587 5144 HOH HOH . O 11 HOH A 88 5588 5033 HOH HOH . O 11 HOH A 89 5589 5002 HOH HOH . O 11 HOH A 90 5590 5051 HOH HOH . O 11 HOH A 91 5591 5061 HOH HOH . O 11 HOH A 92 5592 5176 HOH HOH . O 11 HOH A 93 5593 5292 HOH HOH . O 11 HOH A 94 5594 5206 HOH HOH . O 11 HOH A 95 5595 5006 HOH HOH . O 11 HOH A 96 5596 5023 HOH HOH . O 11 HOH A 97 5597 5182 HOH HOH . O 11 HOH A 98 5598 5075 HOH HOH . O 11 HOH A 99 5599 5084 HOH HOH . O 11 HOH A 100 5600 5146 HOH HOH . O 11 HOH A 101 5601 5127 HOH HOH . O 11 HOH A 102 5602 5045 HOH HOH . O 11 HOH A 103 5603 5115 HOH HOH . O 11 HOH A 104 5604 5102 HOH HOH . O 11 HOH A 105 5605 5295 HOH HOH . O 11 HOH A 106 5606 5063 HOH HOH . O 11 HOH A 107 5607 5336 HOH HOH . O 11 HOH A 108 5608 5083 HOH HOH . O 11 HOH A 109 5609 5217 HOH HOH . O 11 HOH A 110 5610 5171 HOH HOH . O 11 HOH A 111 5611 5172 HOH HOH . O 11 HOH A 112 5612 5338 HOH HOH . O 11 HOH A 113 5613 5015 HOH HOH . O 11 HOH A 114 5614 5303 HOH HOH . O 11 HOH A 115 5615 5120 HOH HOH . O 11 HOH A 116 5616 5090 HOH HOH . O 11 HOH A 117 5617 5060 HOH HOH . O 11 HOH A 118 5618 5100 HOH HOH . O 11 HOH A 119 5619 5308 HOH HOH . O 11 HOH A 120 5620 5178 HOH HOH . O 11 HOH A 121 5621 5132 HOH HOH . O 11 HOH A 122 5622 5187 HOH HOH . O 11 HOH A 123 5623 5108 HOH HOH . O 11 HOH A 124 5624 5041 HOH HOH . O 11 HOH A 125 5625 5058 HOH HOH . O 11 HOH A 126 5626 5076 HOH HOH . O 11 HOH A 127 5627 5016 HOH HOH . O 11 HOH A 128 5628 5087 HOH HOH . O 11 HOH A 129 5629 5035 HOH HOH . O 11 HOH A 130 5630 5054 HOH HOH . O 11 HOH A 131 5631 5050 HOH HOH . O 11 HOH A 132 5632 5239 HOH HOH . O 11 HOH A 133 5633 5043 HOH HOH . O 11 HOH A 134 5634 5222 HOH HOH . O 11 HOH A 135 5635 5316 HOH HOH . O 11 HOH A 136 5636 5096 HOH HOH . O 11 HOH A 137 5637 5141 HOH HOH . O 11 HOH A 138 5638 5080 HOH HOH . O 11 HOH A 139 5639 5122 HOH HOH . O 11 HOH A 140 5640 5119 HOH HOH . O 11 HOH A 141 5641 5279 HOH HOH . O 11 HOH A 142 5642 5192 HOH HOH . O 11 HOH A 143 5643 5032 HOH HOH . O 11 HOH A 144 5644 5039 HOH HOH . O 11 HOH A 145 5645 5013 HOH HOH . O 11 HOH A 146 5646 5278 HOH HOH . O 11 HOH A 147 5647 5086 HOH HOH . O 11 HOH A 148 5648 5280 HOH HOH . O 11 HOH A 149 5649 5319 HOH HOH . O 11 HOH A 150 5650 5317 HOH HOH . O 11 HOH A 151 5651 5046 HOH HOH . O 11 HOH A 152 5652 5077 HOH HOH . O 11 HOH A 153 5653 5062 HOH HOH . O 11 HOH A 154 5654 5188 HOH HOH . O 11 HOH A 155 5655 5091 HOH HOH . O 11 HOH A 156 5656 5255 HOH HOH . O 11 HOH A 157 5657 5055 HOH HOH . O 11 HOH A 158 5658 5053 HOH HOH . O 11 HOH A 159 5659 5112 HOH HOH . O 11 HOH A 160 5660 5307 HOH HOH . O 11 HOH A 161 5661 5137 HOH HOH . O 11 HOH A 162 5662 5208 HOH HOH . O 11 HOH A 163 5663 5110 HOH HOH . O 11 HOH A 164 5664 5260 HOH HOH . O 11 HOH A 165 5665 5287 HOH HOH . O 11 HOH A 166 5666 5191 HOH HOH . O 11 HOH A 167 5667 5281 HOH HOH . O 11 HOH A 168 5668 5227 HOH HOH . O 11 HOH A 169 5669 5094 HOH HOH . O 11 HOH A 170 5670 5219 HOH HOH . O 11 HOH A 171 5671 5150 HOH HOH . O 11 HOH A 172 5672 5225 HOH HOH . O 11 HOH A 173 5673 5138 HOH HOH . O 11 HOH A 174 5674 5179 HOH HOH . O 11 HOH A 175 5675 5324 HOH HOH . O 11 HOH A 176 5676 5251 HOH HOH . O 11 HOH A 177 5677 5165 HOH HOH . O 11 HOH A 178 5678 5285 HOH HOH . O 11 HOH A 179 5679 5184 HOH HOH . O 11 HOH A 180 5680 5244 HOH HOH . O 11 HOH A 181 5681 5174 HOH HOH . O 11 HOH A 182 5682 5130 HOH HOH . O 11 HOH A 183 5683 5189 HOH HOH . O 11 HOH A 184 5684 5168 HOH HOH . O 11 HOH A 185 5685 5185 HOH HOH . O 11 HOH A 186 5686 5328 HOH HOH . O 11 HOH A 187 5687 5175 HOH HOH . O 11 HOH A 188 5688 5113 HOH HOH . O 11 HOH A 189 5689 5162 HOH HOH . O 11 HOH A 190 5690 5025 HOH HOH . O 11 HOH A 191 5691 5293 HOH HOH . O 11 HOH A 192 5692 5202 HOH HOH . O 11 HOH A 193 5693 5286 HOH HOH . P 11 HOH O 1 601 5152 HOH HOH . P 11 HOH O 2 602 5095 HOH HOH . P 11 HOH O 3 603 5092 HOH HOH . P 11 HOH O 4 604 5288 HOH HOH . P 11 HOH O 5 605 5047 HOH HOH . P 11 HOH O 6 606 5331 HOH HOH . P 11 HOH O 7 607 5163 HOH HOH . P 11 HOH O 8 608 5201 HOH HOH . P 11 HOH O 9 609 5322 HOH HOH . P 11 HOH O 10 610 5296 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 10 _atom_site.Cartn_x 134.858 _atom_site.Cartn_y 145.413 _atom_site.Cartn_z 123.407 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 5410 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #