data_7A69
#
_model_server_result.job_id            qV6jId6ibhmxuRhY1UCfYQ 
_model_server_result.datetime_utc      '2025-02-17 06:58:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7a69 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1400}' 
#
_entry.id    7A69 
#
_exptl.entry_id    7A69 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              824.958 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            vincristine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 23 B CYS 23 1_555 B SG CYS 93 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 B SG CYS 139 B CYS 139 1_555 B SG CYS 199 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 B SG CYS 219 B CYS 220 1_555 C SG CYS 134 C CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 C SG CYS 22 C CYS 21 1_555 C SG CYS 96 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf5 C SG CYS 146 C CYS 145 1_555 C SG CYS 201 C CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C46 H56 N4 O10' 
_chem_comp.formula_weight    824.958 
_chem_comp.id                R1Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              vincristine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C09 R1Q doub 352 n y 
C10 C11 R1Q sing 353 n y 
C13 C12 R1Q sing 354 n y 
C13 C14 R1Q doub 355 n y 
C15 C20 R1Q sing 356 n n 
C15 C07 R1Q sing 357 n n 
C15 C16 R1Q sing 358 n n 
C15 C54 R1Q sing 359 n n 
C20 C21 R1Q doub 360 n y 
C20 C25 R1Q sing 361 n y 
C21 C22 R1Q sing 362 n y 
C22 C23 R1Q doub 363 n y 
C22 C52 R1Q sing 364 n n 
C24 C23 R1Q sing 365 n y 
C24 C25 R1Q doub 366 n y 
C01 C02 R1Q sing 367 n n 
C01 C54 R1Q sing 368 n n 
C01 C60 R1Q sing 369 n n 
C02 N03 R1Q sing 370 n n 
C04 C05 R1Q sing 371 n n 
C04 N03 R1Q sing 372 n n 
C05 C06 R1Q sing 373 n n 
C06 C07 R1Q doub 374 n y 
C06 C14 R1Q sing 375 n y 
C07 N08 R1Q sing 376 n y 
C09 C14 R1Q sing 377 n y 
C09 N08 R1Q sing 378 n y 
C11 C12 R1Q doub 379 n y 
C16 O17 R1Q doub 380 n n 
C16 O18 R1Q sing 381 n n 
C19 O18 R1Q sing 382 n n 
C23 N28 R1Q sing 383 n n 
C25 O26 R1Q sing 384 n n 
C27 O26 R1Q sing 385 n n 
C29 N28 R1Q sing 386 n n 
C29 O30 R1Q doub 387 n n 
C31 C32 R1Q sing 388 n n 
C31 C52 R1Q sing 389 n n 
C31 N28 R1Q sing 390 n n 
C32 C34 R1Q sing 391 n n 
C32 C38 R1Q sing 392 n n 
C32 O33 R1Q sing 393 n n 
C34 O35 R1Q doub 394 n n 
C34 O36 R1Q sing 395 n n 
C37 O36 R1Q sing 396 n n 
C38 C43 R1Q sing 397 n n 
C38 O39 R1Q sing 398 n n 
C40 C41 R1Q sing 399 n n 
C40 O39 R1Q sing 400 n n 
C40 O42 R1Q doub 401 n n 
C43 C44 R1Q sing 402 n n 
C43 C46 R1Q sing 403 n n 
C43 C53 R1Q sing 404 n n 
C44 C45 R1Q sing 405 n n 
C46 C47 R1Q doub 406 n n 
C47 C48 R1Q sing 407 n n 
C48 N49 R1Q sing 408 n n 
C50 C51 R1Q sing 409 n n 
C50 N49 R1Q sing 410 n n 
C51 C52 R1Q sing 411 n n 
C52 C53 R1Q sing 412 n n 
C53 N49 R1Q sing 413 n n 
C55 C56 R1Q sing 414 n n 
C55 N03 R1Q sing 415 n n 
C56 C58 R1Q sing 416 n n 
C56 C60 R1Q sing 417 n n 
C56 O57 R1Q sing 418 n n 
C58 C59 R1Q sing 419 n n 
C10 H1 R1Q sing 420 n n 
C13 H2 R1Q sing 421 n n 
C21 H3 R1Q sing 422 n n 
C24 H4 R1Q sing 423 n n 
C01 H5 R1Q sing 424 n n 
C02 H6 R1Q sing 425 n n 
C02 H7 R1Q sing 426 n n 
C04 H8 R1Q sing 427 n n 
C04 H9 R1Q sing 428 n n 
C05 H10 R1Q sing 429 n n 
C05 H11 R1Q sing 430 n n 
C11 H12 R1Q sing 431 n n 
C12 H13 R1Q sing 432 n n 
C19 H14 R1Q sing 433 n n 
C19 H15 R1Q sing 434 n n 
C19 H16 R1Q sing 435 n n 
C27 H17 R1Q sing 436 n n 
C27 H18 R1Q sing 437 n n 
C27 H19 R1Q sing 438 n n 
C29 H20 R1Q sing 439 n n 
C31 H21 R1Q sing 440 n n 
C37 H22 R1Q sing 441 n n 
C37 H23 R1Q sing 442 n n 
C37 H24 R1Q sing 443 n n 
C38 H25 R1Q sing 444 n n 
C41 H26 R1Q sing 445 n n 
C41 H27 R1Q sing 446 n n 
C41 H28 R1Q sing 447 n n 
C44 H29 R1Q sing 448 n n 
C44 H30 R1Q sing 449 n n 
C45 H31 R1Q sing 450 n n 
C45 H32 R1Q sing 451 n n 
C45 H33 R1Q sing 452 n n 
C46 H34 R1Q sing 453 n n 
C47 H35 R1Q sing 454 n n 
C48 H36 R1Q sing 455 n n 
C48 H37 R1Q sing 456 n n 
C50 H38 R1Q sing 457 n n 
C50 H39 R1Q sing 458 n n 
C51 H40 R1Q sing 459 n n 
C51 H41 R1Q sing 460 n n 
C53 H42 R1Q sing 461 n n 
C54 H43 R1Q sing 462 n n 
C54 H44 R1Q sing 463 n n 
C55 H45 R1Q sing 464 n n 
C55 H46 R1Q sing 465 n n 
C58 H47 R1Q sing 466 n n 
C58 H48 R1Q sing 467 n n 
C59 H49 R1Q sing 468 n n 
C59 H50 R1Q sing 469 n n 
C59 H51 R1Q sing 470 n n 
C60 H52 R1Q sing 471 n n 
C60 H53 R1Q sing 472 n n 
N08 H55 R1Q sing 473 n n 
O33 H57 R1Q sing 474 n n 
O57 H58 R1Q sing 475 n n 
#
_atom_sites.entry_id                     7A69 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 R1Q A 1 1400 1400 R1Q LIG . 
E 5 CLR A 1 1401 1401 CLR CLR . 
F 5 CLR A 1 1402 1402 CLR CLR . 
G 5 CLR A 1 1403 1403 CLR CLR . 
H 5 CLR A 1 1404 1404 CLR CLR . 
I 5 CLR A 1 1405 1405 CLR CLR . 
J 5 CLR A 1 1406 1406 CLR CLR . 
K 5 CLR A 1 1407 1407 CLR CLR . 
L 5 CLR A 1 1408 1408 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 R1Q . . . D 4 161.221 164.933 162.99 1 31.06 ? C10 R1Q 1400 A 1 
HETATM 2 C C13 R1Q . . . D 4 163.164 164.719 165.059 1 31.06 ? C13 R1Q 1400 A 1 
HETATM 3 C C15 R1Q . . . D 4 162.378 159.872 163.07 1 31.06 ? C15 R1Q 1400 A 1 
HETATM 4 C C20 R1Q . . . D 4 162.628 159.702 161.516 1 31.06 ? C20 R1Q 1400 A 1 
HETATM 5 C C21 R1Q . . . D 4 162.815 160.893 160.737 1 31.06 ? C21 R1Q 1400 A 1 
HETATM 6 C C22 R1Q . . . D 4 163.048 160.831 159.346 1 31.06 ? C22 R1Q 1400 A 1 
HETATM 7 C C24 R1Q . . . D 4 162.91 158.333 159.408 1 31.06 ? C24 R1Q 1400 A 1 
HETATM 8 C C01 R1Q . . . D 4 164.757 158.939 163.174 1 31.06 ? C01 R1Q 1400 A 1 
HETATM 9 C C02 R1Q . . . D 4 165.721 160.088 163.244 1 31.06 ? C02 R1Q 1400 A 1 
HETATM 10 C C04 R1Q . . . D 4 165.674 161.705 164.972 1 31.06 ? C04 R1Q 1400 A 1 
HETATM 11 C C05 R1Q . . . D 4 164.183 161.886 165.53 1 31.06 ? C05 R1Q 1400 A 1 
HETATM 12 C C06 R1Q . . . D 4 163.071 162.215 164.373 1 31.06 ? C06 R1Q 1400 A 1 
HETATM 13 C C07 R1Q . . . D 4 162.282 161.461 163.35 1 31.06 ? C07 R1Q 1400 A 1 
HETATM 14 C C09 R1Q . . . D 4 161.789 163.692 163.317 1 31.06 ? C09 R1Q 1400 A 1 
HETATM 15 C C11 R1Q . . . D 4 161.626 166.071 163.7 1 31.06 ? C11 R1Q 1400 A 1 
HETATM 16 C C12 R1Q . . . D 4 162.601 165.961 164.732 1 31.06 ? C12 R1Q 1400 A 1 
HETATM 17 C C14 R1Q . . . D 4 162.755 163.585 164.347 1 31.06 ? C14 R1Q 1400 A 1 
HETATM 18 C C16 R1Q . . . D 4 161.04 159.229 163.496 1 31.06 ? C16 R1Q 1400 A 1 
HETATM 19 C C19 R1Q . . . D 4 159.773 158.097 165.152 1 31.06 ? C19 R1Q 1400 A 1 
HETATM 20 C C23 R1Q . . . D 4 163.1 159.523 158.67 1 31.06 ? C23 R1Q 1400 A 1 
HETATM 21 C C25 R1Q . . . D 4 162.674 158.402 160.84 1 31.06 ? C25 R1Q 1400 A 1 
HETATM 22 C C27 R1Q . . . D 4 161.227 156.654 161.378 1 31.06 ? C27 R1Q 1400 A 1 
HETATM 23 C C29 R1Q . . . D 4 164.073 159.072 156.126 1 31.06 ? C29 R1Q 1400 A 1 
HETATM 24 C C31 R1Q . . . D 4 162.807 161.075 156.931 1 31.06 ? C31 R1Q 1400 A 1 
HETATM 25 C C32 R1Q . . . D 4 161.173 160.94 156.741 1 31.06 ? C32 R1Q 1400 A 1 
HETATM 26 C C34 R1Q . . . D 4 160.751 159.4 156.925 1 31.06 ? C34 R1Q 1400 A 1 
HETATM 27 C C37 R1Q . . . D 4 161.133 157.17 156.216 1 31.06 ? C37 R1Q 1400 A 1 
HETATM 28 C C38 R1Q . . . D 4 160.494 161.671 157.664 1 31.06 ? C38 R1Q 1400 A 1 
HETATM 29 C C40 R1Q . . . D 4 158.269 160.959 158.523 1 31.06 ? C40 R1Q 1400 A 1 
HETATM 30 C C41 R1Q . . . D 4 156.77 160.62 158.428 1 31.06 ? C41 R1Q 1400 A 1 
HETATM 31 C C43 R1Q . . . D 4 160.954 163.043 157.876 1 31.06 ? C43 R1Q 1400 A 1 
HETATM 32 C C44 R1Q . . . D 4 159.881 163.792 158.709 1 31.06 ? C44 R1Q 1400 A 1 
HETATM 33 C C45 R1Q . . . D 4 159.944 163.425 160.214 1 31.06 ? C45 R1Q 1400 A 1 
HETATM 34 C C46 R1Q . . . D 4 161.038 163.836 156.568 1 31.06 ? C46 R1Q 1400 A 1 
HETATM 35 C C47 R1Q . . . D 4 162.208 164.531 156.268 1 31.06 ? C47 R1Q 1400 A 1 
HETATM 36 C C48 R1Q . . . D 4 163.401 164.445 157.251 1 31.06 ? C48 R1Q 1400 A 1 
HETATM 37 C C50 R1Q . . . D 4 164.292 163.864 158.633 1 31.06 ? C50 R1Q 1400 A 1 
HETATM 38 C C51 R1Q . . . D 4 164.424 162.29 158.356 1 31.06 ? C51 R1Q 1400 A 1 
HETATM 39 C C52 R1Q . . . D 4 163.208 161.832 158.368 1 31.06 ? C52 R1Q 1400 A 1 
HETATM 40 C C53 R1Q . . . D 4 162.244 163.059 158.689 1 31.06 ? C53 R1Q 1400 A 1 
HETATM 41 C C54 R1Q . . . D 4 163.409 159.199 163.828 1 31.06 ? C54 R1Q 1400 A 1 
HETATM 42 C C55 R1Q . . . D 4 166.489 159.295 165.514 1 31.06 ? C55 R1Q 1400 A 1 
HETATM 43 C C56 R1Q . . . D 4 165.729 157.968 165.293 1 31.06 ? C56 R1Q 1400 A 1 
HETATM 44 C C58 R1Q . . . D 4 166.647 156.806 165.764 1 31.06 ? C58 R1Q 1400 A 1 
HETATM 45 C C59 R1Q . . . D 4 165.939 156.032 166.912 1 31.06 ? C59 R1Q 1400 A 1 
HETATM 46 C C60 R1Q . . . D 4 165.313 157.682 163.853 1 31.06 ? C60 R1Q 1400 A 1 
HETATM 47 N N03 R1Q . . . D 4 165.893 160.389 164.605 1 31.06 ? N03 R1Q 1400 A 1 
HETATM 48 N N08 R1Q . . . D 4 161.554 162.385 162.779 1 31.06 ? N08 R1Q 1400 A 1 
HETATM 49 N N28 R1Q . . . D 4 163.356 159.865 157.12 1 31.06 ? N28 R1Q 1400 A 1 
HETATM 50 N N49 R1Q . . . D 4 163.009 164.239 158.499 1 31.06 ? N49 R1Q 1400 A 1 
HETATM 51 O O17 R1Q . . . D 4 160.038 159.539 162.952 1 31.06 ? O17 R1Q 1400 A 1 
HETATM 52 O O18 R1Q . . . D 4 161.028 158.271 164.533 1 31.06 ? O18 R1Q 1400 A 1 
HETATM 53 O O26 R1Q . . . D 4 162.508 157.213 161.576 1 31.06 ? O26 R1Q 1400 A 1 
HETATM 54 O O30 R1Q . . . D 4 164.179 159.49 155.023 1 31.06 ? O30 R1Q 1400 A 1 
HETATM 55 O O33 R1Q . . . D 4 160.839 161.286 155.411 1 31.06 ? O33 R1Q 1400 A 1 
HETATM 56 O O35 R1Q . . . D 4 160.386 159.006 157.98 1 31.06 ? O35 R1Q 1400 A 1 
HETATM 57 O O36 R1Q . . . D 4 160.83 158.501 155.832 1 31.06 ? O36 R1Q 1400 A 1 
HETATM 58 O O39 R1Q . . . D 4 158.936 161.633 157.471 1 31.06 ? O39 R1Q 1400 A 1 
HETATM 59 O O42 R1Q . . . D 4 158.861 160.647 159.494 1 31.06 ? O42 R1Q 1400 A 1 
HETATM 60 O O57 R1Q . . . D 4 164.609 157.952 166.153 1 31.06 ? O57 R1Q 1400 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           645 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           60 
#