data_7A6D # _model_server_result.job_id eHeWDlybzLBcVLbvjOU0tA _model_server_result.datetime_utc '2024-11-08 03:35:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 7A6D # _exptl.entry_id 7A6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7A6D _cell.length_a 127.868 _cell.length_b 127.868 _cell.length_c 115.189 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -19.198167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 332 A CYS 330 1_555 A SG CYS 332 A CYS 330 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc1 A SG CYS 320 A CYS 318 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 A SG CYS 322 A CYS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 A SG CYS 325 A CYS 323 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc4 A ND1 HIS 351 A HIS 349 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7A6D _atom_sites.fract_transf_matrix[1][1] 0.007821 _atom_sites.fract_transf_matrix[1][2] 0.004515 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 GOL A 1 402 1 GOL GOL . D 3 GOL A 1 403 2 GOL GOL . E 3 GOL A 1 404 4 GOL GOL . F 4 EDO A 1 405 2 EDO EDO . G 4 EDO A 1 406 3 EDO EDO . H 5 R1E A 1 407 1 R1E SOH . I 6 RGN A 1 408 1 RGN ROH . J 7 HOH A 1 501 179 HOH HOH . J 7 HOH A 2 502 214 HOH HOH . J 7 HOH A 3 503 254 HOH HOH . J 7 HOH A 4 504 238 HOH HOH . J 7 HOH A 5 505 185 HOH HOH . J 7 HOH A 6 506 231 HOH HOH . J 7 HOH A 7 507 246 HOH HOH . J 7 HOH A 8 508 180 HOH HOH . J 7 HOH A 9 509 237 HOH HOH . J 7 HOH A 10 510 164 HOH HOH . J 7 HOH A 11 511 62 HOH HOH . J 7 HOH A 12 512 78 HOH HOH . J 7 HOH A 13 513 204 HOH HOH . J 7 HOH A 14 514 226 HOH HOH . J 7 HOH A 15 515 196 HOH HOH . J 7 HOH A 16 516 41 HOH HOH . J 7 HOH A 17 517 117 HOH HOH . J 7 HOH A 18 518 137 HOH HOH . J 7 HOH A 19 519 232 HOH HOH . J 7 HOH A 20 520 47 HOH HOH . J 7 HOH A 21 521 111 HOH HOH . J 7 HOH A 22 522 24 HOH HOH . J 7 HOH A 23 523 264 HOH HOH . J 7 HOH A 24 524 110 HOH HOH . J 7 HOH A 25 525 55 HOH HOH . J 7 HOH A 26 526 128 HOH HOH . J 7 HOH A 27 527 37 HOH HOH . J 7 HOH A 28 528 165 HOH HOH . J 7 HOH A 29 529 181 HOH HOH . J 7 HOH A 30 530 23 HOH HOH . J 7 HOH A 31 531 49 HOH HOH . J 7 HOH A 32 532 69 HOH HOH . J 7 HOH A 33 533 45 HOH HOH . J 7 HOH A 34 534 8 HOH HOH . J 7 HOH A 35 535 144 HOH HOH . J 7 HOH A 36 536 187 HOH HOH . J 7 HOH A 37 537 134 HOH HOH . J 7 HOH A 38 538 38 HOH HOH . J 7 HOH A 39 539 203 HOH HOH . J 7 HOH A 40 540 211 HOH HOH . J 7 HOH A 41 541 16 HOH HOH . J 7 HOH A 42 542 161 HOH HOH . J 7 HOH A 43 543 191 HOH HOH . J 7 HOH A 44 544 210 HOH HOH . J 7 HOH A 45 545 157 HOH HOH . J 7 HOH A 46 546 174 HOH HOH . J 7 HOH A 47 547 131 HOH HOH . J 7 HOH A 48 548 162 HOH HOH . J 7 HOH A 49 549 95 HOH HOH . J 7 HOH A 50 550 67 HOH HOH . J 7 HOH A 51 551 149 HOH HOH . J 7 HOH A 52 552 43 HOH HOH . J 7 HOH A 53 553 169 HOH HOH . J 7 HOH A 54 554 2 HOH HOH . J 7 HOH A 55 555 29 HOH HOH . J 7 HOH A 56 556 221 HOH HOH . J 7 HOH A 57 557 31 HOH HOH . J 7 HOH A 58 558 125 HOH HOH . J 7 HOH A 59 559 56 HOH HOH . J 7 HOH A 60 560 20 HOH HOH . J 7 HOH A 61 561 10 HOH HOH . J 7 HOH A 62 562 270 HOH HOH . J 7 HOH A 63 563 239 HOH HOH . J 7 HOH A 64 564 92 HOH HOH . J 7 HOH A 65 565 257 HOH HOH . J 7 HOH A 66 566 126 HOH HOH . J 7 HOH A 67 567 190 HOH HOH . J 7 HOH A 68 568 12 HOH HOH . J 7 HOH A 69 569 152 HOH HOH . J 7 HOH A 70 570 80 HOH HOH . J 7 HOH A 71 571 9 HOH HOH . J 7 HOH A 72 572 135 HOH HOH . J 7 HOH A 73 573 147 HOH HOH . J 7 HOH A 74 574 124 HOH HOH . J 7 HOH A 75 575 17 HOH HOH . J 7 HOH A 76 576 282 HOH HOH . J 7 HOH A 77 577 97 HOH HOH . J 7 HOH A 78 578 130 HOH HOH . J 7 HOH A 79 579 53 HOH HOH . J 7 HOH A 80 580 178 HOH HOH . J 7 HOH A 81 581 1 HOH HOH . J 7 HOH A 82 582 100 HOH HOH . J 7 HOH A 83 583 63 HOH HOH . J 7 HOH A 84 584 15 HOH HOH . J 7 HOH A 85 585 122 HOH HOH . J 7 HOH A 86 586 72 HOH HOH . J 7 HOH A 87 587 86 HOH HOH . J 7 HOH A 88 588 248 HOH HOH . J 7 HOH A 89 589 57 HOH HOH . J 7 HOH A 90 590 6 HOH HOH . J 7 HOH A 91 591 156 HOH HOH . J 7 HOH A 92 592 5 HOH HOH . J 7 HOH A 93 593 85 HOH HOH . J 7 HOH A 94 594 202 HOH HOH . J 7 HOH A 95 595 98 HOH HOH . J 7 HOH A 96 596 184 HOH HOH . J 7 HOH A 97 597 123 HOH HOH . J 7 HOH A 98 598 151 HOH HOH . J 7 HOH A 99 599 11 HOH HOH . J 7 HOH A 100 600 153 HOH HOH . J 7 HOH A 101 601 42 HOH HOH . J 7 HOH A 102 602 7 HOH HOH . J 7 HOH A 103 603 19 HOH HOH . J 7 HOH A 104 604 108 HOH HOH . J 7 HOH A 105 605 4 HOH HOH . J 7 HOH A 106 606 35 HOH HOH . J 7 HOH A 107 607 3 HOH HOH . J 7 HOH A 108 608 46 HOH HOH . J 7 HOH A 109 609 14 HOH HOH . J 7 HOH A 110 610 129 HOH HOH . J 7 HOH A 111 611 105 HOH HOH . J 7 HOH A 112 612 34 HOH HOH . J 7 HOH A 113 613 290 HOH HOH . J 7 HOH A 114 614 87 HOH HOH . J 7 HOH A 115 615 289 HOH HOH . J 7 HOH A 116 616 273 HOH HOH . J 7 HOH A 117 617 205 HOH HOH . J 7 HOH A 118 618 25 HOH HOH . J 7 HOH A 119 619 176 HOH HOH . J 7 HOH A 120 620 27 HOH HOH . J 7 HOH A 121 621 79 HOH HOH . J 7 HOH A 122 622 247 HOH HOH . J 7 HOH A 123 623 103 HOH HOH . J 7 HOH A 124 624 255 HOH HOH . J 7 HOH A 125 625 88 HOH HOH . J 7 HOH A 126 626 40 HOH HOH . J 7 HOH A 127 627 177 HOH HOH . J 7 HOH A 128 628 182 HOH HOH . J 7 HOH A 129 629 77 HOH HOH . J 7 HOH A 130 630 96 HOH HOH . J 7 HOH A 131 631 168 HOH HOH . J 7 HOH A 132 632 155 HOH HOH . J 7 HOH A 133 633 33 HOH HOH . J 7 HOH A 134 634 50 HOH HOH . J 7 HOH A 135 635 54 HOH HOH . J 7 HOH A 136 636 13 HOH HOH . J 7 HOH A 137 637 251 HOH HOH . J 7 HOH A 138 638 91 HOH HOH . J 7 HOH A 139 639 281 HOH HOH . J 7 HOH A 140 640 39 HOH HOH . J 7 HOH A 141 641 136 HOH HOH . J 7 HOH A 142 642 30 HOH HOH . J 7 HOH A 143 643 199 HOH HOH . J 7 HOH A 144 644 26 HOH HOH . J 7 HOH A 145 645 60 HOH HOH . J 7 HOH A 146 646 175 HOH HOH . J 7 HOH A 147 647 90 HOH HOH . J 7 HOH A 148 648 148 HOH HOH . J 7 HOH A 149 649 160 HOH HOH . J 7 HOH A 150 650 22 HOH HOH . J 7 HOH A 151 651 99 HOH HOH . J 7 HOH A 152 652 66 HOH HOH . J 7 HOH A 153 653 236 HOH HOH . J 7 HOH A 154 654 112 HOH HOH . J 7 HOH A 155 655 163 HOH HOH . J 7 HOH A 156 656 18 HOH HOH . J 7 HOH A 157 657 52 HOH HOH . J 7 HOH A 158 658 84 HOH HOH . J 7 HOH A 159 659 101 HOH HOH . J 7 HOH A 160 660 48 HOH HOH . J 7 HOH A 161 661 271 HOH HOH . J 7 HOH A 162 662 119 HOH HOH . J 7 HOH A 163 663 109 HOH HOH . J 7 HOH A 164 664 217 HOH HOH . J 7 HOH A 165 665 142 HOH HOH . J 7 HOH A 166 666 113 HOH HOH . J 7 HOH A 167 667 263 HOH HOH . J 7 HOH A 168 668 32 HOH HOH . J 7 HOH A 169 669 245 HOH HOH . J 7 HOH A 170 670 288 HOH HOH . J 7 HOH A 171 671 218 HOH HOH . J 7 HOH A 172 672 262 HOH HOH . J 7 HOH A 173 673 208 HOH HOH . J 7 HOH A 174 674 265 HOH HOH . J 7 HOH A 175 675 171 HOH HOH . J 7 HOH A 176 676 266 HOH HOH . J 7 HOH A 177 677 36 HOH HOH . J 7 HOH A 178 678 120 HOH HOH . J 7 HOH A 179 679 61 HOH HOH . J 7 HOH A 180 680 81 HOH HOH . J 7 HOH A 181 681 73 HOH HOH . J 7 HOH A 182 682 76 HOH HOH . J 7 HOH A 183 683 249 HOH HOH . J 7 HOH A 184 684 166 HOH HOH . J 7 HOH A 185 685 28 HOH HOH . J 7 HOH A 186 686 253 HOH HOH . J 7 HOH A 187 687 242 HOH HOH . J 7 HOH A 188 688 70 HOH HOH . J 7 HOH A 189 689 145 HOH HOH . J 7 HOH A 190 690 158 HOH HOH . J 7 HOH A 191 691 132 HOH HOH . J 7 HOH A 192 692 82 HOH HOH . J 7 HOH A 193 693 71 HOH HOH . J 7 HOH A 194 694 75 HOH HOH . J 7 HOH A 195 695 189 HOH HOH . J 7 HOH A 196 696 89 HOH HOH . J 7 HOH A 197 697 138 HOH HOH . J 7 HOH A 198 698 116 HOH HOH . J 7 HOH A 199 699 216 HOH HOH . J 7 HOH A 200 700 114 HOH HOH . J 7 HOH A 201 701 277 HOH HOH . J 7 HOH A 202 702 64 HOH HOH . J 7 HOH A 203 703 212 HOH HOH . J 7 HOH A 204 704 65 HOH HOH . J 7 HOH A 205 705 141 HOH HOH . J 7 HOH A 206 706 51 HOH HOH . J 7 HOH A 207 707 107 HOH HOH . J 7 HOH A 208 708 291 HOH HOH . J 7 HOH A 209 709 227 HOH HOH . J 7 HOH A 210 710 154 HOH HOH . J 7 HOH A 211 711 68 HOH HOH . J 7 HOH A 212 712 167 HOH HOH . J 7 HOH A 213 713 275 HOH HOH . J 7 HOH A 214 714 213 HOH HOH . J 7 HOH A 215 715 139 HOH HOH . J 7 HOH A 216 716 102 HOH HOH . J 7 HOH A 217 717 287 HOH HOH . J 7 HOH A 218 718 140 HOH HOH . J 7 HOH A 219 719 278 HOH HOH . J 7 HOH A 220 720 269 HOH HOH . J 7 HOH A 221 721 74 HOH HOH . J 7 HOH A 222 722 44 HOH HOH . J 7 HOH A 223 723 240 HOH HOH . J 7 HOH A 224 724 173 HOH HOH . J 7 HOH A 225 725 150 HOH HOH . J 7 HOH A 226 726 127 HOH HOH . J 7 HOH A 227 727 230 HOH HOH . J 7 HOH A 228 728 106 HOH HOH . J 7 HOH A 229 729 94 HOH HOH . J 7 HOH A 230 730 194 HOH HOH . J 7 HOH A 231 731 201 HOH HOH . J 7 HOH A 232 732 209 HOH HOH . J 7 HOH A 233 733 268 HOH HOH . J 7 HOH A 234 734 234 HOH HOH . J 7 HOH A 235 735 243 HOH HOH . J 7 HOH A 236 736 222 HOH HOH . J 7 HOH A 237 737 195 HOH HOH . J 7 HOH A 238 738 183 HOH HOH . J 7 HOH A 239 739 233 HOH HOH . J 7 HOH A 240 740 274 HOH HOH . J 7 HOH A 241 741 193 HOH HOH . J 7 HOH A 242 742 159 HOH HOH . J 7 HOH A 243 743 223 HOH HOH . J 7 HOH A 244 744 283 HOH HOH . J 7 HOH A 245 745 224 HOH HOH . J 7 HOH A 246 746 93 HOH HOH . J 7 HOH A 247 747 118 HOH HOH . J 7 HOH A 248 748 252 HOH HOH . J 7 HOH A 249 749 206 HOH HOH . J 7 HOH A 250 750 220 HOH HOH . J 7 HOH A 251 751 244 HOH HOH . J 7 HOH A 252 752 121 HOH HOH . J 7 HOH A 253 753 146 HOH HOH . J 7 HOH A 254 754 188 HOH HOH . J 7 HOH A 255 755 225 HOH HOH . J 7 HOH A 256 756 197 HOH HOH . J 7 HOH A 257 757 133 HOH HOH . J 7 HOH A 258 758 267 HOH HOH . J 7 HOH A 259 759 115 HOH HOH . J 7 HOH A 260 760 256 HOH HOH . J 7 HOH A 261 761 198 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 19.369 48.267 11.139 1 52.53 ? C1 EDO 406 A 1 HETATM 2 O O1 EDO . . . G 4 18.815 49.552 10.827 1 50.7 ? O1 EDO 406 A 1 HETATM 3 C C2 EDO . . . G 4 18.382 47.575 12.066 1 53.85 ? C2 EDO 406 A 1 HETATM 4 O O2 EDO . . . G 4 17.161 47.364 11.341 1 51.17 ? O2 EDO 406 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 74 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #