data_7A8Y
#
_model_server_result.job_id            Y43ImUF9Zwv5x12XXQbUNw 
_model_server_result.datetime_utc      '2025-04-12 14:17:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7a8y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    7A8Y 
#
_exptl.entry_id    7A8Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7A8Y 
_cell.length_a            71.3 
_cell.length_b            71.3 
_cell.length_c            216.65 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7A8Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 35.65 61.747611 -36.108333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C PYR 1 BBB PYR 25 1_555 B N CYS 2 BBB CYS 26 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.579 ? 
covale ? covale2 D C PYR 1 EaE PYR 25 1_555 D N CYS 2 EaE CYS 26 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.586 ? 
covale ? covale3 H N SER . EaE SER 202 1_555 I CB DSN . EaE DSN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 96 n n 
C1 C2 EDO sing 97 n n 
C1 H11 EDO sing 98 n n 
C1 H12 EDO sing 99 n n 
O1 HO1 EDO sing 100 n n 
C2 O2 EDO sing 101 n n 
C2 H21 EDO sing 102 n n 
C2 H22 EDO sing 103 n n 
O2 HO2 EDO sing 104 n n 
#
_atom_sites.entry_id                     7A8Y 
_atom_sites.fract_transf_matrix[1][1]    0.014025 
_atom_sites.fract_transf_matrix[1][2]    0.008097 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016195 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004616 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 DSN BBB 1 201 1 DSN DSN . 
F 3 DSN BBB 1 202 1 DSN DSN . 
G 4 EDO EaE 1 201 1 EDO GOL . 
H 5 SER EaE 1 202 1 SER DSN . 
I 3 DSN EaE 1 203 1 DSN DSN . 
J 6 HOH AAA 1 101 40 HOH HOH . 
J 6 HOH AAA 2 102 213 HOH HOH . 
J 6 HOH AAA 3 103 46 HOH HOH . 
J 6 HOH AAA 4 104 235 HOH HOH . 
J 6 HOH AAA 5 105 38 HOH HOH . 
J 6 HOH AAA 6 106 248 HOH HOH . 
J 6 HOH AAA 7 107 8 HOH HOH . 
J 6 HOH AAA 8 108 187 HOH HOH . 
J 6 HOH AAA 9 109 93 HOH HOH . 
J 6 HOH AAA 10 110 36 HOH HOH . 
J 6 HOH AAA 11 111 236 HOH HOH . 
J 6 HOH AAA 12 112 176 HOH HOH . 
J 6 HOH AAA 13 113 181 HOH HOH . 
J 6 HOH AAA 14 114 230 HOH HOH . 
J 6 HOH AAA 15 115 257 HOH HOH . 
J 6 HOH AAA 16 116 102 HOH HOH . 
J 6 HOH AAA 17 117 258 HOH HOH . 
J 6 HOH AAA 18 118 96 HOH HOH . 
J 6 HOH AAA 19 119 161 HOH HOH . 
J 6 HOH AAA 20 120 256 HOH HOH . 
J 6 HOH AAA 21 121 142 HOH HOH . 
J 6 HOH AAA 22 122 66 HOH HOH . 
J 6 HOH AAA 23 123 186 HOH HOH . 
K 6 HOH BBB 1 301 228 HOH HOH . 
K 6 HOH BBB 2 302 109 HOH HOH . 
K 6 HOH BBB 3 303 189 HOH HOH . 
K 6 HOH BBB 4 304 116 HOH HOH . 
K 6 HOH BBB 5 305 144 HOH HOH . 
K 6 HOH BBB 6 306 91 HOH HOH . 
K 6 HOH BBB 7 307 108 HOH HOH . 
K 6 HOH BBB 8 308 123 HOH HOH . 
K 6 HOH BBB 9 309 57 HOH HOH . 
K 6 HOH BBB 10 310 2 HOH HOH . 
K 6 HOH BBB 11 311 10 HOH HOH . 
K 6 HOH BBB 12 312 75 HOH HOH . 
K 6 HOH BBB 13 313 147 HOH HOH . 
K 6 HOH BBB 14 314 94 HOH HOH . 
K 6 HOH BBB 15 315 51 HOH HOH . 
K 6 HOH BBB 16 316 56 HOH HOH . 
K 6 HOH BBB 17 317 112 HOH HOH . 
K 6 HOH BBB 18 318 20 HOH HOH . 
K 6 HOH BBB 19 319 92 HOH HOH . 
K 6 HOH BBB 20 320 138 HOH HOH . 
K 6 HOH BBB 21 321 88 HOH HOH . 
K 6 HOH BBB 22 322 250 HOH HOH . 
K 6 HOH BBB 23 323 86 HOH HOH . 
K 6 HOH BBB 24 324 146 HOH HOH . 
K 6 HOH BBB 25 325 177 HOH HOH . 
K 6 HOH BBB 26 326 47 HOH HOH . 
K 6 HOH BBB 27 327 70 HOH HOH . 
K 6 HOH BBB 28 328 45 HOH HOH . 
K 6 HOH BBB 29 329 4 HOH HOH . 
K 6 HOH BBB 30 330 78 HOH HOH . 
K 6 HOH BBB 31 331 203 HOH HOH . 
K 6 HOH BBB 32 332 55 HOH HOH . 
K 6 HOH BBB 33 333 81 HOH HOH . 
K 6 HOH BBB 34 334 37 HOH HOH . 
K 6 HOH BBB 35 335 43 HOH HOH . 
K 6 HOH BBB 36 336 249 HOH HOH . 
K 6 HOH BBB 37 337 26 HOH HOH . 
K 6 HOH BBB 38 338 124 HOH HOH . 
K 6 HOH BBB 39 339 77 HOH HOH . 
K 6 HOH BBB 40 340 85 HOH HOH . 
K 6 HOH BBB 41 341 30 HOH HOH . 
K 6 HOH BBB 42 342 253 HOH HOH . 
K 6 HOH BBB 43 343 5 HOH HOH . 
K 6 HOH BBB 44 344 101 HOH HOH . 
K 6 HOH BBB 45 345 162 HOH HOH . 
K 6 HOH BBB 46 346 34 HOH HOH . 
K 6 HOH BBB 47 347 18 HOH HOH . 
K 6 HOH BBB 48 348 62 HOH HOH . 
K 6 HOH BBB 49 349 39 HOH HOH . 
K 6 HOH BBB 50 350 150 HOH HOH . 
K 6 HOH BBB 51 351 24 HOH HOH . 
K 6 HOH BBB 52 352 65 HOH HOH . 
K 6 HOH BBB 53 353 28 HOH HOH . 
K 6 HOH BBB 54 354 226 HOH HOH . 
K 6 HOH BBB 55 355 202 HOH HOH . 
K 6 HOH BBB 56 356 52 HOH HOH . 
K 6 HOH BBB 57 357 48 HOH HOH . 
K 6 HOH BBB 58 358 165 HOH HOH . 
K 6 HOH BBB 59 359 227 HOH HOH . 
K 6 HOH BBB 60 360 231 HOH HOH . 
K 6 HOH BBB 61 361 67 HOH HOH . 
K 6 HOH BBB 62 362 104 HOH HOH . 
K 6 HOH BBB 63 363 111 HOH HOH . 
K 6 HOH BBB 64 364 141 HOH HOH . 
K 6 HOH BBB 65 365 126 HOH HOH . 
K 6 HOH BBB 66 366 151 HOH HOH . 
K 6 HOH BBB 67 367 63 HOH HOH . 
K 6 HOH BBB 68 368 239 HOH HOH . 
K 6 HOH BBB 69 369 143 HOH HOH . 
K 6 HOH BBB 70 370 152 HOH HOH . 
K 6 HOH BBB 71 371 32 HOH HOH . 
K 6 HOH BBB 72 372 252 HOH HOH . 
K 6 HOH BBB 73 373 207 HOH HOH . 
K 6 HOH BBB 74 374 194 HOH HOH . 
K 6 HOH BBB 75 375 261 HOH HOH . 
K 6 HOH BBB 76 376 255 HOH HOH . 
K 6 HOH BBB 77 377 191 HOH HOH . 
K 6 HOH BBB 78 378 260 HOH HOH . 
K 6 HOH BBB 79 379 120 HOH HOH . 
K 6 HOH BBB 80 380 61 HOH HOH . 
K 6 HOH BBB 81 381 54 HOH HOH . 
K 6 HOH BBB 82 382 206 HOH HOH . 
K 6 HOH BBB 83 383 84 HOH HOH . 
K 6 HOH BBB 84 384 193 HOH HOH . 
K 6 HOH BBB 85 385 205 HOH HOH . 
K 6 HOH BBB 86 386 251 HOH HOH . 
K 6 HOH BBB 87 387 139 HOH HOH . 
K 6 HOH BBB 88 388 254 HOH HOH . 
L 6 HOH DDD 1 101 49 HOH HOH . 
L 6 HOH DDD 2 102 232 HOH HOH . 
L 6 HOH DDD 3 103 200 HOH HOH . 
L 6 HOH DDD 4 104 59 HOH HOH . 
L 6 HOH DDD 5 105 154 HOH HOH . 
L 6 HOH DDD 6 106 13 HOH HOH . 
L 6 HOH DDD 7 107 210 HOH HOH . 
L 6 HOH DDD 8 108 6 HOH HOH . 
L 6 HOH DDD 9 109 216 HOH HOH . 
L 6 HOH DDD 10 110 79 HOH HOH . 
L 6 HOH DDD 11 111 241 HOH HOH . 
L 6 HOH DDD 12 112 201 HOH HOH . 
L 6 HOH DDD 13 113 233 HOH HOH . 
L 6 HOH DDD 14 114 242 HOH HOH . 
L 6 HOH DDD 15 115 198 HOH HOH . 
L 6 HOH DDD 16 116 217 HOH HOH . 
L 6 HOH DDD 17 117 243 HOH HOH . 
L 6 HOH DDD 18 118 225 HOH HOH . 
L 6 HOH DDD 19 119 240 HOH HOH . 
L 6 HOH DDD 20 120 140 HOH HOH . 
L 6 HOH DDD 21 121 185 HOH HOH . 
M 6 HOH EaE 1 301 134 HOH HOH . 
M 6 HOH EaE 2 302 215 HOH HOH . 
M 6 HOH EaE 3 303 71 HOH HOH . 
M 6 HOH EaE 4 304 83 HOH HOH . 
M 6 HOH EaE 5 305 114 HOH HOH . 
M 6 HOH EaE 6 306 3 HOH HOH . 
M 6 HOH EaE 7 307 33 HOH HOH . 
M 6 HOH EaE 8 308 204 HOH HOH . 
M 6 HOH EaE 9 309 190 HOH HOH . 
M 6 HOH EaE 10 310 31 HOH HOH . 
M 6 HOH EaE 11 311 166 HOH HOH . 
M 6 HOH EaE 12 312 73 HOH HOH . 
M 6 HOH EaE 13 313 12 HOH HOH . 
M 6 HOH EaE 14 314 105 HOH HOH . 
M 6 HOH EaE 15 315 132 HOH HOH . 
M 6 HOH EaE 16 316 82 HOH HOH . 
M 6 HOH EaE 17 317 234 HOH HOH . 
M 6 HOH EaE 18 318 259 HOH HOH . 
M 6 HOH EaE 19 319 35 HOH HOH . 
M 6 HOH EaE 20 320 170 HOH HOH . 
M 6 HOH EaE 21 321 44 HOH HOH . 
M 6 HOH EaE 22 322 53 HOH HOH . 
M 6 HOH EaE 23 323 15 HOH HOH . 
M 6 HOH EaE 24 324 118 HOH HOH . 
M 6 HOH EaE 25 325 9 HOH HOH . 
M 6 HOH EaE 26 326 196 HOH HOH . 
M 6 HOH EaE 27 327 99 HOH HOH . 
M 6 HOH EaE 28 328 19 HOH HOH . 
M 6 HOH EaE 29 329 27 HOH HOH . 
M 6 HOH EaE 30 330 87 HOH HOH . 
M 6 HOH EaE 31 331 115 HOH HOH . 
M 6 HOH EaE 32 332 214 HOH HOH . 
M 6 HOH EaE 33 333 175 HOH HOH . 
M 6 HOH EaE 34 334 192 HOH HOH . 
M 6 HOH EaE 35 335 237 HOH HOH . 
M 6 HOH EaE 36 336 90 HOH HOH . 
M 6 HOH EaE 37 337 58 HOH HOH . 
M 6 HOH EaE 38 338 119 HOH HOH . 
M 6 HOH EaE 39 339 156 HOH HOH . 
M 6 HOH EaE 40 340 14 HOH HOH . 
M 6 HOH EaE 41 341 107 HOH HOH . 
M 6 HOH EaE 42 342 110 HOH HOH . 
M 6 HOH EaE 43 343 153 HOH HOH . 
M 6 HOH EaE 44 344 121 HOH HOH . 
M 6 HOH EaE 45 345 106 HOH HOH . 
M 6 HOH EaE 46 346 157 HOH HOH . 
M 6 HOH EaE 47 347 42 HOH HOH . 
M 6 HOH EaE 48 348 218 HOH HOH . 
M 6 HOH EaE 49 349 60 HOH HOH . 
M 6 HOH EaE 50 350 113 HOH HOH . 
M 6 HOH EaE 51 351 208 HOH HOH . 
M 6 HOH EaE 52 352 247 HOH HOH . 
M 6 HOH EaE 53 353 69 HOH HOH . 
M 6 HOH EaE 54 354 223 HOH HOH . 
M 6 HOH EaE 55 355 197 HOH HOH . 
M 6 HOH EaE 56 356 95 HOH HOH . 
M 6 HOH EaE 57 357 98 HOH HOH . 
M 6 HOH EaE 58 358 100 HOH HOH . 
M 6 HOH EaE 59 359 219 HOH HOH . 
M 6 HOH EaE 60 360 148 HOH HOH . 
M 6 HOH EaE 61 361 41 HOH HOH . 
M 6 HOH EaE 62 362 221 HOH HOH . 
M 6 HOH EaE 63 363 76 HOH HOH . 
M 6 HOH EaE 64 364 199 HOH HOH . 
M 6 HOH EaE 65 365 195 HOH HOH . 
M 6 HOH EaE 66 366 238 HOH HOH . 
M 6 HOH EaE 67 367 188 HOH HOH . 
M 6 HOH EaE 68 368 224 HOH HOH . 
M 6 HOH EaE 69 369 229 HOH HOH . 
M 6 HOH EaE 70 370 122 HOH HOH . 
M 6 HOH EaE 71 371 245 HOH HOH . 
M 6 HOH EaE 72 372 64 HOH HOH . 
M 6 HOH EaE 73 373 222 HOH HOH . 
M 6 HOH EaE 74 374 129 HOH HOH . 
M 6 HOH EaE 75 375 246 HOH HOH . 
M 6 HOH EaE 76 376 244 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 4 9.348 15.273 -28.729 1 31.23 ? C1 EDO 201 EaE 1 
HETATM 2 O O1 EDO . . . G 4 8.472 15.12 -27.613 1 26.96 ? O1 EDO 201 EaE 1 
HETATM 3 C C2 EDO . . . G 4 9.872 13.946 -29.24 1 32.37 ? C2 EDO 201 EaE 1 
HETATM 4 O O2 EDO . . . G 4 11.24 14.065 -29.634 1 35.13 ? O2 EDO 201 EaE 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#