data_7A90
#
_model_server_result.job_id            ZgZuwDDareGQb34TEad-rQ 
_model_server_result.datetime_utc      '2024-10-19 03:58:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7a90 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7A90 
#
_exptl.entry_id    7A90 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              696.541 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            9-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7A90 
_cell.length_a            110.811 
_cell.length_b            110.811 
_cell.length_c            35.601 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7A90 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -17.8005 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H24 F2 N10 O8 P2 S2 2' 
_chem_comp.formula_weight    696.541 
_chem_comp.id                R4T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              9-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S4 P1 R4T sing 275 n n 
O22 P1 R4T doub 276 n n 
P1 O8 R4T sing 277 n n 
P1 O10 R4T sing 278 n n 
C14 N7 R4T doub 279 n y 
C14 N6 R4T sing 280 n y 
O5 C17 R4T sing 281 n n 
O5 C18 R4T sing 282 n n 
N7 C12 R4T sing 283 n y 
O8 C19 R4T sing 284 n n 
C19 C18 R4T sing 285 n n 
N6 C17 R4T sing 286 n n 
N6 C11 R4T sing 287 n y 
C17 C16 R4T sing 288 n n 
C12 C11 R4T doub 289 n y 
C12 C13 R4T sing 290 n y 
C18 C15 R4T sing 291 n n 
O10 C5 R4T sing 292 n n 
C11 N5 R4T sing 293 n y 
N9 C13 R4T sing 294 n n 
C13 N4 R4T doub 295 n y 
N5 C10 R4T doub 296 n y 
C N R4T doub 297 n y 
C N1 R4T sing 298 n y 
C16 F6 R4T sing 299 n n 
C16 C15 R4T sing 300 n n 
C5 C6 R4T sing 301 n n 
C5 C8 R4T sing 302 n n 
F9 C6 R4T sing 303 n n 
N C3 R4T sing 304 n y 
N4 C10 R4T sing 305 n y 
C15 O7 R4T sing 306 n n 
C6 C7 R4T sing 307 n n 
N1 C1 R4T doub 308 n y 
C3 N11 R4T sing 309 n n 
C3 C2 R4T doub 310 n y 
C1 C2 R4T sing 311 n y 
C1 N2 R4T sing 312 n y 
O7 P R4T sing 313 n n 
C8 C9 R4T sing 314 n n 
C8 O1 R4T sing 315 n n 
C2 N3 R4T sing 316 n y 
C7 N2 R4T sing 317 n n 
C7 O1 R4T sing 318 n n 
C9 O2 R4T sing 319 n n 
N2 C4 R4T sing 320 n y 
O2 P R4T sing 321 n n 
N3 C4 R4T doub 322 n y 
P O R4T doub 323 n n 
P S3 R4T sing 324 n n 
C4 H4 R4T sing 325 n n 
C5 H5 R4T sing 326 n n 
C6 H6 R4T sing 327 n n 
C7 H7 R4T sing 328 n n 
C8 H8 R4T sing 329 n n 
C9 H91 R4T sing 330 n n 
C9 H92 R4T sing 331 n n 
C10 H10 R4T sing 332 n n 
C14 H14 R4T sing 333 n n 
C15 H15 R4T sing 334 n n 
C17 H17 R4T sing 335 n n 
C18 H18 R4T sing 336 n n 
C19 H192 R4T sing 337 n n 
C19 H191 R4T sing 338 n n 
C16 H16 R4T sing 339 n n 
C H R4T sing 340 n n 
N11 H111 R4T sing 341 n n 
N11 H113 R4T sing 342 n n 
N9 HN92 R4T sing 343 n n 
N9 HN9 R4T sing 344 n n 
S3 HS3 R4T sing 345 n n 
S4 HS4 R4T sing 346 n n 
HN91 N9 R4T sing 347 n n 
N11 H112 R4T sing 348 n n 
#
_atom_sites.entry_id                     7A90 
_atom_sites.fract_transf_matrix[1][1]    0.009024 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009024 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028089 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           R4T 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       R4T 
_pdbx_nonpoly_scheme.auth_mon_id      85C 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 R4T . . . B 2 -16.005 21.457 -7.886 0.5 27.15 ? C1 R4T 401 A 1 
HETATM 2 C C2 R4T . . . B 2 -15.555 20.122 -7.633 0.5 26.85 ? C2 R4T 401 A 1 
HETATM 3 C C3 R4T . . . B 2 -14.27 19.757 -8.22 0.5 27.33 ? C3 R4T 401 A 1 
HETATM 4 C C4 R4T . . . B 2 -17.462 20.473 -6.697 0.5 27.34 ? C4 R4T 401 A 1 
HETATM 5 C C5 R4T . . . B 2 -19.521 22.759 -8.951 0.5 27.49 ? C5 R4T 401 A 1 
HETATM 6 C C6 R4T . . . B 2 -18.118 23.194 -8.784 0.5 27.83 ? C6 R4T 401 A 1 
HETATM 7 N N1 R4T . . . B 2 -15.277 22.287 -8.605 0.5 27.43 ? N1 R4T 401 A 1 
HETATM 8 N N2 R4T . . . B 2 -17.144 21.605 -7.299 0.5 27.57 ? N2 R4T 401 A 1 
HETATM 9 N N3 R4T . . . B 2 -16.495 19.566 -6.894 0.5 25.91 ? N3 R4T 401 A 1 
HETATM 10 O O1 R4T . . . B 2 -19.143 22.763 -6.764 0.5 26.95 ? O1 R4T 401 A 1 
HETATM 11 C C7 R4T . . . B 2 -17.877 22.87 -7.355 0.5 27.56 ? C7 R4T 401 A 1 
HETATM 12 C C8 R4T . . . B 2 -20.127 23.18 -7.65 0.5 28.04 ? C8 R4T 401 A 1 
HETATM 13 C C9 R4T . . . B 2 -21.425 22.498 -7.301 0.5 26.78 ? C9 R4T 401 A 1 
HETATM 14 C C10 R4T . . . B 2 -21.899 14.121 -8.707 0.5 29.81 ? C10 R4T 401 A 1 
HETATM 15 C C11 R4T . . . B 2 -21.457 16.002 -9.921 0.5 26.97 ? C11 R4T 401 A 1 
HETATM 16 C C12 R4T . . . B 2 -20.121 15.553 -10.173 0.5 25.78 ? C12 R4T 401 A 1 
HETATM 17 C C13 R4T . . . B 2 -19.754 14.268 -9.587 0.5 27.51 ? C13 R4T 401 A 1 
HETATM 18 C C14 R4T . . . B 2 -20.474 17.458 -11.111 0.5 27.29 ? C14 R4T 401 A 1 
HETATM 19 C C15 R4T . . . B 2 -22.761 19.519 -8.858 0.5 27.17 ? C15 R4T 401 A 1 
HETATM 20 O O2 R4T . . . B 2 -21.23 21.161 -6.909 0.5 27.15 ? O2 R4T 401 A 1 
HETATM 21 C C17 R4T . . . B 2 -22.87 17.872 -10.452 0.5 27.28 ? C17 R4T 401 A 1 
HETATM 22 C C18 R4T . . . B 2 -23.184 20.121 -10.159 0.5 26.81 ? C18 R4T 401 A 1 
HETATM 23 C C19 R4T . . . B 2 -22.504 21.421 -10.512 0.5 26.55 ? C19 R4T 401 A 1 
HETATM 24 C C16 R4T . . . B 2 -23.193 18.116 -9.023 0.5 28.18 ? C16 R4T 401 A 1 
HETATM 25 N N4 R4T . . . B 2 -20.681 13.642 -8.887 0.5 29.28 ? N4 R4T 401 A 1 
HETATM 26 N N R4T . . . B 2 -13.644 20.685 -8.92 0.5 29.28 ? N R4T 401 A 1 
HETATM 27 C C R4T . . . B 2 -14.124 21.902 -9.1 0.5 29.81 ? C R4T 401 A 1 
HETATM 28 O O R4T . . . B 2 -22.025 18.933 -6.327 0.5 27.9 ? O R4T 401 A 1 
HETATM 29 N N11 R4T . . . B 2 -13.63 18.434 -8.093 0.5 32.26 ? N11 R4T 401 A 1 
HETATM 30 F F6 R4T . . . B 2 -24.512 18.02 -8.877 0.5 27.48 ? F6 R4T 401 A 1 
HETATM 31 F F9 R4T . . . B 2 -18.027 24.513 -8.928 0.5 27.41 ? F9 R4T 401 A 1 
HETATM 32 N N5 R4T . . . B 2 -22.285 15.273 -9.202 0.5 27.85 ? N5 R4T 401 A 1 
HETATM 33 N N6 R4T . . . B 2 -21.605 17.141 -10.508 0.5 27.17 ? N6 R4T 401 A 1 
HETATM 34 N N7 R4T . . . B 2 -19.565 16.492 -10.914 0.5 25.74 ? N7 R4T 401 A 1 
HETATM 35 N N9 R4T . . . B 2 -18.431 13.628 -9.714 0.5 32.25 ? N9 R4T 401 A 1 
HETATM 36 O O10 R4T . . . B 2 -20.087 23.36 -10.064 0.5 27.71 ? O10 R4T 401 A 1 
HETATM 37 O O22 R4T . . . B 2 -18.937 22.02 -11.481 0.5 27.68 ? O22 R4T 401 A 1 
HETATM 38 O O5 R4T . . . B 2 -22.766 19.138 -11.044 0.5 26.96 ? O5 R4T 401 A 1 
HETATM 39 O O7 R4T . . . B 2 -23.362 20.085 -7.745 0.5 27.66 ? O7 R4T 401 A 1 
HETATM 40 O O8 R4T . . . B 2 -21.164 21.226 -10.895 0.5 26.49 ? O8 R4T 401 A 1 
HETATM 41 P P R4T . . . B 2 -22.43 20.252 -6.564 0.5 26.1 ? P R4T 401 A 1 
HETATM 42 P P1 R4T . . . B 2 -20.255 22.426 -11.243 0.5 28.21 ? P1 R4T 401 A 1 
HETATM 43 S S3 R4T . . . B 2 -23.488 21.022 -5.095 0.5 26.24 ? S3 R4T 401 A 1 
HETATM 44 S S4 R4T . . . B 2 -21.025 23.484 -12.714 0.5 26.17 ? S4 R4T 401 A 1 
HETATM 45 H H4 R4T . . . B 2 -18.365 20.305 -6.124 0.5 32.99 ? H4 R4T 401 A 1 
HETATM 46 H H5 R4T . . . B 2 -19.558 21.664 -9.037 0.5 33.17 ? H5 R4T 401 A 1 
HETATM 47 H H6 R4T . . . B 2 -17.443 22.642 -9.452 0.5 33.58 ? H6 R4T 401 A 1 
HETATM 48 H H7 R4T . . . B 2 -17.296 23.677 -6.888 0.5 33.25 ? H7 R4T 401 A 1 
HETATM 49 H H8 R4T . . . B 2 -20.248 24.273 -7.624 0.5 33.83 ? H8 R4T 401 A 1 
HETATM 50 H H91 R4T . . . B 2 -22.089 22.526 -8.168 0.5 32.31 ? H91 R4T 401 A 1 
HETATM 51 H H92 R4T . . . B 2 -21.914 23.044 -6.493 0.5 32.31 ? H92 R4T 401 A 1 
HETATM 52 H H10 R4T . . . B 2 -22.602 13.547 -8.116 0.5 35.96 ? H10 R4T 401 A 1 
HETATM 53 H H14 R4T . . . B 2 -20.306 18.363 -11.684 0.5 32.92 ? H14 R4T 401 A 1 
HETATM 54 H H15 R4T . . . B 2 -21.666 19.558 -8.773 0.5 32.78 ? H15 R4T 401 A 1 
HETATM 55 H H17 R4T . . . B 2 -23.678 17.29 -10.917 0.5 32.92 ? H17 R4T 401 A 1 
HETATM 56 H H18 R4T . . . B 2 -24.276 20.241 -10.185 0.5 32.35 ? H18 R4T 401 A 1 
HETATM 57 H H192 R4T . . . B 2 -23.046 21.9 -11.329 0.5 32.05 ? H192 R4T 401 A 1 
HETATM 58 H H191 R4T . . . B 2 -22.538 22.092 -9.651 0.5 32.05 ? H191 R4T 401 A 1 
HETATM 59 H H16 R4T . . . B 2 -22.639 17.442 -8.354 0.5 34 ? H16 R4T 401 A 1 
HETATM 60 H H R4T . . . B 2 -13.55 22.605 -9.691 0.5 35.96 ? H R4T 401 A 1 
HETATM 61 H H111 R4T . . . B 2 -12.834 18.373 -8.747 0.5 38.89 ? H111 R4T 401 A 1 
HETATM 62 H H113 R4T . . . B 2 -13.289 18.309 -7.125 0.5 38.89 ? H113 R4T 401 A 1 
HETATM 63 H HN92 R4T . . . B 2 -18.001 13.537 -8.779 0.5 38.88 ? HN92 R4T 401 A 1 
HETATM 64 H HN9 R4T . . . B 2 -18.539 12.691 -10.136 0.5 38.88 ? HN9 R4T 401 A 1 
HETATM 65 H HS3 R4T . . . B 2 -22.981 20.626 -3.931 0.5 31.67 ? HS3 R4T 401 A 1 
HETATM 66 H HS4 R4T . . . B 2 -20.636 22.971 -13.877 0.5 31.59 ? HS4 R4T 401 A 1 
HETATM 67 H HN91 R4T . . . B 2 -17.824 14.208 -10.317 0.5 38.88 ? HN91 R4T 401 A 1 
HETATM 68 H H112 R4T . . . B 2 -14.316 17.695 -8.315 0.5 38.89 ? H112 R4T 401 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           68 
#