data_7A9E # _model_server_result.job_id xzVGENOnv82_Jzp2ggZ_Dg _model_server_result.datetime_utc '2024-11-08 04:29:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7a9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7A9E # _exptl.entry_id 7A9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7A9E _cell.length_a 127.998 _cell.length_b 127.998 _cell.length_c 115.379 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -19.229833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 332 A CYS 330 1_555 A SG CYS 332 A CYS 330 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc1 A SG CYS 320 A CYS 318 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc2 A SG CYS 322 A CYS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A SG CYS 325 A CYS 323 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 A ND1 HIS 351 A HIS 349 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7A9E _atom_sites.fract_transf_matrix[1][1] 0.007813 _atom_sites.fract_transf_matrix[1][2] 0.004511 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 GOL A 1 402 1 GOL GOL . D 3 GOL A 1 403 2 GOL GOL . E 4 R4W A 1 404 1 R4W EMS . F 4 R4W A 1 405 2 R4W EMS . G 5 EDO A 1 406 1 EDO EDO . H 6 HOH A 1 501 147 HOH HOH . H 6 HOH A 2 502 144 HOH HOH . H 6 HOH A 3 503 221 HOH HOH . H 6 HOH A 4 504 225 HOH HOH . H 6 HOH A 5 505 235 HOH HOH . H 6 HOH A 6 506 146 HOH HOH . H 6 HOH A 7 507 148 HOH HOH . H 6 HOH A 8 508 188 HOH HOH . H 6 HOH A 9 509 228 HOH HOH . H 6 HOH A 10 510 217 HOH HOH . H 6 HOH A 11 511 119 HOH HOH . H 6 HOH A 12 512 61 HOH HOH . H 6 HOH A 13 513 31 HOH HOH . H 6 HOH A 14 514 67 HOH HOH . H 6 HOH A 15 515 227 HOH HOH . H 6 HOH A 16 516 91 HOH HOH . H 6 HOH A 17 517 207 HOH HOH . H 6 HOH A 18 518 157 HOH HOH . H 6 HOH A 19 519 14 HOH HOH . H 6 HOH A 20 520 84 HOH HOH . H 6 HOH A 21 521 186 HOH HOH . H 6 HOH A 22 522 43 HOH HOH . H 6 HOH A 23 523 36 HOH HOH . H 6 HOH A 24 524 55 HOH HOH . H 6 HOH A 25 525 66 HOH HOH . H 6 HOH A 26 526 16 HOH HOH . H 6 HOH A 27 527 145 HOH HOH . H 6 HOH A 28 528 154 HOH HOH . H 6 HOH A 29 529 12 HOH HOH . H 6 HOH A 30 530 126 HOH HOH . H 6 HOH A 31 531 177 HOH HOH . H 6 HOH A 32 532 7 HOH HOH . H 6 HOH A 33 533 137 HOH HOH . H 6 HOH A 34 534 35 HOH HOH . H 6 HOH A 35 535 4 HOH HOH . H 6 HOH A 36 536 204 HOH HOH . H 6 HOH A 37 537 56 HOH HOH . H 6 HOH A 38 538 19 HOH HOH . H 6 HOH A 39 539 68 HOH HOH . H 6 HOH A 40 540 189 HOH HOH . H 6 HOH A 41 541 10 HOH HOH . H 6 HOH A 42 542 100 HOH HOH . H 6 HOH A 43 543 115 HOH HOH . H 6 HOH A 44 544 29 HOH HOH . H 6 HOH A 45 545 34 HOH HOH . H 6 HOH A 46 546 60 HOH HOH . H 6 HOH A 47 547 101 HOH HOH . H 6 HOH A 48 548 208 HOH HOH . H 6 HOH A 49 549 54 HOH HOH . H 6 HOH A 50 550 94 HOH HOH . H 6 HOH A 51 551 3 HOH HOH . H 6 HOH A 52 552 42 HOH HOH . H 6 HOH A 53 553 178 HOH HOH . H 6 HOH A 54 554 243 HOH HOH . H 6 HOH A 55 555 113 HOH HOH . H 6 HOH A 56 556 11 HOH HOH . H 6 HOH A 57 557 161 HOH HOH . H 6 HOH A 58 558 90 HOH HOH . H 6 HOH A 59 559 111 HOH HOH . H 6 HOH A 60 560 52 HOH HOH . H 6 HOH A 61 561 78 HOH HOH . H 6 HOH A 62 562 28 HOH HOH . H 6 HOH A 63 563 20 HOH HOH . H 6 HOH A 64 564 13 HOH HOH . H 6 HOH A 65 565 96 HOH HOH . H 6 HOH A 66 566 133 HOH HOH . H 6 HOH A 67 567 86 HOH HOH . H 6 HOH A 68 568 9 HOH HOH . H 6 HOH A 69 569 200 HOH HOH . H 6 HOH A 70 570 18 HOH HOH . H 6 HOH A 71 571 46 HOH HOH . H 6 HOH A 72 572 76 HOH HOH . H 6 HOH A 73 573 41 HOH HOH . H 6 HOH A 74 574 81 HOH HOH . H 6 HOH A 75 575 251 HOH HOH . H 6 HOH A 76 576 253 HOH HOH . H 6 HOH A 77 577 51 HOH HOH . H 6 HOH A 78 578 117 HOH HOH . H 6 HOH A 79 579 193 HOH HOH . H 6 HOH A 80 580 47 HOH HOH . H 6 HOH A 81 581 165 HOH HOH . H 6 HOH A 82 582 211 HOH HOH . H 6 HOH A 83 583 118 HOH HOH . H 6 HOH A 84 584 37 HOH HOH . H 6 HOH A 85 585 98 HOH HOH . H 6 HOH A 86 586 15 HOH HOH . H 6 HOH A 87 587 79 HOH HOH . H 6 HOH A 88 588 5 HOH HOH . H 6 HOH A 89 589 40 HOH HOH . H 6 HOH A 90 590 27 HOH HOH . H 6 HOH A 91 591 198 HOH HOH . H 6 HOH A 92 592 167 HOH HOH . H 6 HOH A 93 593 77 HOH HOH . H 6 HOH A 94 594 206 HOH HOH . H 6 HOH A 95 595 158 HOH HOH . H 6 HOH A 96 596 1 HOH HOH . H 6 HOH A 97 597 8 HOH HOH . H 6 HOH A 98 598 44 HOH HOH . H 6 HOH A 99 599 92 HOH HOH . H 6 HOH A 100 600 138 HOH HOH . H 6 HOH A 101 601 128 HOH HOH . H 6 HOH A 102 602 65 HOH HOH . H 6 HOH A 103 603 102 HOH HOH . H 6 HOH A 104 604 2 HOH HOH . H 6 HOH A 105 605 82 HOH HOH . H 6 HOH A 106 606 97 HOH HOH . H 6 HOH A 107 607 21 HOH HOH . H 6 HOH A 108 608 71 HOH HOH . H 6 HOH A 109 609 203 HOH HOH . H 6 HOH A 110 610 75 HOH HOH . H 6 HOH A 111 611 30 HOH HOH . H 6 HOH A 112 612 212 HOH HOH . H 6 HOH A 113 613 58 HOH HOH . H 6 HOH A 114 614 187 HOH HOH . H 6 HOH A 115 615 140 HOH HOH . H 6 HOH A 116 616 179 HOH HOH . H 6 HOH A 117 617 173 HOH HOH . H 6 HOH A 118 618 224 HOH HOH . H 6 HOH A 119 619 23 HOH HOH . H 6 HOH A 120 620 85 HOH HOH . H 6 HOH A 121 621 153 HOH HOH . H 6 HOH A 122 622 184 HOH HOH . H 6 HOH A 123 623 160 HOH HOH . H 6 HOH A 124 624 234 HOH HOH . H 6 HOH A 125 625 150 HOH HOH . H 6 HOH A 126 626 38 HOH HOH . H 6 HOH A 127 627 123 HOH HOH . H 6 HOH A 128 628 45 HOH HOH . H 6 HOH A 129 629 48 HOH HOH . H 6 HOH A 130 630 149 HOH HOH . H 6 HOH A 131 631 236 HOH HOH . H 6 HOH A 132 632 26 HOH HOH . H 6 HOH A 133 633 169 HOH HOH . H 6 HOH A 134 634 17 HOH HOH . H 6 HOH A 135 635 155 HOH HOH . H 6 HOH A 136 636 192 HOH HOH . H 6 HOH A 137 637 88 HOH HOH . H 6 HOH A 138 638 136 HOH HOH . H 6 HOH A 139 639 135 HOH HOH . H 6 HOH A 140 640 53 HOH HOH . H 6 HOH A 141 641 73 HOH HOH . H 6 HOH A 142 642 80 HOH HOH . H 6 HOH A 143 643 176 HOH HOH . H 6 HOH A 144 644 199 HOH HOH . H 6 HOH A 145 645 33 HOH HOH . H 6 HOH A 146 646 205 HOH HOH . H 6 HOH A 147 647 125 HOH HOH . H 6 HOH A 148 648 64 HOH HOH . H 6 HOH A 149 649 72 HOH HOH . H 6 HOH A 150 650 131 HOH HOH . H 6 HOH A 151 651 25 HOH HOH . H 6 HOH A 152 652 223 HOH HOH . H 6 HOH A 153 653 109 HOH HOH . H 6 HOH A 154 654 110 HOH HOH . H 6 HOH A 155 655 74 HOH HOH . H 6 HOH A 156 656 99 HOH HOH . H 6 HOH A 157 657 134 HOH HOH . H 6 HOH A 158 658 39 HOH HOH . H 6 HOH A 159 659 69 HOH HOH . H 6 HOH A 160 660 103 HOH HOH . H 6 HOH A 161 661 105 HOH HOH . H 6 HOH A 162 662 139 HOH HOH . H 6 HOH A 163 663 70 HOH HOH . H 6 HOH A 164 664 59 HOH HOH . H 6 HOH A 165 665 24 HOH HOH . H 6 HOH A 166 666 132 HOH HOH . H 6 HOH A 167 667 50 HOH HOH . H 6 HOH A 168 668 141 HOH HOH . H 6 HOH A 169 669 194 HOH HOH . H 6 HOH A 170 670 130 HOH HOH . H 6 HOH A 171 671 174 HOH HOH . H 6 HOH A 172 672 93 HOH HOH . H 6 HOH A 173 673 62 HOH HOH . H 6 HOH A 174 674 171 HOH HOH . H 6 HOH A 175 675 163 HOH HOH . H 6 HOH A 176 676 49 HOH HOH . H 6 HOH A 177 677 247 HOH HOH . H 6 HOH A 178 678 89 HOH HOH . H 6 HOH A 179 679 151 HOH HOH . H 6 HOH A 180 680 104 HOH HOH . H 6 HOH A 181 681 219 HOH HOH . H 6 HOH A 182 682 172 HOH HOH . H 6 HOH A 183 683 241 HOH HOH . H 6 HOH A 184 684 114 HOH HOH . H 6 HOH A 185 685 213 HOH HOH . H 6 HOH A 186 686 159 HOH HOH . H 6 HOH A 187 687 196 HOH HOH . H 6 HOH A 188 688 22 HOH HOH . H 6 HOH A 189 689 240 HOH HOH . H 6 HOH A 190 690 168 HOH HOH . H 6 HOH A 191 691 166 HOH HOH . H 6 HOH A 192 692 57 HOH HOH . H 6 HOH A 193 693 156 HOH HOH . H 6 HOH A 194 694 201 HOH HOH . H 6 HOH A 195 695 237 HOH HOH . H 6 HOH A 196 696 216 HOH HOH . H 6 HOH A 197 697 124 HOH HOH . H 6 HOH A 198 698 87 HOH HOH . H 6 HOH A 199 699 83 HOH HOH . H 6 HOH A 200 700 229 HOH HOH . H 6 HOH A 201 701 209 HOH HOH . H 6 HOH A 202 702 249 HOH HOH . H 6 HOH A 203 703 127 HOH HOH . H 6 HOH A 204 704 202 HOH HOH . H 6 HOH A 205 705 215 HOH HOH . H 6 HOH A 206 706 248 HOH HOH . H 6 HOH A 207 707 250 HOH HOH . H 6 HOH A 208 708 121 HOH HOH . H 6 HOH A 209 709 175 HOH HOH . H 6 HOH A 210 710 116 HOH HOH . H 6 HOH A 211 711 210 HOH HOH . H 6 HOH A 212 712 220 HOH HOH . H 6 HOH A 213 713 180 HOH HOH . H 6 HOH A 214 714 162 HOH HOH . H 6 HOH A 215 715 122 HOH HOH . H 6 HOH A 216 716 143 HOH HOH . H 6 HOH A 217 717 106 HOH HOH . H 6 HOH A 218 718 120 HOH HOH . H 6 HOH A 219 719 142 HOH HOH . H 6 HOH A 220 720 183 HOH HOH . H 6 HOH A 221 721 170 HOH HOH . H 6 HOH A 222 722 195 HOH HOH . H 6 HOH A 223 723 63 HOH HOH . H 6 HOH A 224 724 112 HOH HOH . H 6 HOH A 225 725 197 HOH HOH . H 6 HOH A 226 726 185 HOH HOH . H 6 HOH A 227 727 222 HOH HOH . H 6 HOH A 228 728 191 HOH HOH . H 6 HOH A 229 729 129 HOH HOH . H 6 HOH A 230 730 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 8.114 33.803 -18.527 1 35.41 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 3 7.186 33.126 -17.775 1 36.6 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 3 8.86 32.852 -19.425 1 36.62 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 3 7.972 32.021 -20.114 1 36.34 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 3 9.876 32.05 -18.678 1 34.16 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 3 10.539 31.182 -19.552 1 31.83 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 112 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #