data_7AAB # _model_server_result.job_id FA1ALeHJjFlWCRBkBrO-Pw _model_server_result.datetime_utc '2024-11-08 18:48:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1101}' # _entry.id 7AAB # _exptl.entry_id 7AAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 537.528 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AAB _cell.length_a 134.899 _cell.length_b 134.899 _cell.length_c 111.388 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 186 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 845 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 186 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 845 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.044 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H27 N9 O6' _chem_comp.formula_weight 537.528 _chem_comp.id UHB _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 UHB doub 362 n y C01 C06 UHB sing 363 n y C02 C03 UHB sing 364 n y C03 C04 UHB doub 365 n y C04 C05 UHB sing 366 n y C04 N11 UHB sing 367 n n C05 C06 UHB doub 368 n y C05 C08 UHB sing 369 n n C06 C07 UHB sing 370 n n C07 N09 UHB sing 371 n n C07 O10 UHB doub 372 n n C08 N09 UHB sing 373 n n N11 C12 UHB sing 374 n n C12 O13 UHB doub 375 n n C12 C14 UHB sing 376 n n C14 N15 UHB sing 377 n n N15 C16 UHB sing 378 n n N15 C20 UHB sing 379 n n C16 C17 UHB sing 380 n n C17 N18 UHB sing 381 n n N18 C19 UHB sing 382 n n N18 C21 UHB sing 383 n n C19 C20 UHB sing 384 n n C21 C22 UHB sing 385 n n C21 O27 UHB doub 386 n n C22 C23 UHB sing 387 n n C22 O26 UHB sing 388 n n C23 C24 UHB sing 389 n n C23 O28 UHB sing 390 n n C24 C25 UHB sing 391 n n C24 O29 UHB sing 392 n n C25 O26 UHB sing 393 n n C25 N30 UHB sing 394 n n N30 C32 UHB sing 395 n y N30 C33 UHB sing 396 n y C31 C32 UHB doub 397 n y C31 N34 UHB sing 398 n y C31 C38 UHB sing 399 n y C32 N37 UHB sing 400 n y C33 N34 UHB doub 401 n y N35 C36 UHB sing 402 n y N35 C38 UHB doub 403 n y C36 N37 UHB doub 404 n y C38 N39 UHB sing 405 n n C01 H01 UHB sing 406 n n C02 H02 UHB sing 407 n n C03 H03 UHB sing 408 n n C08 H081 UHB sing 409 n n C08 H082 UHB sing 410 n n N09 HN09 UHB sing 411 n n C14 H14 UHB sing 412 n n C14 H14A UHB sing 413 n n C16 H16 UHB sing 414 n n C16 H16A UHB sing 415 n n C17 H17 UHB sing 416 n n C17 H17A UHB sing 417 n n C19 H19 UHB sing 418 n n C19 H19A UHB sing 419 n n C20 H20 UHB sing 420 n n C20 H20A UHB sing 421 n n C22 H22 UHB sing 422 n n C23 H23 UHB sing 423 n n C24 H24 UHB sing 424 n n C25 H25 UHB sing 425 n n O28 HO28 UHB sing 426 n n O29 HO29 UHB sing 427 n n C33 H33 UHB sing 428 n n C36 H36 UHB sing 429 n n N39 HN39 UHB sing 430 n n N39 HN3A UHB sing 431 n n N11 HN11 UHB sing 432 n n # _atom_sites.entry_id 7AAB _atom_sites.fract_transf_matrix[1][1] 0.007413 _atom_sites.fract_transf_matrix[1][2] 0.00428 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UHB A 1 1101 1 UHB UHB . D 3 SO4 A 1 1102 1 SO4 SO4 . E 3 SO4 A 1 1103 4 SO4 SO4 . F 2 UHB B 1 1101 2 UHB UHB . G 3 SO4 B 1 1102 2 SO4 SO4 . H 3 SO4 B 1 1103 3 SO4 SO4 . I 4 HOH A 1 1201 6 HOH HOH . I 4 HOH A 2 1202 20 HOH HOH . I 4 HOH A 3 1203 15 HOH HOH . I 4 HOH A 4 1204 21 HOH HOH . I 4 HOH A 5 1205 2 HOH HOH . I 4 HOH A 6 1206 7 HOH HOH . I 4 HOH A 7 1207 13 HOH HOH . I 4 HOH A 8 1208 14 HOH HOH . I 4 HOH A 9 1209 18 HOH HOH . I 4 HOH A 10 1210 12 HOH HOH . I 4 HOH A 11 1211 10 HOH HOH . I 4 HOH A 12 1212 5 HOH HOH . J 4 HOH B 1 1201 19 HOH HOH . J 4 HOH B 2 1202 4 HOH HOH . J 4 HOH B 3 1203 8 HOH HOH . J 4 HOH B 4 1204 17 HOH HOH . J 4 HOH B 5 1205 1 HOH HOH . J 4 HOH B 6 1206 11 HOH HOH . J 4 HOH B 7 1207 16 HOH HOH . J 4 HOH B 8 1208 3 HOH HOH . J 4 HOH B 9 1209 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 UHB . . . F 2 -0.543 38.306 17.327 1 37.1 ? C01 UHB 1101 B 1 HETATM 2 C C02 UHB . . . F 2 0.733 37.754 17.266 1 37.33 ? C02 UHB 1101 B 1 HETATM 3 C C03 UHB . . . F 2 1.773 38.428 16.633 1 37.91 ? C03 UHB 1101 B 1 HETATM 4 C C04 UHB . . . F 2 1.538 39.678 16.052 1 39.76 ? C04 UHB 1101 B 1 HETATM 5 C C05 UHB . . . F 2 0.25 40.239 16.109 1 38.72 ? C05 UHB 1101 B 1 HETATM 6 C C06 UHB . . . F 2 -0.769 39.553 16.742 1 38.02 ? C06 UHB 1101 B 1 HETATM 7 C C07 UHB . . . F 2 -1.999 40.373 16.656 1 39.23 ? C07 UHB 1101 B 1 HETATM 8 C C08 UHB . . . F 2 -0.267 41.539 15.571 1 38.49 ? C08 UHB 1101 B 1 HETATM 9 N N09 UHB . . . F 2 -1.66 41.489 15.983 1 38.46 ? N09 UHB 1101 B 1 HETATM 10 O O10 UHB . . . F 2 -3.113 40.117 17.098 1 41.23 ? O10 UHB 1101 B 1 HETATM 11 N N11 UHB . . . F 2 2.595 40.376 15.414 1 42.45 ? N11 UHB 1101 B 1 HETATM 12 C C12 UHB . . . F 2 2.66 40.895 14.164 1 45.1 ? C12 UHB 1101 B 1 HETATM 13 O O13 UHB . . . F 2 1.718 40.904 13.37 1 44.86 ? O13 UHB 1101 B 1 HETATM 14 C C14 UHB . . . F 2 4.02 41.482 13.807 1 47.64 ? C14 UHB 1101 B 1 HETATM 15 N N15 UHB . . . F 2 4.022 42.689 12.97 1 49.83 ? N15 UHB 1101 B 1 HETATM 16 C C16 UHB . . . F 2 3.09 43.712 13.493 1 50.59 ? C16 UHB 1101 B 1 HETATM 17 C C17 UHB . . . F 2 3.06 44.939 12.595 1 51.57 ? C17 UHB 1101 B 1 HETATM 18 N N18 UHB . . . F 2 2.673 44.547 11.235 1 52.26 ? N18 UHB 1101 B 1 HETATM 19 C C19 UHB . . . F 2 3.663 43.611 10.696 1 50.83 ? C19 UHB 1101 B 1 HETATM 20 C C20 UHB . . . F 2 3.714 42.359 11.56 1 50.5 ? C20 UHB 1101 B 1 HETATM 21 C C21 UHB . . . F 2 1.589 44.936 10.519 1 54.55 ? C21 UHB 1101 B 1 HETATM 22 C C22 UHB . . . F 2 0.565 45.918 11.122 1 54.91 ? C22 UHB 1101 B 1 HETATM 23 C C23 UHB . . . F 2 -0.423 45.304 12.13 1 54.14 ? C23 UHB 1101 B 1 HETATM 24 C C24 UHB . . . F 2 -1.714 45.202 11.314 1 54.14 ? C24 UHB 1101 B 1 HETATM 25 C C25 UHB . . . F 2 -1.595 46.421 10.405 1 53.63 ? C25 UHB 1101 B 1 HETATM 26 O O26 UHB . . . F 2 -0.221 46.552 10.099 1 54.77 ? O26 UHB 1101 B 1 HETATM 27 O O27 UHB . . . F 2 1.389 44.528 9.385 1 55.45 ? O27 UHB 1101 B 1 HETATM 28 O O28 UHB . . . F 2 -0.56 46.098 13.306 1 53.52 ? O28 UHB 1101 B 1 HETATM 29 O O29 UHB . . . F 2 -2.883 45.315 12.117 1 55.01 ? O29 UHB 1101 B 1 HETATM 30 N N30 UHB . . . F 2 -2.346 46.334 9.156 1 52.86 ? N30 UHB 1101 B 1 HETATM 31 C C31 UHB . . . F 2 -3.558 46.807 7.381 1 53.24 ? C31 UHB 1101 B 1 HETATM 32 C C32 UHB . . . F 2 -2.989 47.365 8.517 1 53.26 ? C32 UHB 1101 B 1 HETATM 33 C C33 UHB . . . F 2 -2.559 45.225 8.379 1 52.77 ? C33 UHB 1101 B 1 HETATM 34 N N34 UHB . . . F 2 -3.277 45.452 7.308 1 53.02 ? N34 UHB 1101 B 1 HETATM 35 N N35 UHB . . . F 2 -4.377 48.977 6.905 1 53.5 ? N35 UHB 1101 B 1 HETATM 36 C C36 UHB . . . F 2 -3.775 49.374 8.032 1 53.7 ? C36 UHB 1101 B 1 HETATM 37 N N37 UHB . . . F 2 -3.061 48.647 8.901 1 53.67 ? N37 UHB 1101 B 1 HETATM 38 C C38 UHB . . . F 2 -4.287 47.678 6.54 1 53.1 ? C38 UHB 1101 B 1 HETATM 39 N N39 UHB . . . F 2 -4.889 47.298 5.409 1 52.35 ? N39 UHB 1101 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 39 #