data_7AAE # _model_server_result.job_id b2Mer_aYkU_80v5abEew3A _model_server_result.datetime_utc '2024-10-13 18:23:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":607}' # _entry.id 7AAE # _exptl.entry_id 7AAE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.45 _cell.angle_gamma 90 _cell.entry_id 7AAE _cell.length_a 95.315 _cell.length_b 38.537 _cell.length_c 184.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 AAA CYS 53 1_555 A SG CYS 61 AAA CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 A SG CYS 74 AAA CYS 75 1_555 A SG CYS 90 AAA CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 A SG CYS 89 AAA CYS 90 1_555 A SG CYS 100 AAA CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 A SG CYS 123 AAA CYS 124 1_555 A SG CYS 168 AAA CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf5 A SG CYS 167 AAA CYS 168 1_555 A SG CYS 176 AAA CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf6 A SG CYS 199 AAA CYS 200 1_555 A SG CYS 245 AAA CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf7 A SG CYS 244 AAA CYS 245 1_555 A SG CYS 252 AAA CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf8 A SG CYS 264 AAA CYS 265 1_555 A SG CYS 278 AAA CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 A SG CYS 277 AAA CYS 278 1_555 A SG CYS 288 AAA CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf10 A SG CYS 315 AAA CYS 316 1_555 A SG CYS 360 AAA CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 A SG CYS 359 AAA CYS 360 1_555 A SG CYS 368 AAA CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf12 A SG CYS 391 AAA CYS 392 1_555 A SG CYS 437 AAA CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf13 A SG CYS 436 AAA CYS 437 1_555 A SG CYS 447 AAA CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf14 A SG CYS 460 AAA CYS 461 1_555 A SG CYS 476 AAA CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf15 A SG CYS 475 AAA CYS 476 1_555 A SG CYS 486 AAA CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf16 A SG CYS 513 AAA CYS 514 1_555 A SG CYS 558 AAA CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf17 A SG CYS 557 AAA CYS 558 1_555 A SG CYS 566 AAA CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 241 n n C1 H11 MPD sing 242 n n C1 H12 MPD sing 243 n n C1 H13 MPD sing 244 n n C2 O2 MPD sing 245 n n C2 CM MPD sing 246 n n C2 C3 MPD sing 247 n n O2 HO2 MPD sing 248 n n CM HM1 MPD sing 249 n n CM HM2 MPD sing 250 n n CM HM3 MPD sing 251 n n C3 C4 MPD sing 252 n n C3 H31 MPD sing 253 n n C3 H32 MPD sing 254 n n C4 O4 MPD sing 255 n n C4 C5 MPD sing 256 n n C4 H4 MPD sing 257 n n O4 HO4 MPD sing 258 n n C5 H51 MPD sing 259 n n C5 H52 MPD sing 260 n n C5 H53 MPD sing 261 n n # _atom_sites.entry_id 7AAE _atom_sites.fract_transf_matrix[1][1] 0.010492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002704 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005604 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR AAA 1 601 1 MYR MYR . C 2 MYR AAA 1 602 2 MYR MYR . D 2 MYR AAA 1 603 3 MYR MYR . E 2 MYR AAA 1 604 4 MYR MYR . F 2 MYR AAA 1 605 5 MYR MYR . G 2 MYR AAA 1 606 6 MYR MYR . H 3 MPD AAA 1 607 1 MPD MPD . I 3 MPD AAA 1 608 2 MPD MPD . J 3 MPD AAA 1 609 3 MPD MPD . K 3 MPD AAA 1 610 4 MPD MPD . L 3 MPD AAA 1 611 6 MPD MPD . M 4 FMT AAA 1 612 1 FMT FMT . N 5 PO4 AAA 1 613 1 PO4 PO4 . O 6 HOH AAA 1 701 8 HOH HOH . O 6 HOH AAA 2 702 17 HOH HOH . O 6 HOH AAA 3 703 7 HOH HOH . O 6 HOH AAA 4 704 13 HOH HOH . O 6 HOH AAA 5 705 23 HOH HOH . O 6 HOH AAA 6 706 2 HOH HOH . O 6 HOH AAA 7 707 10 HOH HOH . O 6 HOH AAA 8 708 22 HOH HOH . O 6 HOH AAA 9 709 6 HOH HOH . O 6 HOH AAA 10 710 18 HOH HOH . O 6 HOH AAA 11 711 9 HOH HOH . O 6 HOH AAA 12 712 12 HOH HOH . O 6 HOH AAA 13 713 19 HOH HOH . O 6 HOH AAA 14 714 1 HOH HOH . O 6 HOH AAA 15 715 5 HOH HOH . O 6 HOH AAA 16 716 4 HOH HOH . O 6 HOH AAA 17 717 21 HOH HOH . O 6 HOH AAA 18 718 20 HOH HOH . O 6 HOH AAA 19 719 16 HOH HOH . O 6 HOH AAA 20 720 14 HOH HOH . O 6 HOH AAA 21 721 3 HOH HOH . O 6 HOH AAA 22 722 11 HOH HOH . O 6 HOH AAA 23 723 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 3 29.368 18.781 47.707 1 59.54 ? C1 MPD 607 AAA 1 HETATM 2 C C2 MPD . . . H 3 29.365 18.131 49.091 1 58.31 ? C2 MPD 607 AAA 1 HETATM 3 O O2 MPD . . . H 3 28.488 18.905 49.891 1 54.07 ? O2 MPD 607 AAA 1 HETATM 4 C CM MPD . . . H 3 28.852 16.696 49.058 1 59.81 ? CM MPD 607 AAA 1 HETATM 5 C C3 MPD . . . H 3 30.721 18.122 49.794 1 60.69 ? C3 MPD 607 AAA 1 HETATM 6 C C4 MPD . . . H 3 31.529 19.406 49.621 1 62.17 ? C4 MPD 607 AAA 1 HETATM 7 O O4 MPD . . . H 3 30.752 20.557 49.958 1 64.1 ? O4 MPD 607 AAA 1 HETATM 8 C C5 MPD . . . H 3 32.774 19.347 50.489 1 64.17 ? C5 MPD 607 AAA 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #