data_7AAP # _model_server_result.job_id 7Vid6WrfhlIkZU37EsjpWA _model_server_result.datetime_utc '2024-10-19 08:25:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1601}' # _entry.id 7AAP # _exptl.entry_id 7AAP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 529.157 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-5-fluoranyl-2-oxidanylidene-pyrazin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AAP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 209 A ASN 209 1_555 J MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc2 A OD2 ASP 218 A ASP 218 1_555 J MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc3 A ND1 HIS 295 A HIS 295 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc4 A SG CYS 301 A CYS 301 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc5 A SG CYS 306 A CYS 306 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc6 A SG CYS 310 A CYS 310 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc7 A SG CYS 487 A CYS 487 1_555 H ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 A ND1 HIS 642 A HIS 642 1_555 H ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc9 A SG CYS 645 A CYS 645 1_555 H ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc10 A SG CYS 646 A CYS 646 1_555 H ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc11 I MG MG . A MG 1003 1_555 M O09 GE6 . T GE6 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc12 J MG MG . A MG 1004 1_555 K O3 POP . A POP 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc13 J MG MG . A MG 1004 1_555 K O5 POP . A POP 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc14 L MG MG . P MG 101 1_555 M O15 GE6 . T GE6 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc15 L MG MG . P MG 101 1_555 M O09 GE6 . T GE6 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? hydrog WATSON-CRICK hydrog1 E N3 U 16 P U 12 1_555 F N1 A 15 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 E O4 U 16 P U 12 1_555 F N6 A 15 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 E N3 U 17 P U 13 1_555 F N1 A 14 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 E O4 U 17 P U 13 1_555 F N6 A 14 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 E N1 A 18 P A 14 1_555 F N3 U 13 T U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 E N6 A 18 P A 14 1_555 F O4 U 13 T U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 E N1 A 19 P A 15 1_555 F N3 U 12 T U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 E N6 A 19 P A 15 1_555 F O4 U 12 T U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 E N1 G 20 P G 16 1_555 F N3 C 11 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 E N2 G 20 P G 16 1_555 F O2 C 11 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 E O6 G 20 P G 16 1_555 F N4 C 11 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 E N3 U 21 P U 17 1_555 F N1 A 10 T A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 E O4 U 21 P U 17 1_555 F N6 A 10 T A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 E N3 U 22 P U 18 1_555 F N1 A 9 T A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 E O4 U 22 P U 18 1_555 F N6 A 9 T A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 E N1 A 23 P A 19 1_555 F N3 U 8 T U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 E N6 A 23 P A 19 1_555 F O4 U 8 T U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 E N3 U 24 P U 20 1_555 F N1 A 7 T A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 E O4 U 24 P U 20 1_555 F N6 A 7 T A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H15 F N3 O15 P3' _chem_comp.formula_weight 529.157 _chem_comp.id GE6 _chem_comp.mon_nstd_flag . _chem_comp.name '[[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-5-fluoranyl-2-oxidanylidene-pyrazin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O08 P01 GE6 doub 198 n n O06 P01 GE6 sing 199 n n O06 C05 GE6 sing 200 n n C04 O01 GE6 sing 201 n n C04 C05 GE6 sing 202 n n C04 C01 GE6 sing 203 n n O01 C03 GE6 sing 204 n n O02 C02 GE6 sing 205 n n O03 C01 GE6 sing 206 n n P01 O07 GE6 sing 207 n n P01 O09 GE6 sing 208 n n O07 P02 GE6 sing 209 n n C01 C02 GE6 sing 210 n n C03 C02 GE6 sing 211 n n C03 N02 GE6 sing 212 n n O13 P02 GE6 doub 213 n n O15 P03 GE6 doub 214 n n P02 O10 GE6 sing 215 n n P02 O14 GE6 sing 216 n n N02 C06 GE6 sing 217 n n N02 C10 GE6 sing 218 n n O05 C10 GE6 doub 219 n n C06 C07 GE6 doub 220 n n O10 P03 GE6 sing 221 n n C10 C08 GE6 sing 222 n n P03 O12 GE6 sing 223 n n P03 O11 GE6 sing 224 n n C07 F01 GE6 sing 225 n n C07 N03 GE6 sing 226 n n C08 N03 GE6 doub 227 n n C08 C09 GE6 sing 228 n n N01 C09 GE6 sing 229 n n C09 O04 GE6 doub 230 n n C01 H1 GE6 sing 231 n n C02 H2 GE6 sing 232 n n C03 H3 GE6 sing 233 n n C04 H4 GE6 sing 234 n n C05 H5 GE6 sing 235 n n C05 H6 GE6 sing 236 n n C06 H7 GE6 sing 237 n n N01 H10 GE6 sing 238 n n N01 H11 GE6 sing 239 n n O02 H12 GE6 sing 240 n n O03 H13 GE6 sing 241 n n O09 H14 GE6 sing 242 n n O11 H15 GE6 sing 243 n n O12 H16 GE6 sing 244 n n O14 H17 GE6 sing 245 n n # _atom_sites.entry_id 7AAP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 ZN A 1 1001 1001 ZN ZN . H 6 ZN A 1 1002 1002 ZN ZN . I 7 MG A 1 1003 1003 MG MG . J 7 MG A 1 1004 1004 MG MG . K 8 POP A 1 1005 1005 POP POP . L 7 MG P 1 101 101 MG MG . M 9 GE6 T 1 1601 1601 GE6 GE6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 GE6 . . . M 9 101.32 99.802 110.663 1 79.72 ? C01 GE6 1601 T 1 HETATM 2 C C02 GE6 . . . M 9 100.341 100.974 110.659 1 79.72 ? C02 GE6 1601 T 1 HETATM 3 C C03 GE6 . . . M 9 99.036 100.175 110.598 1 79.72 ? C03 GE6 1601 T 1 HETATM 4 C C04 GE6 . . . M 9 100.725 99.015 109.494 1 79.72 ? C04 GE6 1601 T 1 HETATM 5 C C05 GE6 . . . M 9 101.202 97.594 109.349 1 79.72 ? C05 GE6 1601 T 1 HETATM 6 C C06 GE6 . . . M 9 98.891 98.388 112.325 1 79.72 ? C06 GE6 1601 T 1 HETATM 7 C C07 GE6 . . . M 9 98.456 97.966 113.559 1 79.72 ? C07 GE6 1601 T 1 HETATM 8 C C08 GE6 . . . M 9 97.448 99.985 113.95 1 79.72 ? C08 GE6 1601 T 1 HETATM 9 C C09 GE6 . . . M 9 96.65 100.816 114.911 1 79.72 ? C09 GE6 1601 T 1 HETATM 10 C C10 GE6 . . . M 9 97.845 100.485 112.719 1 79.72 ? C10 GE6 1601 T 1 HETATM 11 F F01 GE6 . . . M 9 98.738 96.729 114.002 1 79.72 ? F01 GE6 1601 T 1 HETATM 12 N N01 GE6 . . . M 9 96.492 102.09 114.607 1 79.72 ? N01 GE6 1601 T 1 HETATM 13 N N02 GE6 . . . M 9 98.585 99.659 111.91 1 79.72 ? N02 GE6 1601 T 1 HETATM 14 N N03 GE6 . . . M 9 97.757 98.741 114.344 1 79.72 ? N03 GE6 1601 T 1 HETATM 15 O O01 GE6 . . . M 9 99.297 99.066 109.756 1 79.72 ? O01 GE6 1601 T 1 HETATM 16 O O02 GE6 . . . M 9 100.481 101.724 109.472 1 79.72 ? O02 GE6 1601 T 1 HETATM 17 O O03 GE6 . . . M 9 102.685 100.102 110.444 1 79.72 ? O03 GE6 1601 T 1 HETATM 18 O O04 GE6 . . . M 9 96.191 100.294 115.933 1 79.72 ? O04 GE6 1601 T 1 HETATM 19 O O05 GE6 . . . M 9 97.571 101.634 112.343 1 79.72 ? O05 GE6 1601 T 1 HETATM 20 O O06 GE6 . . . M 9 100.755 96.797 110.455 1 79.72 ? O06 GE6 1601 T 1 HETATM 21 O O07 GE6 . . . M 9 100.715 94.671 111.688 1 79.72 ? O07 GE6 1601 T 1 HETATM 22 O O08 GE6 . . . M 9 102.793 96.053 111.728 1 79.72 ? O08 GE6 1601 T 1 HETATM 23 O O09 GE6 . . . M 9 102.081 94.846 109.587 1 79.72 ? O09 GE6 1601 T 1 HETATM 24 O O10 GE6 . . . M 9 101.038 92.377 110.892 1 79.72 ? O10 GE6 1601 T 1 HETATM 25 O O11 GE6 . . . M 9 103.094 90.961 110.786 1 79.72 ? O11 GE6 1601 T 1 HETATM 26 O O12 GE6 . . . M 9 100.886 89.942 111.425 1 79.72 ? O12 GE6 1601 T 1 HETATM 27 O O13 GE6 . . . M 9 99.764 92.803 113.036 1 79.72 ? O13 GE6 1601 T 1 HETATM 28 O O14 GE6 . . . M 9 102.286 93.158 112.918 1 79.72 ? O14 GE6 1601 T 1 HETATM 29 O O15 GE6 . . . M 9 101.286 90.701 109.057 1 79.72 ? O15 GE6 1601 T 1 HETATM 30 P P01 GE6 . . . M 9 101.709 95.574 110.83 1 79.72 ? P01 GE6 1601 T 1 HETATM 31 P P02 GE6 . . . M 9 100.96 93.2 112.264 1 79.72 ? P02 GE6 1601 T 1 HETATM 32 P P03 GE6 . . . M 9 101.607 90.913 110.52 1 79.72 ? P03 GE6 1601 T 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 32 #