data_7ABR # _model_server_result.job_id jtK2bpr0lFMXBdBg3pPZsQ _model_server_result.datetime_utc '2025-04-24 05:44:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7abr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1001}' # _entry.id 7ABR # _exptl.entry_id 7ABR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ABR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ABR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH2 ARG 333 A ARG 333 1_555 J O2G ATP . A ATP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale2 A CG PRO 388 A PRO 388 1_555 H C8 ADP . A ADP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? covale ? covale3 C C GLY 211 C GLY 211 1_555 L O2B ATP . C ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale4 D N GLY 213 D GLY 213 1_555 N O1B ATP . D ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale5 D NH1 ARG 704 D ARG 704 1_555 P O2G ATP . D ATP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ABR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ADP A 1 1001 1001 ADP ADP . I 3 ADP A 1 1002 1002 ADP ADP . J 4 ATP A 1 1003 1001 ATP ATP . K 3 ADP B 1 901 1002 ADP ADP . L 4 ATP C 1 1001 1001 ATP ATP . M 4 ATP C 1 1002 1002 ATP ATP . N 4 ATP D 1 1001 1001 ATP ATP . O 4 ATP D 1 1002 1002 ATP ATP . P 4 ATP D 1 1003 1002 ATP ATP . Q 4 ATP E 1 1001 1001 ATP ATP . R 3 ADP F 1 1001 1001 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . L 4 142.682 129.956 164.202 1 31.39 ? PG ATP 1001 C 1 HETATM 2 O O1G ATP . . . L 4 142.457 130.897 163.061 1 31.39 ? O1G ATP 1001 C 1 HETATM 3 O O2G ATP . . . L 4 144.07 129.923 164.724 1 31.39 ? O2G ATP 1001 C 1 HETATM 4 O O3G ATP . . . L 4 141.624 129.989 165.258 1 31.39 ? O3G ATP 1001 C 1 HETATM 5 P PB ATP . . . L 4 143.419 127.251 164.003 1 31.39 ? PB ATP 1001 C 1 HETATM 6 O O1B ATP . . . L 4 143.324 127.265 165.498 1 31.39 ? O1B ATP 1001 C 1 HETATM 7 O O2B ATP . . . L 4 144.739 127.052 163.262 1 31.39 ? O2B ATP 1001 C 1 HETATM 8 O O3B ATP . . . L 4 142.564 128.518 163.519 1 31.39 ? O3B ATP 1001 C 1 HETATM 9 P PA ATP . . . L 4 141.064 125.897 164.098 1 31.39 ? PA ATP 1001 C 1 HETATM 10 O O1A ATP . . . L 4 141.29 125.482 165.515 1 31.39 ? O1A ATP 1001 C 1 HETATM 11 O O2A ATP . . . L 4 140.269 127.106 163.759 1 31.39 ? O2A ATP 1001 C 1 HETATM 12 O O3A ATP . . . L 4 142.499 126.07 163.473 1 31.39 ? O3A ATP 1001 C 1 HETATM 13 O O5' ATP . . . L 4 140.558 124.686 163.208 1 31.39 ? O5' ATP 1001 C 1 HETATM 14 C C5' ATP . . . L 4 141.17 124.435 161.955 1 31.39 ? C5' ATP 1001 C 1 HETATM 15 C C4' ATP . . . L 4 140.548 123.198 161.349 1 31.39 ? C4' ATP 1001 C 1 HETATM 16 O O4' ATP . . . L 4 141.393 122.115 161.66 1 31.39 ? O4' ATP 1001 C 1 HETATM 17 C C3' ATP . . . L 4 139.211 122.915 161.99 1 31.39 ? C3' ATP 1001 C 1 HETATM 18 O O3' ATP . . . L 4 138.308 122.428 161.005 1 31.39 ? O3' ATP 1001 C 1 HETATM 19 C C2' ATP . . . L 4 139.462 121.808 162.973 1 31.39 ? C2' ATP 1001 C 1 HETATM 20 O O2' ATP . . . L 4 138.337 120.933 162.968 1 31.39 ? O2' ATP 1001 C 1 HETATM 21 C C1' ATP . . . L 4 140.692 121.144 162.41 1 31.39 ? C1' ATP 1001 C 1 HETATM 22 N N9 ATP . . . L 4 141.615 120.71 163.463 1 31.39 ? N9 ATP 1001 C 1 HETATM 23 C C8 ATP . . . L 4 142.72 121.359 163.826 1 31.39 ? C8 ATP 1001 C 1 HETATM 24 N N7 ATP . . . L 4 143.364 120.69 164.802 1 31.39 ? N7 ATP 1001 C 1 HETATM 25 C C5 ATP . . . L 4 142.659 119.593 165.054 1 31.39 ? C5 ATP 1001 C 1 HETATM 26 C C6 ATP . . . L 4 142.786 118.467 165.967 1 31.39 ? C6 ATP 1001 C 1 HETATM 27 N N6 ATP . . . L 4 143.825 118.394 166.817 1 31.39 ? N6 ATP 1001 C 1 HETATM 28 N N1 ATP . . . L 4 141.837 117.523 165.928 1 31.39 ? N1 ATP 1001 C 1 HETATM 29 C C2 ATP . . . L 4 140.805 117.603 165.08 1 31.39 ? C2 ATP 1001 C 1 HETATM 30 N N3 ATP . . . L 4 140.629 118.604 164.22 1 31.39 ? N3 ATP 1001 C 1 HETATM 31 C C4 ATP . . . L 4 141.512 119.607 164.17 1 31.39 ? C4 ATP 1001 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #