data_7ABR # _model_server_result.job_id 3gXm7wIo2tV-F7o-IAuOVA _model_server_result.datetime_utc '2025-04-06 02:38:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7abr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1002}' # _entry.id 7ABR # _exptl.entry_id 7ABR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ABR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ABR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 K N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH2 ARG 333 A ARG 333 1_555 J O2G ATP . A ATP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale2 A CG PRO 388 A PRO 388 1_555 H C8 ADP . A ADP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? covale ? covale3 C C GLY 211 C GLY 211 1_555 L O2B ATP . C ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale4 D N GLY 213 D GLY 213 1_555 N O1B ATP . D ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale5 D NH1 ARG 704 D ARG 704 1_555 P O2G ATP . D ATP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ABR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ADP A 1 1001 1001 ADP ADP . I 3 ADP A 1 1002 1002 ADP ADP . J 4 ATP A 1 1003 1001 ATP ATP . K 3 ADP B 1 901 1002 ADP ADP . L 4 ATP C 1 1001 1001 ATP ATP . M 4 ATP C 1 1002 1002 ATP ATP . N 4 ATP D 1 1001 1001 ATP ATP . O 4 ATP D 1 1002 1002 ATP ATP . P 4 ATP D 1 1003 1002 ATP ATP . Q 4 ATP E 1 1001 1001 ATP ATP . R 3 ADP F 1 1001 1001 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . I 3 183.835 192.989 141.369 1 109.88 ? PB ADP 1002 A 1 HETATM 2 O O1B ADP . . . I 3 182.826 193.157 140.261 1 109.88 ? O1B ADP 1002 A 1 HETATM 3 O O2B ADP . . . I 3 185.263 192.988 140.899 1 109.88 ? O2B ADP 1002 A 1 HETATM 4 O O3B ADP . . . I 3 183.5 191.896 142.353 1 109.88 ? O3B ADP 1002 A 1 HETATM 5 P PA ADP . . . I 3 182.29 194.691 142.902 1 109.88 ? PA ADP 1002 A 1 HETATM 6 O O1A ADP . . . I 3 181.281 194.809 141.791 1 109.88 ? O1A ADP 1002 A 1 HETATM 7 O O2A ADP . . . I 3 182.023 193.733 144.036 1 109.88 ? O2A ADP 1002 A 1 HETATM 8 O O3A ADP . . . I 3 183.707 194.337 142.238 1 109.88 ? O3A ADP 1002 A 1 HETATM 9 O O5' ADP . . . I 3 182.466 196.164 143.507 1 109.88 ? O5' ADP 1002 A 1 HETATM 10 C C5' ADP . . . I 3 181.534 197.131 143.047 1 109.88 ? C5' ADP 1002 A 1 HETATM 11 C C4' ADP . . . I 3 181.864 198.514 143.567 1 109.88 ? C4' ADP 1002 A 1 HETATM 12 O O4' ADP . . . I 3 182.673 199.189 142.604 1 109.88 ? O4' ADP 1002 A 1 HETATM 13 C C3' ADP . . . I 3 180.575 199.295 143.704 1 109.88 ? C3' ADP 1002 A 1 HETATM 14 O O3' ADP . . . I 3 180.537 199.906 144.993 1 109.88 ? O3' ADP 1002 A 1 HETATM 15 C C2' ADP . . . I 3 180.634 200.345 142.621 1 109.88 ? C2' ADP 1002 A 1 HETATM 16 O O2' ADP . . . I 3 180.175 201.607 143.099 1 109.88 ? O2' ADP 1002 A 1 HETATM 17 C C1' ADP . . . I 3 182.097 200.446 142.253 1 109.88 ? C1' ADP 1002 A 1 HETATM 18 N N9 ADP . . . I 3 182.253 200.662 140.802 1 109.88 ? N9 ADP 1002 A 1 HETATM 19 C C8 ADP . . . I 3 183.125 200.014 140.017 1 109.88 ? C8 ADP 1002 A 1 HETATM 20 N N7 ADP . . . I 3 183.039 200.443 138.735 1 109.88 ? N7 ADP 1002 A 1 HETATM 21 C C5 ADP . . . I 3 182.092 201.387 138.694 1 109.88 ? C5 ADP 1002 A 1 HETATM 22 C C6 ADP . . . I 3 181.499 202.246 137.657 1 109.88 ? C6 ADP 1002 A 1 HETATM 23 N N6 ADP . . . I 3 181.923 202.167 136.384 1 109.88 ? N6 ADP 1002 A 1 HETATM 24 N N1 ADP . . . I 3 180.533 203.112 138.01 1 109.88 ? N1 ADP 1002 A 1 HETATM 25 C C2 ADP . . . I 3 180.114 203.192 139.28 1 109.88 ? C2 ADP 1002 A 1 HETATM 26 N N3 ADP . . . I 3 180.609 202.438 140.275 1 109.88 ? N3 ADP 1002 A 1 HETATM 27 C C4 ADP . . . I 3 181.583 201.532 140.055 1 109.88 ? C4 ADP 1002 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #